Wall clock time and date at job start Tue Mar 31 2020 00:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.47425 * 125.72610 * 0.02562 * 9 7 2 11 11 C 1.53378 * 106.51402 * 180.67664 * 10 9 7 12 12 H 1.09005 * 108.94955 * 268.01468 * 11 10 9 13 13 C 1.50892 * 113.07047 * 146.61653 * 11 10 9 14 14 C 1.52841 * 111.56594 * 294.14686 * 13 11 10 15 15 C 1.53298 * 108.21700 * 300.94680 * 14 13 11 16 16 H 1.08992 * 109.63018 * 304.09463 * 15 14 13 17 17 N 1.46499 * 109.63140 * 183.70188 * 15 14 13 18 18 C 1.34781 * 119.99945 * 84.99815 * 17 15 14 19 19 O 1.21270 * 120.00205 * 359.97438 * 18 17 15 20 20 C 1.50698 * 119.99721 * 180.02562 * 18 17 15 21 21 C 1.53004 * 117.49905 * 248.74887 * 20 18 17 22 22 C 1.53000 * 117.49707 * 180.08716 * 20 18 17 23 23 C 1.52620 * 108.50198 * 63.79780 * 15 14 13 24 24 C 1.50858 * 110.55240 * 297.91218 * 23 15 14 25 25 H 1.08999 * 112.13592 * 286.19879 * 24 23 15 26 26 C 1.47617 * 125.72466 * 179.71500 * 9 7 2 27 27 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 28 28 H 1.08991 * 110.04543 * 299.94100 * 10 9 7 29 29 H 1.09006 * 110.04370 * 61.41237 * 10 9 7 30 30 H 1.08994 * 109.06291 * 54.68797 * 13 11 10 31 31 H 1.08998 * 109.06002 * 173.61798 * 13 11 10 32 32 H 1.09004 * 109.71331 * 60.63124 * 14 13 11 33 33 H 1.08999 * 109.71177 * 181.26142 * 14 13 11 34 34 H 0.96997 * 120.00429 * 265.00145 * 17 15 14 35 35 H 1.09000 * 115.55500 * 34.41552 * 20 18 17 36 36 H 1.08999 * 117.49899 * 359.97438 * 21 20 18 37 37 H 1.08999 * 117.50025 * 145.02343 * 21 20 18 38 38 H 1.08998 * 117.50153 * 214.97391 * 22 20 18 39 39 H 1.08994 * 117.49947 * 359.97438 * 22 20 18 40 40 H 1.09009 * 109.18486 * 58.16829 * 23 15 14 41 41 H 1.08998 * 109.18621 * 177.45851 * 23 15 14 42 42 H 1.08997 * 110.43763 * 273.88283 * 26 9 7 43 43 H 1.09001 * 110.43441 * 36.38342 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1413 -2.5352 -0.0005 11 6 -0.4283 -4.0417 0.0173 12 1 -0.5277 -4.3953 -1.0090 13 6 -1.6792 -4.3963 0.7831 14 6 -1.5330 -4.0860 2.2725 15 6 -0.3455 -4.8895 2.8151 16 1 -0.4945 -5.9489 2.6069 17 7 -0.2312 -4.6833 4.2610 18 6 -0.9597 -5.4365 5.1087 19 8 -1.7100 -6.2846 4.6746 20 6 -0.8425 -5.2240 6.5961 21 6 -0.1816 -6.3323 7.4182 22 6 -1.6939 -6.1120 7.5058 23 6 0.9247 -4.4044 2.1218 24 6 0.8442 -4.6512 0.6357 25 1 0.9674 -5.7053 0.3872 26 6 1.9325 -3.7337 -0.0049 27 1 -0.4850 0.8401 0.0004 28 1 -0.5647 -2.0636 0.8862 29 1 -0.5612 -2.0853 -0.9002 30 1 -2.5164 -3.8258 0.3811 31 1 -1.8828 -5.4599 0.6595 32 1 -1.3494 -3.0204 2.4098 33 1 -2.4430 -4.3737 2.7990 34 1 0.3686 -4.0047 4.6083 35 1 -0.6742 -4.1945 6.9121 36 1 0.1681 -7.2153 6.8833 37 1 0.4212 -6.0319 8.2753 38 1 -2.0854 -5.6668 8.4205 39 1 -2.3390 -6.8495 7.0285 40 1 1.0463 -3.3365 2.3033 41 1 1.7825 -4.9373 2.5321 42 1 2.1481 -4.0499 -1.0255 43 1 2.8410 -3.7439 0.5974 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000979490205.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:15 Heat of formation + Delta-G solvation = -17.285149 kcal Electronic energy + Delta-G solvation = -22534.198949 eV Core-core repulsion = 19386.238251 eV Total energy + Delta-G solvation = -3147.960698 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.46898 -40.39931 -37.41879 -36.53189 -34.97235 -33.59902 -31.95836 -30.51228 -27.78502 -26.84604 -25.40818 -23.66953 -23.28998 -22.44390 -21.75073 -20.99562 -19.59238 -18.82640 -18.31384 -17.19658 -16.77517 -16.50105 -16.17716 -15.74033 -15.63965 -15.21448 -14.88329 -14.77936 -13.98588 -13.85572 -13.66131 -13.45176 -13.32202 -12.94587 -12.75085 -12.66577 -12.64837 -12.41736 -12.22055 -12.09387 -11.76863 -11.66818 -11.52801 -11.47677 -11.27901 -11.10923 -10.98813 -10.74203 -10.62079 -9.98651 -8.82426 -7.80687 -5.14986 1.46430 1.49055 1.51776 1.55331 2.18512 2.51934 2.94925 3.37500 3.57025 3.71670 3.77558 3.84993 3.87673 4.01219 4.03402 4.19638 4.23346 4.32732 4.35159 4.54857 4.59544 4.61245 4.72917 4.75829 4.87549 4.92724 4.97826 5.04763 5.06010 5.09246 5.18361 5.24934 5.26378 5.29313 5.36792 5.53302 5.59109 5.63648 5.75428 5.89693 6.23882 6.59377 7.14202 7.26495 7.82576 8.48781 9.29232 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021355 B = 0.004487 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.883612 B = 6238.904798 C = 6781.111976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.064 4.064 3 Si 0.973 3.027 4 H -0.297 1.297 5 H -0.275 1.275 6 H -0.280 1.280 7 C -0.239 4.239 8 H 0.081 0.919 9 N -0.624 5.624 10 C 0.200 3.800 11 C -0.102 4.102 12 H 0.066 0.934 13 C -0.092 4.092 14 C -0.118 4.118 15 C 0.157 3.843 16 H 0.082 0.918 17 N -0.713 5.713 18 C 0.537 3.463 19 O -0.586 6.586 20 C -0.206 4.206 21 C -0.138 4.138 22 C -0.151 4.151 23 C -0.102 4.102 24 C -0.080 4.080 25 H 0.111 0.889 26 C 0.130 3.870 27 H 0.244 0.756 28 H 0.020 0.980 29 H -0.007 1.007 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.410 0.590 35 H 0.144 0.856 36 H 0.089 0.911 37 H 0.131 0.869 38 H 0.125 0.875 39 H 0.086 0.914 40 H 0.054 0.946 41 H 0.079 0.921 42 H 0.020 0.980 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.271 -12.246 12.618 17.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.257 4.257 3 Si 0.802 3.198 4 H -0.224 1.224 5 H -0.201 1.201 6 H -0.207 1.207 7 C -0.368 4.368 8 H 0.099 0.901 9 N -0.350 5.350 10 C 0.075 3.925 11 C -0.122 4.122 12 H 0.084 0.916 13 C -0.130 4.130 14 C -0.157 4.157 15 C 0.053 3.947 16 H 0.100 0.900 17 N -0.362 5.362 18 C 0.325 3.675 19 O -0.467 6.467 20 C -0.227 4.227 21 C -0.175 4.175 22 C -0.189 4.189 23 C -0.140 4.140 24 C -0.100 4.100 25 H 0.129 0.871 26 C 0.005 3.995 27 H 0.053 0.947 28 H 0.038 0.962 29 H 0.011 0.989 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.246 0.754 35 H 0.162 0.838 36 H 0.108 0.892 37 H 0.149 0.851 38 H 0.144 0.856 39 H 0.105 0.895 40 H 0.072 0.928 41 H 0.098 0.902 42 H 0.038 0.962 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.267 -12.617 12.290 17.615 hybrid contribution 0.403 1.838 -0.434 1.931 sum 0.135 -10.778 11.857 16.024 Atomic orbital electron populations 1.70192 1.06217 1.25018 1.58498 1.25563 0.96472 1.00725 1.02951 0.85226 0.77144 0.79229 0.78182 1.22363 1.20138 1.20653 1.19410 0.90921 0.83827 1.42639 0.90112 1.44868 1.02382 1.00946 1.86844 1.20731 0.83616 0.90889 0.97264 1.21543 0.95142 0.96173 0.99302 0.91551 1.20799 0.96692 1.01654 0.93846 1.21819 0.98043 0.99584 0.96253 1.20820 0.95227 0.99649 0.79025 0.90013 1.46031 1.44780 1.39020 1.06401 1.20249 0.78677 0.79844 0.88704 1.90648 1.39945 1.36370 1.79738 1.22291 1.11416 1.00343 0.88636 1.23044 0.95907 0.97405 1.01161 1.23016 0.94292 1.01214 1.00332 1.21212 0.96470 1.01574 0.94793 1.21909 0.94599 0.99168 0.94321 0.87095 1.22113 0.95441 0.84783 0.97167 0.94678 0.96190 0.98850 0.92531 0.90253 0.93418 0.92615 0.75377 0.83796 0.89228 0.85053 0.85636 0.89540 0.92767 0.90203 0.96211 0.93383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.20 10.34 21.65 0.22 -56.98 16 2 C -0.06 -3.63 5.49 84.86 0.47 -3.17 16 3 Si 0.97 45.59 29.55 68.60 2.03 47.62 16 4 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 6 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 7 C -0.24 -13.23 10.29 84.03 0.86 -12.36 16 8 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 9 N -0.62 -31.40 2.90 -689.91 -2.00 -33.40 16 10 C 0.20 9.78 4.38 86.33 0.38 10.16 16 11 C -0.10 -3.73 2.75 -11.00 -0.03 -3.76 16 12 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 13 C -0.09 -2.95 5.34 29.86 0.16 -2.79 16 14 C -0.12 -3.91 5.41 30.64 0.17 -3.75 16 15 C 0.16 4.60 2.41 44.97 0.11 4.71 16 16 H 0.08 2.46 7.60 -2.39 -0.02 2.44 16 17 N -0.71 -18.34 5.10 -442.68 -2.26 -20.60 16 18 C 0.54 14.43 7.58 87.66 0.66 15.09 16 19 O -0.59 -20.23 15.93 -3.00 -0.05 -20.28 16 20 C -0.21 -3.83 6.19 -11.54 -0.07 -3.91 16 21 C -0.14 -2.00 10.24 30.62 0.31 -1.69 16 22 C -0.15 -2.53 10.05 30.62 0.31 -2.22 16 23 C -0.10 -3.12 4.20 29.77 0.13 -2.99 16 24 C -0.08 -2.57 3.61 -10.06 -0.04 -2.61 16 25 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 26 C 0.13 5.10 6.48 87.24 0.57 5.66 16 27 H 0.24 14.44 8.31 -92.71 -0.77 13.67 16 28 H 0.02 1.09 5.78 -2.39 -0.01 1.07 16 29 H -0.01 -0.39 7.51 -2.38 -0.02 -0.40 16 30 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.05 1.83 6.75 -2.39 -0.02 1.82 16 33 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.41 8.97 8.61 -92.71 -0.80 8.17 16 35 H 0.14 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.09 1.83 7.67 -2.39 -0.02 1.81 16 40 H 0.05 2.04 7.12 -2.38 -0.02 2.03 16 41 H 0.08 2.07 8.14 -2.39 -0.02 2.06 16 42 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.05 1.79 7.95 -2.39 -0.02 1.77 16 Total: -1.00 -69.89 334.22 2.12 -67.77 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.20 Total: 19.49 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: 3.98 Total: -3.62 kcal Atomic # 7 Polarization: -106.94 SS G_CDS: -4.03 Total: -110.98 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.05 Total: -20.28 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -69.89 2.12 -67.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979490205.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.483 kcal (2) G-P(sol) polarization free energy of solvation -69.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds