Wall clock time and date at job start Mon Mar 30 2020 23:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48499 * 109.47251 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46954 * 299.99593 * 3 2 1 6 6 H 1.48495 * 109.47001 * 59.99655 * 3 2 1 7 7 C 1.38809 * 120.00401 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00647 * 189.09826 * 7 2 1 9 9 N 1.36943 * 119.99815 * 9.10080 * 7 2 1 10 10 C 1.48143 * 127.83831 * 15.59447 * 9 7 2 11 11 C 1.54391 * 104.61935 * 140.39487 * 10 9 7 12 12 H 1.09006 * 118.17978 * 244.20268 * 11 10 9 13 13 C 1.52996 * 118.12203 * 87.19071 * 11 10 9 14 14 H 1.08996 * 117.44325 * 16.06085 * 13 11 10 15 15 C 1.53000 * 117.44328 * 160.81250 * 13 11 10 16 16 N 1.46494 * 109.47443 * 185.00059 * 15 13 11 17 17 C 1.34770 * 120.00219 * 180.02562 * 16 15 13 18 18 O 1.21287 * 120.00129 * 0.27106 * 17 16 15 19 19 C 1.50702 * 120.00278 * 179.97438 * 17 16 15 20 20 C 1.54272 * 110.03083 * 297.90318 * 19 17 16 21 21 C 1.54958 * 104.16295 * 217.13584 * 20 19 17 22 22 C 1.54886 * 102.77748 * 37.88763 * 21 20 19 23 23 C 1.53875 * 110.03312 * 180.68738 * 19 17 16 24 24 C 1.53007 * 60.55728 * 268.45780 * 13 11 10 25 25 H 1.08996 * 119.54104 * 248.23238 * 24 13 11 26 26 C 1.48148 * 127.83625 * 195.57017 * 9 7 2 27 27 H 0.96999 * 120.00394 * 0.02562 * 1 2 3 28 28 H 1.09002 * 110.40865 * 21.60909 * 10 9 7 29 29 H 1.09005 * 110.40597 * 259.18109 * 10 9 7 30 30 H 1.09001 * 109.46960 * 64.99711 * 15 13 11 31 31 H 1.09001 * 109.46724 * 304.99956 * 15 13 11 32 32 H 0.96996 * 119.99733 * 359.97438 * 16 15 13 33 33 H 1.09004 * 110.01783 * 59.29214 * 19 17 16 34 34 H 1.09004 * 110.48534 * 335.78536 * 20 19 17 35 35 H 1.09008 * 110.48435 * 98.42403 * 20 19 17 36 36 H 1.09007 * 110.72037 * 279.57886 * 21 20 19 37 37 H 1.08995 * 110.92743 * 156.29977 * 21 20 19 38 38 H 1.09002 * 110.48713 * 203.40897 * 22 21 20 39 39 H 1.09001 * 110.48534 * 80.76102 * 22 21 20 40 40 H 1.08999 * 110.02873 * 238.56271 * 23 19 17 41 41 H 1.08997 * 110.03116 * 0.02562 * 23 19 17 42 42 H 1.08991 * 110.40836 * 100.82264 * 26 9 7 43 43 H 1.08997 * 110.50834 * 338.43395 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0801 -1.2079 0.1484 9 7 1.3385 -2.3807 -0.1865 10 6 -0.0340 -2.5712 -0.7106 11 6 0.0644 -3.8173 -1.6167 12 1 -0.1223 -3.6940 -2.6836 13 6 -0.1178 -5.1932 -0.9730 14 1 -0.5672 -5.2280 0.0194 15 6 -0.4665 -6.3628 -1.8957 16 7 -0.7168 -7.5615 -1.0916 17 6 -1.0431 -8.7216 -1.6949 18 8 -1.1246 -8.7746 -2.9039 19 6 -1.3000 -9.9549 -0.8677 20 6 -0.0267 -10.3430 -0.0880 21 6 -0.0255 -11.8924 -0.1109 22 6 -0.5529 -12.2144 -1.5311 23 6 -1.6348 -11.1443 -1.7847 24 6 1.2867 -4.5975 -1.0897 25 1 2.0104 -5.0556 -1.7638 26 6 1.8197 -3.7545 0.0888 27 1 -0.4851 0.8400 -0.0004 28 1 -0.3430 -1.7022 -1.2916 29 1 -0.7317 -2.7502 0.1075 30 1 0.3644 -6.5488 -2.5763 31 1 -1.3595 -6.1181 -2.4709 32 1 -0.6471 -7.5203 -0.1251 33 1 -2.1219 -9.7748 -0.1747 34 1 0.8603 -9.9536 -0.5879 35 1 -0.0802 -9.9758 0.9370 36 1 -0.6975 -12.2898 0.6499 37 1 0.9830 -12.2830 0.0246 38 1 -0.9898 -13.2126 -1.5586 39 1 0.2489 -12.1275 -2.2645 40 1 -2.6188 -11.5420 -1.5361 41 1 -1.6110 -10.8297 -2.8280 42 1 1.4115 -4.1184 1.0316 43 1 2.9091 -3.7801 0.1121 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977734800.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:41 Heat of formation + Delta-G solvation = 1.906986 kcal Electronic energy + Delta-G solvation = -21288.855606 eV Core-core repulsion = 18141.727141 eV Total energy + Delta-G solvation = -3147.128465 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.25038 -38.86079 -37.24446 -34.97822 -33.34841 -30.97297 -29.69268 -28.91020 -27.19837 -27.02133 -24.83687 -22.02167 -21.16347 -20.93158 -20.28525 -19.36238 -19.19780 -17.50319 -16.82471 -16.26471 -15.72075 -15.23653 -14.95826 -14.60329 -14.18124 -13.95913 -13.66152 -13.40539 -13.00059 -12.78815 -12.67999 -11.93588 -11.84980 -11.62257 -11.38966 -11.35731 -11.26371 -11.11455 -11.04817 -10.85744 -10.76219 -10.65272 -10.31725 -10.11809 -9.88068 -9.75259 -9.40105 -9.13018 -8.93740 -8.65623 -6.88369 -5.81584 -3.15906 2.59724 3.13047 3.36667 3.42737 3.45195 4.12505 4.21167 4.32456 4.44626 4.51098 4.87862 4.95859 5.08326 5.17477 5.21730 5.29300 5.34787 5.38205 5.39253 5.43972 5.50701 5.55656 5.65253 5.76788 5.82470 5.87937 5.89524 5.92367 5.96899 6.03543 6.11423 6.21512 6.39524 6.55459 6.65116 6.69906 6.90446 7.34082 7.48554 7.51784 7.70421 8.18904 8.19326 9.09394 9.72193 10.49158 11.32807 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.049175 B = 0.002790 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.257290 B =10032.739927 C =10300.260087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.595 5.595 10 C 0.184 3.816 11 C -0.162 4.162 12 H 0.103 0.897 13 C -0.150 4.150 14 H 0.102 0.898 15 C 0.154 3.846 16 N -0.723 5.723 17 C 0.516 3.484 18 O -0.544 6.544 19 C -0.114 4.114 20 C -0.116 4.116 21 C -0.124 4.124 22 C -0.125 4.125 23 C -0.120 4.120 24 C -0.172 4.172 25 H 0.102 0.898 26 C 0.154 3.846 27 H 0.254 0.746 28 H 0.090 0.910 29 H 0.023 0.977 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.402 0.598 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.089 0.911 42 H 0.024 0.976 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.453 -21.725 0.125 21.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.318 5.318 10 C 0.058 3.942 11 C -0.182 4.182 12 H 0.121 0.879 13 C -0.169 4.169 14 H 0.120 0.880 15 C 0.030 3.970 16 N -0.374 5.374 17 C 0.302 3.698 18 O -0.422 6.422 19 C -0.135 4.135 20 C -0.154 4.154 21 C -0.161 4.161 22 C -0.162 4.162 23 C -0.157 4.157 24 C -0.192 4.192 25 H 0.120 0.880 26 C 0.028 3.972 27 H 0.064 0.936 28 H 0.108 0.892 29 H 0.041 0.959 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.236 0.764 33 H 0.116 0.884 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.108 0.892 42 H 0.041 0.959 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.512 -21.435 -0.722 21.594 hybrid contribution 0.404 0.945 0.470 1.130 sum -2.108 -20.491 -0.252 20.600 Atomic orbital electron populations 1.69903 1.05071 1.25332 1.55876 1.24900 0.95652 0.98000 1.01777 0.86043 0.78881 0.83513 0.77294 1.20361 1.21584 1.21681 1.19046 0.90839 0.82362 1.43240 0.90528 1.45216 1.13355 1.00006 1.73230 1.21065 0.86830 0.92746 0.93558 1.24236 1.02153 0.91742 1.00092 0.87905 1.22528 1.00300 0.93805 1.00227 0.87968 1.20870 1.00996 0.82354 0.92748 1.46042 1.70733 1.09733 1.10853 1.20591 0.76086 0.84494 0.88634 1.90665 1.51891 1.84958 1.14660 1.21959 1.00017 0.93633 0.97926 1.22382 0.96516 0.96528 0.99943 1.22510 1.01275 0.95059 0.97305 1.22370 0.98483 0.98517 0.96845 1.22165 0.98648 0.93450 1.01464 1.23997 0.89825 1.02641 1.02697 0.87964 1.21132 0.97129 0.86016 0.92934 0.93592 0.89172 0.95880 0.91533 0.91211 0.76403 0.88433 0.91003 0.90734 0.91287 0.91332 0.91583 0.91541 0.91530 0.89203 0.95876 0.93204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.73 10.87 55.49 0.60 -26.13 16 2 C -0.01 -0.18 5.40 -17.43 -0.09 -0.27 16 3 Si 0.91 21.88 29.56 -169.99 -5.03 16.85 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 7 C -0.23 -6.31 10.35 -15.06 -0.16 -6.46 16 8 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 9 N -0.59 -15.18 3.38 -168.86 -0.57 -15.75 16 10 C 0.18 4.38 5.70 -2.41 -0.01 4.37 16 11 C -0.16 -3.04 6.85 -89.22 -0.61 -3.65 16 12 H 0.10 1.85 8.14 -51.93 -0.42 1.42 16 13 C -0.15 -2.27 5.39 -90.62 -0.49 -2.76 16 14 H 0.10 1.53 8.04 -51.93 -0.42 1.12 16 15 C 0.15 2.09 5.95 -4.04 -0.02 2.07 16 16 N -0.72 -8.30 5.49 -60.30 -0.33 -8.63 16 17 C 0.52 6.38 7.00 -10.99 -0.08 6.30 16 18 O -0.54 -8.85 15.21 5.55 0.08 -8.77 16 19 C -0.11 -1.01 3.30 -90.65 -0.30 -1.31 16 20 C -0.12 -0.87 6.30 -25.03 -0.16 -1.03 16 21 C -0.12 -0.83 6.91 -24.70 -0.17 -1.00 16 22 C -0.12 -0.95 6.83 -25.07 -0.17 -1.12 16 23 C -0.12 -1.08 6.40 -25.61 -0.16 -1.24 16 24 C -0.17 -3.00 6.74 -89.21 -0.60 -3.61 16 25 H 0.10 1.67 8.12 -51.93 -0.42 1.25 16 26 C 0.15 3.19 7.04 -2.41 -0.02 3.17 16 27 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.09 2.41 6.51 -51.93 -0.34 2.08 16 29 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.96 7.94 -51.93 -0.41 0.55 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.40 3.70 8.39 -40.82 -0.34 3.36 16 33 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.63 7.85 -51.93 -0.41 0.22 16 35 H 0.07 0.46 8.14 -51.92 -0.42 0.03 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.09 1.03 6.39 -51.93 -0.33 0.70 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 343.08 15.07 5.17 5.17 Total: -1.00 -31.58 343.08 -10.41 -41.98 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -7.29 Total: 1.82 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -3.05 Total: -6.55 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: -0.30 Total: -50.51 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.08 Total: -8.77 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.58 -10.41 -41.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977734800.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.892 kcal (2) G-P(sol) polarization free energy of solvation -31.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds