Wall clock time and date at job start Mon Mar 30 2020 23:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48499 * 109.47251 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46954 * 299.99593 * 3 2 1 6 6 H 1.48495 * 109.47001 * 59.99655 * 3 2 1 7 7 C 1.38809 * 120.00401 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00647 * 189.09826 * 7 2 1 9 9 N 1.36943 * 119.99815 * 9.10080 * 7 2 1 10 10 C 1.48143 * 127.83831 * 15.59447 * 9 7 2 11 11 C 1.54391 * 104.61935 * 140.39487 * 10 9 7 12 12 H 1.09006 * 118.17978 * 244.20268 * 11 10 9 13 13 C 1.52996 * 118.12203 * 87.19071 * 11 10 9 14 14 H 1.08996 * 117.44325 * 16.06085 * 13 11 10 15 15 C 1.53000 * 117.44328 * 160.81250 * 13 11 10 16 16 N 1.46494 * 109.47443 * 185.00059 * 15 13 11 17 17 C 1.34770 * 120.00219 * 180.02562 * 16 15 13 18 18 O 1.21287 * 120.00129 * 0.27106 * 17 16 15 19 19 C 1.50702 * 120.00278 * 179.97438 * 17 16 15 20 20 C 1.54272 * 110.03083 * 297.90318 * 19 17 16 21 21 C 1.54958 * 104.16295 * 217.13584 * 20 19 17 22 22 C 1.54886 * 102.77748 * 37.88763 * 21 20 19 23 23 C 1.53875 * 110.03312 * 180.68738 * 19 17 16 24 24 C 1.53007 * 60.55728 * 268.45780 * 13 11 10 25 25 H 1.08996 * 119.54104 * 248.23238 * 24 13 11 26 26 C 1.48148 * 127.83625 * 195.57017 * 9 7 2 27 27 H 0.96999 * 120.00394 * 0.02562 * 1 2 3 28 28 H 1.09002 * 110.40865 * 21.60909 * 10 9 7 29 29 H 1.09005 * 110.40597 * 259.18109 * 10 9 7 30 30 H 1.09001 * 109.46960 * 64.99711 * 15 13 11 31 31 H 1.09001 * 109.46724 * 304.99956 * 15 13 11 32 32 H 0.96996 * 119.99733 * 359.97438 * 16 15 13 33 33 H 1.09004 * 110.01783 * 59.29214 * 19 17 16 34 34 H 1.09004 * 110.48534 * 335.78536 * 20 19 17 35 35 H 1.09008 * 110.48435 * 98.42403 * 20 19 17 36 36 H 1.09007 * 110.72037 * 279.57886 * 21 20 19 37 37 H 1.08995 * 110.92743 * 156.29977 * 21 20 19 38 38 H 1.09002 * 110.48713 * 203.40897 * 22 21 20 39 39 H 1.09001 * 110.48534 * 80.76102 * 22 21 20 40 40 H 1.08999 * 110.02873 * 238.56271 * 23 19 17 41 41 H 1.08997 * 110.03116 * 0.02562 * 23 19 17 42 42 H 1.08991 * 110.40836 * 100.82264 * 26 9 7 43 43 H 1.08997 * 110.50834 * 338.43395 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0801 -1.2079 0.1484 9 7 1.3385 -2.3807 -0.1865 10 6 -0.0340 -2.5712 -0.7106 11 6 0.0644 -3.8173 -1.6167 12 1 -0.1223 -3.6940 -2.6836 13 6 -0.1178 -5.1932 -0.9730 14 1 -0.5672 -5.2280 0.0194 15 6 -0.4665 -6.3628 -1.8957 16 7 -0.7168 -7.5615 -1.0916 17 6 -1.0431 -8.7216 -1.6949 18 8 -1.1246 -8.7746 -2.9039 19 6 -1.3000 -9.9549 -0.8677 20 6 -0.0267 -10.3430 -0.0880 21 6 -0.0255 -11.8924 -0.1109 22 6 -0.5529 -12.2144 -1.5311 23 6 -1.6348 -11.1443 -1.7847 24 6 1.2867 -4.5975 -1.0897 25 1 2.0104 -5.0556 -1.7638 26 6 1.8197 -3.7545 0.0888 27 1 -0.4851 0.8400 -0.0004 28 1 -0.3430 -1.7022 -1.2916 29 1 -0.7317 -2.7502 0.1075 30 1 0.3644 -6.5488 -2.5763 31 1 -1.3595 -6.1181 -2.4709 32 1 -0.6471 -7.5203 -0.1251 33 1 -2.1219 -9.7748 -0.1747 34 1 0.8603 -9.9536 -0.5879 35 1 -0.0802 -9.9758 0.9370 36 1 -0.6975 -12.2898 0.6499 37 1 0.9830 -12.2830 0.0246 38 1 -0.9898 -13.2126 -1.5586 39 1 0.2489 -12.1275 -2.2645 40 1 -2.6188 -11.5420 -1.5361 41 1 -1.6110 -10.8297 -2.8280 42 1 1.4115 -4.1184 1.0316 43 1 2.9091 -3.7801 0.1121 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977734800.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:40 Heat of formation + Delta-G solvation = -17.034119 kcal Electronic energy + Delta-G solvation = -21289.676954 eV Core-core repulsion = 18141.727141 eV Total energy + Delta-G solvation = -3147.949813 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.22543 -40.34817 -38.01411 -36.33529 -34.99905 -32.76660 -30.57795 -29.52492 -28.90825 -28.50137 -26.48328 -23.19290 -22.53969 -21.70028 -21.48972 -20.86703 -20.24669 -18.85284 -18.35844 -17.24494 -16.76101 -16.62185 -16.16465 -15.92137 -15.43571 -15.31282 -14.81976 -14.60417 -14.33289 -14.20182 -14.01495 -13.37691 -13.19589 -12.90832 -12.74671 -12.65210 -12.34698 -12.20472 -12.00630 -11.98425 -11.91460 -11.90954 -11.77553 -11.62186 -11.39272 -11.03560 -10.82809 -10.70552 -10.51407 -10.04325 -8.91498 -7.92818 -5.29022 1.45854 1.46757 1.57563 1.64701 2.14361 2.46756 2.73045 3.25450 3.54519 3.61457 3.69247 3.71103 3.81523 3.86981 4.16652 4.25820 4.29642 4.41705 4.50330 4.54826 4.57637 4.60328 4.65045 4.70753 4.75468 4.83714 4.93203 5.01657 5.02134 5.11264 5.20211 5.26856 5.28116 5.33364 5.39401 5.44428 5.49559 5.52074 5.53103 5.65512 6.17256 6.57595 7.00364 7.26044 7.67530 8.45723 9.21133 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.049175 B = 0.002790 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.257290 B =10032.739927 C =10300.260087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.064 4.064 3 Si 0.980 3.020 4 H -0.265 1.265 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.240 4.240 8 H 0.081 0.919 9 N -0.621 5.621 10 C 0.189 3.811 11 C -0.178 4.178 12 H 0.111 0.889 13 C -0.107 4.107 14 H 0.111 0.889 15 C 0.162 3.838 16 N -0.713 5.713 17 C 0.513 3.487 18 O -0.588 6.588 19 C -0.109 4.109 20 C -0.114 4.114 21 C -0.120 4.120 22 C -0.125 4.125 23 C -0.122 4.122 24 C -0.160 4.160 25 H 0.122 0.878 26 C 0.149 3.851 27 H 0.250 0.750 28 H 0.052 0.948 29 H 0.003 0.997 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.416 0.584 33 H 0.121 0.879 34 H 0.057 0.943 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.052 0.948 40 H 0.080 0.920 41 H 0.059 0.941 42 H 0.030 0.970 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.867 -23.652 1.112 23.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.257 4.257 3 Si 0.808 3.192 4 H -0.189 1.189 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.369 4.369 8 H 0.098 0.902 9 N -0.345 5.345 10 C 0.064 3.936 11 C -0.198 4.198 12 H 0.129 0.871 13 C -0.126 4.126 14 H 0.129 0.871 15 C 0.038 3.962 16 N -0.365 5.365 17 C 0.301 3.699 18 O -0.469 6.469 19 C -0.130 4.130 20 C -0.152 4.152 21 C -0.157 4.157 22 C -0.163 4.163 23 C -0.160 4.160 24 C -0.180 4.180 25 H 0.140 0.860 26 C 0.024 3.976 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.021 0.979 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.253 0.747 33 H 0.139 0.861 34 H 0.076 0.924 35 H 0.114 0.886 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.071 0.929 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.047 0.953 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.905 -23.398 0.296 23.477 hybrid contribution 0.212 1.492 0.171 1.517 sum -1.693 -21.906 0.467 21.976 Atomic orbital electron populations 1.70093 1.06518 1.25673 1.57246 1.25742 0.96517 1.01304 1.02164 0.85002 0.78297 0.79179 0.76770 1.18891 1.21830 1.21743 1.19422 0.91351 0.83677 1.42435 0.90152 1.45538 1.13882 1.01261 1.73846 1.20792 0.86044 0.93642 0.93149 1.23926 1.04698 0.91440 0.99778 0.87114 1.22407 0.97963 0.91945 1.00295 0.87089 1.20639 1.00676 0.82472 0.92382 1.45920 1.70238 1.08884 1.11456 1.21235 0.74939 0.85341 0.88371 1.90656 1.53779 1.85658 1.16763 1.22035 1.01608 0.91577 0.97765 1.22408 0.94976 0.97203 1.00583 1.22517 1.02002 0.94381 0.96792 1.22377 0.97755 0.98784 0.97360 1.22178 1.00019 0.94069 0.99773 1.23927 0.90543 1.02226 1.01311 0.86012 1.21288 0.97701 0.84235 0.94362 0.94121 0.92976 0.97864 0.91850 0.91665 0.74737 0.86072 0.92406 0.88638 0.89734 0.90714 0.90281 0.92883 0.90096 0.92194 0.95262 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.02 10.87 21.65 0.24 -56.79 16 2 C -0.06 -3.62 5.40 84.86 0.46 -3.16 16 3 Si 0.98 45.53 29.56 68.60 2.03 47.56 16 4 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 6 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 7 C -0.24 -13.48 10.35 84.03 0.87 -12.61 16 8 H 0.08 4.32 7.84 -2.91 -0.02 4.30 16 9 N -0.62 -32.00 3.38 -688.14 -2.33 -34.32 16 10 C 0.19 9.27 5.70 86.54 0.49 9.76 16 11 C -0.18 -6.59 6.85 -9.89 -0.07 -6.66 16 12 H 0.11 3.93 8.14 -2.38 -0.02 3.91 16 13 C -0.11 -3.03 5.39 -10.79 -0.06 -3.08 16 14 H 0.11 3.03 8.04 -2.39 -0.02 3.01 16 15 C 0.16 4.08 5.95 86.38 0.51 4.60 16 16 N -0.71 -14.65 5.49 -463.07 -2.54 -17.20 16 17 C 0.51 11.86 7.00 87.66 0.61 12.48 16 18 O -0.59 -18.92 15.21 -3.05 -0.05 -18.96 16 19 C -0.11 -1.67 3.30 -10.81 -0.04 -1.70 16 20 C -0.11 -1.38 6.30 31.70 0.20 -1.18 16 21 C -0.12 -1.24 6.91 31.91 0.22 -1.02 16 22 C -0.13 -1.68 6.83 31.67 0.22 -1.47 16 23 C -0.12 -2.03 6.40 31.32 0.20 -1.83 16 24 C -0.16 -5.30 6.74 -9.88 -0.07 -5.36 16 25 H 0.12 3.61 8.12 -2.39 -0.02 3.59 16 26 C 0.15 6.00 7.04 86.54 0.61 6.61 16 27 H 0.25 14.52 8.31 -92.71 -0.77 13.74 16 28 H 0.05 2.92 6.51 -2.39 -0.02 2.90 16 29 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 30 H 0.06 1.69 7.94 -2.39 -0.02 1.68 16 31 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.42 6.27 8.39 -92.71 -0.78 5.50 16 33 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.06 0.88 7.85 -2.38 -0.02 0.86 16 35 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 36 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 37 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.06 1.38 6.39 -2.39 -0.02 1.37 16 42 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.06 2.17 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -70.34 343.08 1.72 -68.61 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 0.21 Total: 15.75 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: 4.17 Total: -4.65 kcal Atomic # 7 Polarization: -103.67 SS G_CDS: -4.63 Total: -108.30 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.05 Total: -18.96 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -70.34 1.72 -68.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977734800.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.578 kcal (2) G-P(sol) polarization free energy of solvation -70.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds