Wall clock time and date at job start Tue Mar 31 2020 00:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00147 * 2 1 4 4 H 1.48494 * 109.47281 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47025 * 120.00149 * 3 2 1 6 6 H 1.48506 * 109.46880 * 239.99791 * 3 2 1 7 7 C 1.38819 * 119.99604 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99672 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00304 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00219 * 180.02562 * 9 7 2 11 11 H 1.09000 * 110.88303 * 34.29373 * 10 9 7 12 12 C 1.55155 * 110.99892 * 270.42023 * 10 9 7 13 13 C 1.54374 * 102.91824 * 206.45212 * 12 10 9 14 14 N 1.47016 * 107.28658 * 22.13729 * 13 12 10 15 15 C 1.34781 * 125.64770 * 181.05642 * 14 13 12 16 16 O 1.21277 * 120.00241 * 174.99164 * 15 14 13 17 17 C 1.50702 * 119.99839 * 354.99395 * 15 14 13 18 18 C 1.51849 * 108.64736 * 218.87256 * 17 15 14 19 19 C 1.53024 * 110.73453 * 172.27816 * 18 17 15 20 20 C 1.51373 * 108.52803 * 85.89932 * 19 18 17 21 21 C 1.29521 * 120.36002 * 288.10351 * 20 19 18 22 22 C 1.51379 * 120.36116 * 359.97438 * 21 20 19 23 23 C 1.51846 * 108.65067 * 94.90685 * 17 15 14 24 24 C 1.47421 * 108.70521 * 1.09558 * 14 13 12 25 25 H 0.97001 * 120.00560 * 179.97438 * 1 2 3 26 26 H 0.97004 * 119.99340 * 0.02562 * 9 7 2 27 27 H 1.08998 * 110.72288 * 324.78168 * 12 10 9 28 28 H 1.08999 * 110.72221 * 88.06277 * 12 10 9 29 29 H 1.09005 * 109.84450 * 262.73375 * 13 12 10 30 30 H 1.08998 * 110.03168 * 141.65333 * 13 12 10 31 31 H 1.08993 * 108.60522 * 336.88643 * 17 15 14 32 32 H 1.09004 * 109.22211 * 292.72688 * 18 17 15 33 33 H 1.09000 * 109.22535 * 52.07128 * 18 17 15 34 34 H 1.09001 * 109.66969 * 326.17634 * 19 18 17 35 35 H 1.08997 * 109.78871 * 205.68775 * 19 18 17 36 36 H 1.07998 * 119.82017 * 108.08179 * 20 19 18 37 37 H 1.07996 * 119.82186 * 179.97438 * 21 20 19 38 38 H 1.09002 * 109.60810 * 312.16279 * 22 21 20 39 39 H 1.08998 * 109.75675 * 191.72266 * 22 21 20 40 40 H 1.09000 * 109.22253 * 307.93026 * 23 17 15 41 41 H 1.09001 * 109.21760 * 67.27528 * 23 17 15 42 42 H 1.09007 * 110.36644 * 217.03476 * 24 14 13 43 43 H 1.09001 * 110.46328 * 94.75769 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1040 1.6963 -1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0901 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0579 -3.6569 0.0027 11 1 2.9808 -3.5722 0.5765 12 6 2.3451 -4.1344 -1.4453 13 6 2.4542 -5.6662 -1.2883 14 7 1.7397 -6.0311 -0.0564 15 6 1.6217 -7.2773 0.4435 16 8 1.0855 -7.4517 1.5172 17 6 2.1560 -8.4538 -0.3319 18 6 1.1877 -9.6140 -0.1824 19 6 1.5827 -10.7713 -1.1022 20 6 2.6039 -11.6285 -0.3855 21 6 3.8121 -11.1968 -0.2081 22 6 4.2185 -9.8299 -0.7158 23 6 3.5571 -8.7658 0.1632 24 6 1.1728 -4.8085 0.5412 25 1 -0.4851 -0.8400 -0.0004 26 1 0.3555 -2.3880 0.0016 27 1 1.5205 -3.8728 -2.1084 28 1 3.2829 -3.7158 -1.8106 29 1 3.5019 -5.9564 -1.2089 30 1 1.9960 -6.1628 -2.1436 31 1 2.2115 -8.1798 -1.3854 32 1 1.1954 -9.9568 0.8523 33 1 0.1833 -9.2788 -0.4411 34 1 2.0161 -10.3777 -2.0217 35 1 0.7038 -11.3707 -1.3394 36 1 2.3235 -12.6052 -0.0197 37 1 4.5336 -11.8155 0.3049 38 1 3.8877 -9.7096 -1.7474 39 1 5.3022 -9.7249 -0.6644 40 1 4.1573 -7.8562 0.1386 41 1 3.5023 -9.1310 1.1888 42 1 1.2316 -4.8553 1.6287 43 1 0.1390 -4.6729 0.2233 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970739810.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:44 Heat of formation + Delta-G solvation = -37.848798 kcal Electronic energy + Delta-G solvation = -21924.969562 eV Core-core repulsion = 18776.117157 eV Total energy + Delta-G solvation = -3148.852405 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.56301 -39.48923 -38.39265 -36.28982 -33.94924 -33.07096 -32.77296 -30.97360 -29.39751 -26.88460 -25.46884 -24.94388 -24.24542 -22.10960 -21.71808 -20.11459 -19.51317 -18.88865 -18.41571 -17.48086 -17.09402 -16.72549 -16.37999 -15.74640 -15.47852 -15.31939 -14.73197 -14.55356 -14.37640 -14.00206 -13.98835 -13.89019 -13.57739 -13.32686 -13.10539 -12.79603 -12.61049 -12.50724 -12.41859 -12.13043 -11.89169 -11.82410 -11.68922 -11.55709 -11.30957 -11.24211 -10.95244 -10.88767 -9.89150 -9.75881 -9.18316 -8.40893 -5.37126 1.40191 1.55960 1.59777 1.69608 1.83683 1.86255 2.71528 3.29552 3.41055 3.53955 3.59960 3.77941 3.85018 3.93571 4.07514 4.11456 4.20340 4.22808 4.24373 4.36728 4.43676 4.47177 4.59847 4.61020 4.65892 4.73565 4.85486 4.88116 4.92486 5.03596 5.07799 5.10663 5.15431 5.23080 5.29759 5.32282 5.40118 5.58753 5.82910 6.07894 6.45197 6.47323 7.02294 7.04959 7.92878 8.04794 9.10577 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.043265 B = 0.003236 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.016263 B = 8650.358714 C = 8906.831732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.103 4.103 3 Si 1.129 2.871 4 H -0.296 1.296 5 H -0.279 1.279 6 H -0.273 1.273 7 C -0.331 4.331 8 H 0.072 0.928 9 N -0.741 5.741 10 C 0.170 3.830 11 H 0.059 0.941 12 C -0.143 4.143 13 C 0.107 3.893 14 N -0.613 5.613 15 C 0.522 3.478 16 O -0.591 6.591 17 C -0.085 4.085 18 C -0.096 4.096 19 C -0.085 4.085 20 C -0.166 4.166 21 C -0.165 4.165 22 C -0.084 4.084 23 C -0.099 4.099 24 C 0.105 3.895 25 H 0.244 0.756 26 H 0.360 0.640 27 H 0.062 0.938 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.112 0.888 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.630 -23.083 -6.540 25.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.294 4.294 3 Si 0.953 3.047 4 H -0.222 1.222 5 H -0.205 1.205 6 H -0.199 1.199 7 C -0.462 4.462 8 H 0.090 0.910 9 N -0.383 5.383 10 C 0.060 3.940 11 H 0.077 0.923 12 C -0.184 4.184 13 C -0.015 4.015 14 N -0.346 5.346 15 C 0.313 3.687 16 O -0.472 6.472 17 C -0.107 4.107 18 C -0.134 4.134 19 C -0.122 4.122 20 C -0.184 4.184 21 C -0.183 4.183 22 C -0.121 4.121 23 C -0.137 4.137 24 C -0.020 4.020 25 H 0.054 0.946 26 H 0.193 0.807 27 H 0.081 0.919 28 H 0.104 0.896 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.130 0.870 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.439 -21.583 -5.943 24.295 hybrid contribution -0.736 -1.368 0.555 1.650 sum 8.703 -22.951 -5.389 25.130 Atomic orbital electron populations 1.70995 1.07317 1.27942 1.56063 1.27237 0.97051 1.04764 1.00357 0.82623 0.73364 0.71462 0.77260 1.22177 1.20517 1.19890 1.20363 0.92482 0.86515 1.46873 0.90984 1.42429 1.04638 1.01441 1.89758 1.21379 0.93767 0.83759 0.95103 0.92326 1.23195 1.02838 0.93845 0.98484 1.22255 0.97913 0.95237 0.86083 1.48610 1.53678 1.05782 1.26579 1.21336 0.78268 0.83528 0.85595 1.90663 1.46909 1.85458 1.24160 1.21040 0.97001 0.91681 1.00932 1.21112 0.97434 0.94163 1.00704 1.20792 0.98675 0.94970 0.97747 1.22694 0.95238 0.99946 1.00485 1.22721 0.97386 0.97429 1.00716 1.20796 1.01016 0.90989 0.99281 1.21182 0.92726 0.99882 0.99957 1.22220 0.97229 0.84709 0.97827 0.94566 0.80725 0.91897 0.89605 0.88751 0.88847 0.87041 0.92753 0.92345 0.89508 0.90168 0.86923 0.86781 0.89475 0.89676 0.90916 0.92879 0.92654 0.92558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.83 13.70 21.65 0.30 -60.53 16 2 C -0.10 -5.89 5.50 84.86 0.47 -5.42 16 3 Si 1.13 50.99 29.92 68.60 2.05 53.04 16 4 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.33 -18.15 9.97 84.04 0.84 -17.31 16 8 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 9 N -0.74 -36.73 5.26 -316.39 -1.66 -38.39 16 10 C 0.17 6.59 3.70 46.38 0.17 6.76 16 11 H 0.06 2.35 8.11 -2.39 -0.02 2.33 16 12 C -0.14 -4.33 6.65 31.80 0.21 -4.12 16 13 C 0.11 2.40 6.12 86.75 0.53 2.94 16 14 N -0.61 -18.13 3.33 -811.71 -2.70 -20.83 16 15 C 0.52 15.66 6.65 87.66 0.58 16.24 16 16 O -0.59 -23.22 16.65 -3.02 -0.05 -23.27 16 17 C -0.09 -1.71 1.72 -12.30 -0.02 -1.73 16 18 C -0.10 -1.91 4.50 30.22 0.14 -1.77 16 19 C -0.08 -1.16 5.62 30.07 0.17 -0.99 16 20 C -0.17 -2.31 9.34 27.37 0.26 -2.06 16 21 C -0.16 -2.22 9.34 27.38 0.26 -1.96 16 22 C -0.08 -1.03 5.62 30.08 0.17 -0.86 16 23 C -0.10 -1.75 4.89 30.23 0.15 -1.60 16 24 C 0.10 3.83 6.57 86.85 0.57 4.40 16 25 H 0.24 15.19 6.77 -92.71 -0.63 14.56 16 26 H 0.36 18.89 6.56 -92.71 -0.61 18.28 16 27 H 0.06 2.07 8.14 -2.39 -0.02 2.06 16 28 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.09 1.62 7.69 -2.39 -0.02 1.60 16 31 H 0.11 1.66 6.57 -2.39 -0.02 1.64 16 32 H 0.05 1.31 7.74 -2.38 -0.02 1.30 16 33 H 0.06 1.24 8.10 -2.39 -0.02 1.22 16 34 H 0.09 0.96 6.68 -2.39 -0.02 0.95 16 35 H 0.08 0.95 8.14 -2.39 -0.02 0.94 16 36 H 0.11 1.39 8.06 -2.91 -0.02 1.37 16 37 H 0.11 1.34 8.06 -2.91 -0.02 1.31 16 38 H 0.09 0.86 6.68 -2.39 -0.02 0.85 16 39 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.07 1.23 8.10 -2.39 -0.02 1.21 16 41 H 0.05 1.15 7.86 -2.39 -0.02 1.13 16 42 H 0.05 2.22 7.99 -2.38 -0.02 2.20 16 43 H 0.06 2.15 8.00 -2.39 -0.02 2.13 16 Total: -1.00 -71.42 337.87 2.94 -68.49 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: 0.52 Total: 28.98 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: 4.48 Total: -7.48 kcal Atomic # 7 Polarization: -115.69 SS G_CDS: -4.07 Total: -119.75 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -0.05 Total: -23.27 kcal Atomic # 14 Polarization: 50.99 SS G_CDS: 2.05 Total: 53.04 kcal Total: -71.42 2.94 -68.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970739810.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.637 kcal (2) G-P(sol) polarization free energy of solvation -71.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds