Wall clock time and date at job start Tue Mar 31 2020 00:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.47425 * 125.72610 * 0.02562 * 9 7 2 11 11 C 1.53378 * 106.51402 * 180.67664 * 10 9 7 12 12 H 1.09005 * 108.94955 * 268.01468 * 11 10 9 13 13 C 1.50892 * 113.07047 * 146.61653 * 11 10 9 14 14 C 1.52841 * 111.56594 * 294.14686 * 13 11 10 15 15 C 1.53298 * 108.21700 * 300.94680 * 14 13 11 16 16 H 1.08992 * 109.63018 * 304.09463 * 15 14 13 17 17 N 1.46499 * 109.63140 * 183.70188 * 15 14 13 18 18 C 1.34781 * 119.99945 * 84.99815 * 17 15 14 19 19 O 1.21270 * 120.00205 * 359.97438 * 18 17 15 20 20 C 1.50698 * 119.99721 * 180.02562 * 18 17 15 21 21 C 1.53004 * 117.49905 * 248.74887 * 20 18 17 22 22 C 1.53000 * 117.49707 * 180.08716 * 20 18 17 23 23 C 1.52620 * 108.50198 * 63.79780 * 15 14 13 24 24 C 1.50858 * 110.55240 * 297.91218 * 23 15 14 25 25 H 1.08999 * 112.13592 * 286.19879 * 24 23 15 26 26 C 1.47617 * 125.72466 * 179.71500 * 9 7 2 27 27 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 28 28 H 1.08991 * 110.04543 * 299.94100 * 10 9 7 29 29 H 1.09006 * 110.04370 * 61.41237 * 10 9 7 30 30 H 1.08994 * 109.06291 * 54.68797 * 13 11 10 31 31 H 1.08998 * 109.06002 * 173.61798 * 13 11 10 32 32 H 1.09004 * 109.71331 * 60.63124 * 14 13 11 33 33 H 1.08999 * 109.71177 * 181.26142 * 14 13 11 34 34 H 0.96997 * 120.00429 * 265.00145 * 17 15 14 35 35 H 1.09000 * 115.55500 * 34.41552 * 20 18 17 36 36 H 1.08999 * 117.49899 * 359.97438 * 21 20 18 37 37 H 1.08999 * 117.50025 * 145.02343 * 21 20 18 38 38 H 1.08998 * 117.50153 * 214.97391 * 22 20 18 39 39 H 1.08994 * 117.49947 * 359.97438 * 22 20 18 40 40 H 1.09009 * 109.18486 * 58.16829 * 23 15 14 41 41 H 1.08998 * 109.18621 * 177.45851 * 23 15 14 42 42 H 1.08997 * 110.43763 * 273.88283 * 26 9 7 43 43 H 1.09001 * 110.43441 * 36.38342 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1413 -2.5352 -0.0005 11 6 -0.4283 -4.0417 0.0173 12 1 -0.5277 -4.3953 -1.0090 13 6 -1.6792 -4.3963 0.7831 14 6 -1.5330 -4.0860 2.2725 15 6 -0.3455 -4.8895 2.8151 16 1 -0.4945 -5.9489 2.6069 17 7 -0.2312 -4.6833 4.2610 18 6 -0.9597 -5.4365 5.1087 19 8 -1.7100 -6.2846 4.6746 20 6 -0.8425 -5.2240 6.5961 21 6 -0.1816 -6.3323 7.4182 22 6 -1.6939 -6.1120 7.5058 23 6 0.9247 -4.4044 2.1218 24 6 0.8442 -4.6512 0.6357 25 1 0.9674 -5.7053 0.3872 26 6 1.9325 -3.7337 -0.0049 27 1 -0.4850 0.8401 0.0004 28 1 -0.5647 -2.0636 0.8862 29 1 -0.5612 -2.0853 -0.9002 30 1 -2.5164 -3.8258 0.3811 31 1 -1.8828 -5.4599 0.6595 32 1 -1.3494 -3.0204 2.4098 33 1 -2.4430 -4.3737 2.7990 34 1 0.3686 -4.0047 4.6083 35 1 -0.6742 -4.1945 6.9121 36 1 0.1681 -7.2153 6.8833 37 1 0.4212 -6.0319 8.2753 38 1 -2.0854 -5.6668 8.4205 39 1 -2.3390 -6.8495 7.0285 40 1 1.0463 -3.3365 2.3033 41 1 1.7825 -4.9373 2.5321 42 1 2.1481 -4.0499 -1.0255 43 1 2.8410 -3.7439 0.5974 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979490205.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:15 Heat of formation + Delta-G solvation = 1.424023 kcal Electronic energy + Delta-G solvation = -22533.387658 eV Core-core repulsion = 19386.238251 eV Total energy + Delta-G solvation = -3147.149408 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.21336 -39.07544 -36.39627 -35.18594 -33.39087 -31.88823 -30.44840 -28.82587 -26.19117 -25.04432 -24.26689 -22.61548 -22.10817 -21.09795 -20.31707 -19.68008 -18.18621 -17.29297 -16.82193 -15.98734 -15.30759 -15.17696 -14.58736 -14.57284 -14.13544 -13.92393 -13.38831 -13.33516 -12.67798 -12.38869 -12.16029 -12.04772 -11.74773 -11.64866 -11.27358 -11.13435 -11.03179 -10.83282 -10.79286 -10.72149 -10.56080 -10.48719 -10.01372 -9.94362 -9.74721 -9.63011 -9.44929 -9.40973 -8.76761 -8.56573 -6.79313 -5.69473 -3.02375 2.54366 3.23124 3.39866 3.44724 3.45751 3.73052 4.50891 4.58253 4.67891 4.71926 4.97592 5.07351 5.15421 5.36829 5.38753 5.51107 5.54351 5.57473 5.66359 5.70051 5.76038 5.80740 5.93931 5.94573 5.96742 6.02569 6.14288 6.36657 6.42290 6.51516 6.55574 6.65838 6.70908 6.73012 6.79191 6.92242 7.06689 7.59545 7.65974 7.68952 7.87512 8.27451 8.34029 9.23668 9.84331 10.52098 11.41957 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021355 B = 0.004487 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.883612 B = 6238.904798 C = 6781.111976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.291 1.291 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.228 4.228 8 H 0.076 0.924 9 N -0.605 5.605 10 C 0.187 3.813 11 C -0.112 4.112 12 H 0.059 0.941 13 C -0.096 4.096 14 C -0.125 4.125 15 C 0.147 3.853 16 H 0.081 0.919 17 N -0.718 5.718 18 C 0.541 3.459 19 O -0.547 6.547 20 C -0.194 4.194 21 C -0.154 4.154 22 C -0.149 4.149 23 C -0.113 4.113 24 C -0.095 4.095 25 H 0.074 0.926 26 C 0.136 3.864 27 H 0.252 0.748 28 H 0.050 0.950 29 H 0.038 0.962 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.401 0.599 35 H 0.123 0.877 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.087 0.913 41 H 0.056 0.944 42 H 0.016 0.984 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.032 -10.871 11.141 15.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.356 4.356 8 H 0.093 0.907 9 N -0.332 5.332 10 C 0.062 3.938 11 C -0.131 4.131 12 H 0.077 0.923 13 C -0.134 4.134 14 C -0.164 4.164 15 C 0.044 3.956 16 H 0.099 0.901 17 N -0.367 5.367 18 C 0.327 3.673 19 O -0.424 6.424 20 C -0.216 4.216 21 C -0.192 4.192 22 C -0.187 4.187 23 C -0.151 4.151 24 C -0.115 4.115 25 H 0.092 0.908 26 C 0.010 3.990 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.235 0.765 35 H 0.141 0.859 36 H 0.117 0.883 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.125 0.875 40 H 0.105 0.895 41 H 0.074 0.926 42 H 0.034 0.966 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.613 -11.225 10.802 15.662 hybrid contribution 0.794 1.432 0.047 1.638 sum -0.818 -9.793 10.850 14.639 Atomic orbital electron populations 1.69958 1.04796 1.25003 1.57106 1.24764 0.95663 0.97488 1.02439 0.86245 0.78466 0.83466 0.77844 1.21657 1.21275 1.21272 1.19004 0.90340 0.82524 1.43737 0.90664 1.44596 1.01719 0.99735 1.87102 1.21044 0.84158 0.87674 1.00888 1.21670 0.93296 0.99977 0.98148 0.92253 1.20828 0.97972 1.00262 0.94352 1.21924 0.97387 1.01092 0.95973 1.21049 0.96450 1.00209 0.77921 0.90123 1.46086 1.44653 1.38822 1.07109 1.19606 0.79706 0.80799 0.87147 1.90671 1.38338 1.34671 1.78769 1.22245 1.09570 0.98602 0.91149 1.22929 0.96181 0.98803 1.01246 1.22939 0.93868 1.01880 0.99974 1.21354 0.95176 1.03404 0.95150 1.21878 0.97341 0.98036 0.94203 0.90818 1.21908 0.94235 0.86334 0.96521 0.93798 0.93214 0.94332 0.91930 0.92856 0.90690 0.92373 0.76530 0.85901 0.88335 0.87904 0.88077 0.87469 0.89487 0.92559 0.96608 0.94304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.64 10.34 55.49 0.57 -26.07 16 2 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 3 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 7 C -0.23 -6.22 10.29 -15.06 -0.15 -6.38 16 8 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.61 -15.01 2.90 -169.42 -0.49 -15.50 16 10 C 0.19 4.41 4.38 -3.34 -0.01 4.39 16 11 C -0.11 -2.07 2.75 -90.93 -0.25 -2.32 16 12 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 13 C -0.10 -1.58 5.34 -27.87 -0.15 -1.73 16 14 C -0.13 -2.07 5.41 -26.66 -0.14 -2.22 16 15 C 0.15 2.26 2.41 -67.97 -0.16 2.09 16 16 H 0.08 1.31 7.60 -51.93 -0.39 0.92 16 17 N -0.72 -9.69 5.10 -53.85 -0.27 -9.96 16 18 C 0.54 7.60 7.58 -10.98 -0.08 7.51 16 19 O -0.55 -9.60 15.93 5.57 0.09 -9.52 16 20 C -0.19 -2.02 6.19 -91.77 -0.57 -2.59 16 21 C -0.15 -1.33 10.24 -26.69 -0.27 -1.61 16 22 C -0.15 -1.40 10.05 -26.69 -0.27 -1.67 16 23 C -0.11 -1.81 4.20 -28.00 -0.12 -1.93 16 24 C -0.09 -1.62 3.61 -89.48 -0.32 -1.94 16 25 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 26 C 0.14 2.76 6.48 -1.77 -0.01 2.75 16 27 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.05 1.28 5.78 -51.93 -0.30 0.98 16 29 H 0.04 1.04 7.51 -51.93 -0.39 0.65 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.39 6.75 -51.93 -0.35 1.04 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.40 4.65 8.61 -40.82 -0.35 4.30 16 35 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.11 1.17 7.67 -51.93 -0.40 0.77 16 40 H 0.09 1.66 7.12 -51.92 -0.37 1.29 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.04 0.76 7.95 -51.93 -0.41 0.35 16 LS Contribution 334.22 15.07 5.04 5.04 Total: -1.00 -31.13 334.22 -9.87 -41.00 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -7.16 Total: 4.09 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -2.62 Total: -5.91 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: -0.19 Total: -51.52 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.52 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.13 -9.87 -41.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979490205.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.420 kcal (2) G-P(sol) polarization free energy of solvation -31.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds