Wall clock time and date at job start Tue Mar 31 2020 00:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31607 * 1 3 3 Si 1.86800 * 120.00409 * 2 1 4 4 H 1.48500 * 109.47110 * 240.00274 * 3 2 1 5 5 H 1.48501 * 109.46893 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47361 * 119.99661 * 3 2 1 7 7 C 1.38818 * 120.00014 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00170 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99674 * 0.02562 * 7 2 1 10 10 C 1.47169 * 125.65154 * 359.97233 * 9 7 2 11 11 C 1.55340 * 106.96687 * 180.97888 * 10 9 7 12 12 H 1.09001 * 112.36617 * 214.64915 * 11 10 9 13 13 C 1.52999 * 106.42163 * 91.62365 * 11 10 9 14 14 C 1.52596 * 111.05406 * 197.21446 * 13 11 10 15 15 C 1.53330 * 108.40751 * 62.35210 * 14 13 11 16 16 H 1.09001 * 109.73694 * 55.56070 * 15 14 13 17 17 N 1.46499 * 109.74044 * 176.21439 * 15 14 13 18 18 C 1.34777 * 120.00199 * 274.34727 * 17 15 14 19 19 O 1.21283 * 119.99750 * 359.97438 * 18 17 15 20 20 C 1.50702 * 119.99928 * 180.27479 * 18 17 15 21 21 C 1.52999 * 117.49844 * 248.46973 * 20 18 17 22 22 C 1.52996 * 117.49546 * 179.81078 * 20 18 17 23 23 C 1.52826 * 108.13029 * 295.89101 * 15 14 13 24 24 C 1.50740 * 111.74467 * 58.84863 * 23 15 14 25 25 H 1.09000 * 108.78624 * 186.65653 * 24 23 15 26 26 C 1.47818 * 125.64656 * 180.02562 * 9 7 2 27 27 H 0.97004 * 120.00251 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.95641 * 61.60110 * 10 9 7 29 29 H 1.08993 * 109.96471 * 300.36000 * 10 9 7 30 30 H 1.08992 * 109.16034 * 76.80869 * 13 11 10 31 31 H 1.08999 * 109.15897 * 317.61434 * 13 11 10 32 32 H 1.08998 * 109.67591 * 302.61865 * 14 13 11 33 33 H 1.08997 * 109.70383 * 182.10241 * 14 13 11 34 34 H 0.97000 * 119.99484 * 94.33824 * 17 15 14 35 35 H 1.08995 * 115.54871 * 34.13521 * 20 18 17 36 36 H 1.09007 * 117.49732 * 359.97438 * 21 20 18 37 37 H 1.08998 * 117.49972 * 145.01907 * 21 20 18 38 38 H 1.09004 * 117.49547 * 214.97632 * 22 20 18 39 39 H 1.08995 * 117.50518 * 359.97085 * 22 20 18 40 40 H 1.08999 * 109.02215 * 179.48208 * 23 15 14 41 41 H 1.08998 * 109.02275 * 298.31374 * 23 15 14 42 42 H 1.08997 * 110.51026 * 321.97446 * 26 9 7 43 43 H 1.09005 * 110.51110 * 84.68511 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1391 -2.5329 0.0006 11 6 -0.4440 -4.0559 0.0259 12 1 -1.3376 -4.3096 -0.5444 13 6 -0.5721 -4.4469 1.4996 14 6 -0.4497 -5.9574 1.6786 15 6 0.9457 -6.3888 1.2119 16 1 1.7054 -5.8244 1.7525 17 7 1.1276 -7.8219 1.4551 18 6 1.5557 -8.2523 2.6584 19 8 1.7907 -7.4530 3.5398 20 6 1.7488 -9.7261 2.9065 21 6 0.7889 -10.4100 3.8821 22 6 2.2409 -10.1507 4.2916 23 6 1.0566 -6.1010 -0.2849 24 6 0.8404 -4.6408 -0.5904 25 1 0.8115 -4.5089 -1.6720 26 6 1.9349 -3.7348 0.0016 27 1 -0.4851 0.8401 -0.0004 28 1 -0.5574 -2.0846 -0.9007 29 1 -0.5604 -2.0543 0.8845 30 1 -1.5422 -4.1197 1.8735 31 1 0.2151 -3.9541 2.0702 32 1 -1.2089 -6.4606 1.0799 33 1 -0.5812 -6.2147 2.7296 34 1 0.9399 -8.4611 0.7500 35 1 2.0936 -10.3057 2.0503 36 1 0.0179 -9.7937 4.3448 37 1 0.5026 -11.4397 3.6679 38 1 2.9092 -11.0101 4.3466 39 1 2.4254 -9.3642 5.0232 40 1 2.0478 -6.3942 -0.6306 41 1 0.3082 -6.6890 -0.8161 42 1 2.8255 -3.7514 -0.6266 43 1 2.1777 -4.0433 1.0185 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979490214.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:18 Heat of formation + Delta-G solvation = 1.264739 kcal Electronic energy + Delta-G solvation = -22307.610475 eV Core-core repulsion = 19160.454160 eV Total energy + Delta-G solvation = -3147.156315 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.28146 -39.05665 -36.47966 -35.33184 -33.35519 -31.59267 -30.79287 -28.93439 -26.23723 -25.19573 -23.93242 -22.68318 -22.13144 -21.36283 -20.21611 -19.85482 -18.30423 -17.40812 -16.71739 -16.40093 -15.31945 -15.02896 -14.73621 -14.40881 -14.02028 -13.80384 -13.56776 -13.46218 -12.74737 -12.49763 -12.35641 -12.04068 -11.81418 -11.64926 -11.56949 -11.07640 -10.98609 -10.92278 -10.85621 -10.73277 -10.62284 -10.51537 -9.98697 -9.91169 -9.84262 -9.59307 -9.48192 -9.37661 -8.89968 -8.53166 -6.74687 -5.64600 -2.97237 2.46098 3.09752 3.44854 3.48863 3.50110 3.65367 4.49013 4.55438 4.58403 4.63864 4.87636 4.95754 4.99045 5.31972 5.33240 5.44471 5.49016 5.50928 5.58584 5.63786 5.68858 5.76719 5.85154 5.87550 5.89107 5.99730 6.11868 6.21061 6.30669 6.40311 6.48321 6.54596 6.60719 6.70689 6.85428 6.97700 7.07213 7.52374 7.62739 7.69280 7.89383 8.25194 8.32346 9.28982 9.89202 10.56480 11.47020 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033351 B = 0.003730 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.348475 B = 7504.399755 C = 7747.952183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.009 4.009 3 Si 0.911 3.089 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.226 4.226 8 H 0.076 0.924 9 N -0.606 5.606 10 C 0.183 3.817 11 C -0.113 4.113 12 H 0.073 0.927 13 C -0.104 4.104 14 C -0.123 4.123 15 C 0.143 3.857 16 H 0.094 0.906 17 N -0.721 5.721 18 C 0.539 3.461 19 O -0.537 6.537 20 C -0.194 4.194 21 C -0.154 4.154 22 C -0.149 4.149 23 C -0.107 4.107 24 C -0.092 4.092 25 H 0.071 0.929 26 C 0.139 3.861 27 H 0.252 0.748 28 H 0.038 0.962 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.397 0.603 35 H 0.122 0.878 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.108 0.892 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.035 0.965 43 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.566 -21.550 2.045 21.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.355 4.355 8 H 0.094 0.906 9 N -0.332 5.332 10 C 0.059 3.941 11 C -0.132 4.132 12 H 0.091 0.909 13 C -0.142 4.142 14 C -0.161 4.161 15 C 0.039 3.961 16 H 0.112 0.888 17 N -0.371 5.371 18 C 0.325 3.675 19 O -0.414 6.414 20 C -0.216 4.216 21 C -0.192 4.192 22 C -0.187 4.187 23 C -0.145 4.145 24 C -0.112 4.112 25 H 0.089 0.911 26 C 0.013 3.987 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.231 0.769 35 H 0.140 0.860 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.126 0.874 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.054 0.946 43 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -0.441 -20.696 2.674 20.873 hybrid contribution 0.337 0.587 -0.516 0.851 sum -0.104 -20.109 2.158 20.225 Atomic orbital electron populations 1.69945 1.04836 1.25000 1.57321 1.24779 0.95706 0.97570 1.02486 0.86211 0.78446 0.83333 0.77859 1.21267 1.21654 1.21213 1.19031 0.90400 0.82539 1.43498 0.90599 1.44555 1.01670 0.99795 1.87224 1.21459 0.84264 0.87548 1.00850 1.22453 0.96229 0.99666 0.94820 0.90906 1.21461 1.02136 0.93601 0.97051 1.21883 0.95994 0.97509 1.00734 1.21121 0.98463 0.79716 0.96763 0.88794 1.46054 1.68046 1.08909 1.14065 1.19639 0.76354 0.89157 0.82338 1.90726 1.50557 1.56241 1.43896 1.22225 1.08753 0.94092 0.96494 1.22938 0.93879 1.01189 1.01160 1.22955 0.96748 1.03223 0.95735 1.21146 1.01655 0.97504 0.94204 1.21358 0.97281 0.92167 1.00409 0.91075 1.21494 0.94114 0.86151 0.96918 0.93805 0.94390 0.93363 0.92308 0.91202 0.92322 0.92272 0.76943 0.86019 0.88246 0.87910 0.88039 0.87350 0.91837 0.91990 0.94631 0.96167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.60 10.32 55.49 0.57 -27.02 16 2 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 3 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.23 -6.47 10.28 -15.06 -0.15 -6.62 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.61 -15.76 3.41 -169.61 -0.58 -16.33 16 10 C 0.18 4.48 4.66 -2.44 -0.01 4.47 16 11 C -0.11 -2.07 3.61 -88.86 -0.32 -2.39 16 12 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 13 C -0.10 -1.81 4.62 -26.94 -0.12 -1.94 16 14 C -0.12 -1.78 5.53 -26.77 -0.15 -1.93 16 15 C 0.14 2.01 2.29 -67.85 -0.16 1.85 16 16 H 0.09 1.63 6.25 -51.93 -0.32 1.31 16 17 N -0.72 -8.16 5.10 -53.73 -0.27 -8.43 16 18 C 0.54 6.95 7.59 -10.98 -0.08 6.87 16 19 O -0.54 -9.39 15.93 5.55 0.09 -9.30 16 20 C -0.19 -1.74 6.19 -91.77 -0.57 -2.31 16 21 C -0.15 -1.19 10.24 -26.69 -0.27 -1.46 16 22 C -0.15 -1.28 10.05 -26.70 -0.27 -1.55 16 23 C -0.11 -1.40 4.85 -27.95 -0.14 -1.54 16 24 C -0.09 -1.58 2.81 -90.75 -0.26 -1.84 16 25 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 26 C 0.14 2.93 6.19 -2.84 -0.02 2.92 16 27 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.04 1.03 7.51 -51.93 -0.39 0.64 16 29 H 0.05 1.31 6.99 -51.93 -0.36 0.95 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.07 1.42 7.15 -51.93 -0.37 1.05 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.40 3.20 8.61 -40.82 -0.35 2.85 16 35 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.10 0.87 8.14 -51.92 -0.42 0.45 16 37 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.11 1.14 7.67 -51.93 -0.40 0.74 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.02 0.44 6.15 -51.93 -0.32 0.12 16 LS Contribution 334.20 15.07 5.04 5.04 Total: -1.00 -32.96 334.20 -9.93 -42.89 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -7.14 Total: 1.42 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -2.61 Total: -5.84 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: -0.28 Total: -51.79 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.09 Total: -9.30 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.96 -9.93 -42.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979490214.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.155 kcal (2) G-P(sol) polarization free energy of solvation -32.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds