Wall clock time and date at job start Tue Mar 31 2020 00:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00147 * 2 1 4 4 H 1.48494 * 109.47281 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47025 * 120.00149 * 3 2 1 6 6 H 1.48506 * 109.46880 * 239.99791 * 3 2 1 7 7 C 1.38819 * 119.99604 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99672 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00304 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00219 * 180.02562 * 9 7 2 11 11 H 1.09000 * 110.88303 * 34.29373 * 10 9 7 12 12 C 1.55155 * 110.99892 * 270.42023 * 10 9 7 13 13 C 1.54374 * 102.91824 * 206.45212 * 12 10 9 14 14 N 1.47016 * 107.28658 * 22.13729 * 13 12 10 15 15 C 1.34781 * 125.64770 * 181.05642 * 14 13 12 16 16 O 1.21277 * 120.00241 * 174.99164 * 15 14 13 17 17 C 1.50702 * 119.99839 * 354.99395 * 15 14 13 18 18 C 1.51849 * 108.64736 * 218.87256 * 17 15 14 19 19 C 1.53024 * 110.73453 * 172.27816 * 18 17 15 20 20 C 1.51373 * 108.52803 * 85.89932 * 19 18 17 21 21 C 1.29521 * 120.36002 * 288.10351 * 20 19 18 22 22 C 1.51379 * 120.36116 * 359.97438 * 21 20 19 23 23 C 1.51846 * 108.65067 * 94.90685 * 17 15 14 24 24 C 1.47421 * 108.70521 * 1.09558 * 14 13 12 25 25 H 0.97001 * 120.00560 * 179.97438 * 1 2 3 26 26 H 0.97004 * 119.99340 * 0.02562 * 9 7 2 27 27 H 1.08998 * 110.72288 * 324.78168 * 12 10 9 28 28 H 1.08999 * 110.72221 * 88.06277 * 12 10 9 29 29 H 1.09005 * 109.84450 * 262.73375 * 13 12 10 30 30 H 1.08998 * 110.03168 * 141.65333 * 13 12 10 31 31 H 1.08993 * 108.60522 * 336.88643 * 17 15 14 32 32 H 1.09004 * 109.22211 * 292.72688 * 18 17 15 33 33 H 1.09000 * 109.22535 * 52.07128 * 18 17 15 34 34 H 1.09001 * 109.66969 * 326.17634 * 19 18 17 35 35 H 1.08997 * 109.78871 * 205.68775 * 19 18 17 36 36 H 1.07998 * 119.82017 * 108.08179 * 20 19 18 37 37 H 1.07996 * 119.82186 * 179.97438 * 21 20 19 38 38 H 1.09002 * 109.60810 * 312.16279 * 22 21 20 39 39 H 1.08998 * 109.75675 * 191.72266 * 22 21 20 40 40 H 1.09000 * 109.22253 * 307.93026 * 23 17 15 41 41 H 1.09001 * 109.21760 * 67.27528 * 23 17 15 42 42 H 1.09007 * 110.36644 * 217.03476 * 24 14 13 43 43 H 1.09001 * 110.46328 * 94.75769 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1040 1.6963 -1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0901 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0579 -3.6569 0.0027 11 1 2.9808 -3.5722 0.5765 12 6 2.3451 -4.1344 -1.4453 13 6 2.4542 -5.6662 -1.2883 14 7 1.7397 -6.0311 -0.0564 15 6 1.6217 -7.2773 0.4435 16 8 1.0855 -7.4517 1.5172 17 6 2.1560 -8.4538 -0.3319 18 6 1.1877 -9.6140 -0.1824 19 6 1.5827 -10.7713 -1.1022 20 6 2.6039 -11.6285 -0.3855 21 6 3.8121 -11.1968 -0.2081 22 6 4.2185 -9.8299 -0.7158 23 6 3.5571 -8.7658 0.1632 24 6 1.1728 -4.8085 0.5412 25 1 -0.4851 -0.8400 -0.0004 26 1 0.3555 -2.3880 0.0016 27 1 1.5205 -3.8728 -2.1084 28 1 3.2829 -3.7158 -1.8106 29 1 3.5019 -5.9564 -1.2089 30 1 1.9960 -6.1628 -2.1436 31 1 2.2115 -8.1798 -1.3854 32 1 1.1954 -9.9568 0.8523 33 1 0.1833 -9.2788 -0.4411 34 1 2.0161 -10.3777 -2.0217 35 1 0.7038 -11.3707 -1.3394 36 1 2.3235 -12.6052 -0.0197 37 1 4.5336 -11.8155 0.3049 38 1 3.8877 -9.7096 -1.7474 39 1 5.3022 -9.7249 -0.6644 40 1 4.1573 -7.8562 0.1386 41 1 3.5023 -9.1310 1.1888 42 1 1.2316 -4.8553 1.6287 43 1 0.1390 -4.6729 0.2233 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970739810.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:44 Heat of formation + Delta-G solvation = -18.444583 kcal Electronic energy + Delta-G solvation = -21924.128132 eV Core-core repulsion = 18776.117157 eV Total energy + Delta-G solvation = -3148.010975 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.40585 -38.44098 -37.14225 -34.45544 -32.95671 -32.10535 -31.42192 -29.50566 -27.87450 -25.92502 -24.23691 -23.55362 -22.92758 -21.10163 -20.25490 -18.97655 -18.27454 -17.52822 -17.22425 -16.56350 -15.81051 -15.34519 -14.88934 -14.48317 -14.37750 -13.72384 -13.50696 -13.34895 -13.26864 -13.22175 -12.92753 -12.70042 -12.22056 -12.14066 -11.87607 -11.68153 -11.50630 -11.07992 -10.95723 -10.85095 -10.73365 -10.65626 -10.57389 -10.29462 -10.02362 -9.72442 -9.27683 -9.18126 -8.99300 -8.46733 -7.15060 -6.17578 -3.19617 2.05144 2.72480 3.07887 3.48560 3.51752 3.69457 4.32230 4.41941 4.59227 4.61262 4.76427 4.88324 4.90025 4.95697 5.10566 5.16745 5.21163 5.29181 5.33592 5.41776 5.46087 5.52244 5.55813 5.57252 5.67872 5.73209 5.83018 5.89095 5.90604 5.95538 6.00875 6.13091 6.16837 6.26805 6.41695 6.46930 6.52640 6.66724 6.79539 7.67867 7.72985 8.27298 8.67576 9.11865 9.98444 10.11912 11.30325 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.043265 B = 0.003236 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.016263 B = 8650.358714 C = 8906.831732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.042 4.042 3 Si 1.081 2.919 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.337 4.337 8 H 0.067 0.933 9 N -0.726 5.726 10 C 0.177 3.823 11 H 0.066 0.934 12 C -0.154 4.154 13 C 0.102 3.898 14 N -0.613 5.613 15 C 0.527 3.473 16 O -0.545 6.545 17 C -0.096 4.096 18 C -0.098 4.098 19 C -0.091 4.091 20 C -0.156 4.156 21 C -0.159 4.159 22 C -0.089 4.089 23 C -0.102 4.102 24 C 0.096 3.904 25 H 0.256 0.744 26 H 0.369 0.631 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.409 -21.643 -4.639 23.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.240 4.240 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.467 4.467 8 H 0.085 0.915 9 N -0.367 5.367 10 C 0.065 3.935 11 H 0.084 0.916 12 C -0.196 4.196 13 C -0.022 4.022 14 N -0.347 5.347 15 C 0.316 3.684 16 O -0.423 6.423 17 C -0.118 4.118 18 C -0.136 4.136 19 C -0.128 4.128 20 C -0.174 4.174 21 C -0.177 4.177 22 C -0.126 4.126 23 C -0.140 4.140 24 C -0.027 4.027 25 H 0.067 0.933 26 H 0.203 0.797 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.164 -20.078 -4.013 21.693 hybrid contribution -0.049 -1.734 -0.102 1.738 sum 7.116 -21.813 -4.115 23.310 Atomic orbital electron populations 1.70886 1.06081 1.28550 1.52971 1.25824 0.97015 1.01090 1.00025 0.83233 0.74235 0.75492 0.75909 1.20979 1.22163 1.22175 1.20018 0.92058 0.85461 1.49185 0.91546 1.42268 1.04852 1.00357 1.89271 1.21225 0.94450 0.85160 0.92631 0.91644 1.23405 1.02876 0.91412 1.01859 1.22108 0.96070 0.97649 0.86342 1.48512 1.53710 1.06552 1.25957 1.20421 0.79238 0.82857 0.85921 1.90683 1.44849 1.84851 1.21886 1.20962 0.96590 0.93803 1.00412 1.21133 0.97806 0.93370 1.01258 1.20826 0.98064 0.95944 0.97978 1.22560 0.95140 0.99467 1.00264 1.22542 0.97147 0.97139 1.00857 1.20803 1.00372 0.92193 0.99248 1.21190 0.93407 0.98956 1.00486 1.22550 0.97718 0.83549 0.98922 0.93293 0.79701 0.90741 0.90603 0.91816 0.92015 0.89685 0.90530 0.91504 0.90948 0.91167 0.87553 0.87545 0.90848 0.91077 0.91261 0.90901 0.90586 0.91657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.66 13.70 55.49 0.76 -27.90 16 2 C -0.04 -1.18 5.50 -17.43 -0.10 -1.28 16 3 Si 1.08 25.40 29.92 -169.99 -5.09 20.31 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.34 -9.20 9.97 -15.06 -0.15 -9.35 16 8 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 9 N -0.73 -17.68 5.26 -51.36 -0.27 -17.95 16 10 C 0.18 3.45 3.70 -65.79 -0.24 3.21 16 11 H 0.07 1.32 8.11 -51.93 -0.42 0.90 16 12 C -0.15 -2.49 6.65 -24.87 -0.17 -2.66 16 13 C 0.10 1.32 6.12 -3.04 -0.02 1.30 16 14 N -0.61 -9.47 3.33 -170.49 -0.57 -10.04 16 15 C 0.53 8.13 6.65 -10.98 -0.07 8.05 16 16 O -0.55 -10.46 16.65 5.56 0.09 -10.37 16 17 C -0.10 -1.07 1.72 -92.94 -0.16 -1.23 16 18 C -0.10 -1.04 4.50 -27.30 -0.12 -1.16 16 19 C -0.09 -0.74 5.62 -27.54 -0.15 -0.90 16 20 C -0.16 -1.27 9.34 -35.28 -0.33 -1.60 16 21 C -0.16 -1.28 9.34 -35.28 -0.33 -1.61 16 22 C -0.09 -0.70 5.62 -27.53 -0.15 -0.86 16 23 C -0.10 -1.02 4.89 -27.29 -0.13 -1.16 16 24 C 0.10 1.73 6.57 -2.53 -0.02 1.71 16 25 H 0.26 7.67 6.77 -40.82 -0.28 7.39 16 26 H 0.37 9.31 6.56 -40.82 -0.27 9.05 16 27 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.69 7.69 -51.93 -0.40 0.29 16 31 H 0.08 0.82 6.57 -51.93 -0.34 0.48 16 32 H 0.08 0.93 7.74 -51.93 -0.40 0.52 16 33 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 34 H 0.07 0.55 6.68 -51.93 -0.35 0.20 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.11 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.11 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.07 0.54 6.68 -51.93 -0.35 0.19 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 41 H 0.07 0.82 7.86 -51.93 -0.41 0.42 16 42 H 0.08 1.46 7.99 -51.93 -0.41 1.04 16 43 H 0.07 1.20 8.00 -51.93 -0.42 0.79 16 LS Contribution 337.87 15.07 5.09 5.09 Total: -1.00 -32.06 337.87 -9.17 -41.23 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -7.05 Total: 7.15 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -2.15 Total: -7.53 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: -0.08 Total: -55.89 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -5.09 Total: 20.31 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.06 -9.17 -41.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970739810.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.790 kcal (2) G-P(sol) polarization free energy of solvation -32.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds