Wall clock time and date at job start Tue Mar 31 2020 00:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31607 * 1 3 3 Si 1.86800 * 120.00409 * 2 1 4 4 H 1.48500 * 109.47110 * 240.00274 * 3 2 1 5 5 H 1.48501 * 109.46893 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47361 * 119.99661 * 3 2 1 7 7 C 1.38818 * 120.00014 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00170 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99674 * 0.02562 * 7 2 1 10 10 C 1.47169 * 125.65154 * 359.97233 * 9 7 2 11 11 C 1.55340 * 106.96687 * 180.97888 * 10 9 7 12 12 H 1.09001 * 112.36617 * 214.64915 * 11 10 9 13 13 C 1.52999 * 106.42163 * 91.62365 * 11 10 9 14 14 C 1.52596 * 111.05406 * 197.21446 * 13 11 10 15 15 C 1.53330 * 108.40751 * 62.35210 * 14 13 11 16 16 H 1.09001 * 109.73694 * 55.56070 * 15 14 13 17 17 N 1.46499 * 109.74044 * 176.21439 * 15 14 13 18 18 C 1.34777 * 120.00199 * 274.34727 * 17 15 14 19 19 O 1.21283 * 119.99750 * 359.97438 * 18 17 15 20 20 C 1.50702 * 119.99928 * 180.27479 * 18 17 15 21 21 C 1.52999 * 117.49844 * 248.46973 * 20 18 17 22 22 C 1.52996 * 117.49546 * 179.81078 * 20 18 17 23 23 C 1.52826 * 108.13029 * 295.89101 * 15 14 13 24 24 C 1.50740 * 111.74467 * 58.84863 * 23 15 14 25 25 H 1.09000 * 108.78624 * 186.65653 * 24 23 15 26 26 C 1.47818 * 125.64656 * 180.02562 * 9 7 2 27 27 H 0.97004 * 120.00251 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.95641 * 61.60110 * 10 9 7 29 29 H 1.08993 * 109.96471 * 300.36000 * 10 9 7 30 30 H 1.08992 * 109.16034 * 76.80869 * 13 11 10 31 31 H 1.08999 * 109.15897 * 317.61434 * 13 11 10 32 32 H 1.08998 * 109.67591 * 302.61865 * 14 13 11 33 33 H 1.08997 * 109.70383 * 182.10241 * 14 13 11 34 34 H 0.97000 * 119.99484 * 94.33824 * 17 15 14 35 35 H 1.08995 * 115.54871 * 34.13521 * 20 18 17 36 36 H 1.09007 * 117.49732 * 359.97438 * 21 20 18 37 37 H 1.08998 * 117.49972 * 145.01907 * 21 20 18 38 38 H 1.09004 * 117.49547 * 214.97632 * 22 20 18 39 39 H 1.08995 * 117.50518 * 359.97085 * 22 20 18 40 40 H 1.08999 * 109.02215 * 179.48208 * 23 15 14 41 41 H 1.08998 * 109.02275 * 298.31374 * 23 15 14 42 42 H 1.08997 * 110.51026 * 321.97446 * 26 9 7 43 43 H 1.09005 * 110.51110 * 84.68511 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1391 -2.5329 0.0006 11 6 -0.4440 -4.0559 0.0259 12 1 -1.3376 -4.3096 -0.5444 13 6 -0.5721 -4.4469 1.4996 14 6 -0.4497 -5.9574 1.6786 15 6 0.9457 -6.3888 1.2119 16 1 1.7054 -5.8244 1.7525 17 7 1.1276 -7.8219 1.4551 18 6 1.5557 -8.2523 2.6584 19 8 1.7907 -7.4530 3.5398 20 6 1.7488 -9.7261 2.9065 21 6 0.7889 -10.4100 3.8821 22 6 2.2409 -10.1507 4.2916 23 6 1.0566 -6.1010 -0.2849 24 6 0.8404 -4.6408 -0.5904 25 1 0.8115 -4.5089 -1.6720 26 6 1.9349 -3.7348 0.0016 27 1 -0.4851 0.8401 -0.0004 28 1 -0.5574 -2.0846 -0.9007 29 1 -0.5604 -2.0543 0.8845 30 1 -1.5422 -4.1197 1.8735 31 1 0.2151 -3.9541 2.0702 32 1 -1.2089 -6.4606 1.0799 33 1 -0.5812 -6.2147 2.7296 34 1 0.9399 -8.4611 0.7500 35 1 2.0936 -10.3057 2.0503 36 1 0.0179 -9.7937 4.3448 37 1 0.5026 -11.4397 3.6679 38 1 2.9092 -11.0101 4.3466 39 1 2.4254 -9.3642 5.0232 40 1 2.0478 -6.3942 -0.6306 41 1 0.3082 -6.6890 -0.8161 42 1 2.8255 -3.7514 -0.6266 43 1 2.1777 -4.0433 1.0185 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000979490214.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:17 Heat of formation + Delta-G solvation = -20.415455 kcal Electronic energy + Delta-G solvation = -22308.550599 eV Core-core repulsion = 19160.454160 eV Total energy + Delta-G solvation = -3148.096439 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.43818 -40.36576 -37.46685 -36.61213 -34.97171 -33.30381 -32.24563 -30.63735 -27.80225 -26.94622 -25.14139 -23.57350 -23.29117 -22.71078 -21.67587 -21.16960 -19.62205 -18.89120 -18.19239 -17.58858 -16.79172 -16.29535 -16.15893 -15.63095 -15.40907 -15.17534 -15.03835 -14.78829 -14.09090 -14.03736 -13.70689 -13.51515 -13.23303 -13.14493 -12.87884 -12.69169 -12.49839 -12.41526 -12.24555 -12.15883 -11.80990 -11.77050 -11.50328 -11.43161 -11.30944 -11.12682 -10.94533 -10.76810 -10.66335 -9.99479 -8.87942 -7.85314 -5.20387 1.42513 1.46511 1.52635 1.53175 2.16591 2.48393 2.96412 3.31669 3.62940 3.67505 3.74355 3.79264 3.89584 4.01870 4.04226 4.16036 4.20807 4.27752 4.35673 4.51645 4.55006 4.61965 4.72176 4.77261 4.79981 4.90723 4.93987 5.02702 5.07190 5.10537 5.16403 5.23476 5.25733 5.32852 5.41903 5.47269 5.52213 5.58592 5.73752 5.80458 6.19433 6.64292 7.10311 7.34022 7.77840 8.43308 9.24538 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033351 B = 0.003730 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.348475 B = 7504.399755 C = 7747.952183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.067 4.067 3 Si 0.979 3.021 4 H -0.275 1.275 5 H -0.292 1.292 6 H -0.280 1.280 7 C -0.246 4.246 8 H 0.078 0.922 9 N -0.628 5.628 10 C 0.190 3.810 11 C -0.095 4.095 12 H 0.103 0.897 13 C -0.097 4.097 14 C -0.110 4.110 15 C 0.148 3.852 16 H 0.052 0.948 17 N -0.703 5.703 18 C 0.531 3.469 19 O -0.595 6.595 20 C -0.194 4.194 21 C -0.140 4.140 22 C -0.160 4.160 23 C -0.095 4.095 24 C -0.077 4.077 25 H 0.077 0.923 26 C 0.133 3.867 27 H 0.246 0.754 28 H 0.003 0.997 29 H 0.006 0.994 30 H 0.059 0.941 31 H 0.027 0.973 32 H 0.092 0.908 33 H 0.046 0.954 34 H 0.419 0.581 35 H 0.158 0.842 36 H 0.083 0.917 37 H 0.136 0.864 38 H 0.128 0.872 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.103 0.897 42 H 0.039 0.961 43 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.539 -24.976 0.555 24.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.260 4.260 3 Si 0.807 3.193 4 H -0.200 1.200 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.375 4.375 8 H 0.096 0.904 9 N -0.355 5.355 10 C 0.065 3.935 11 C -0.114 4.114 12 H 0.121 0.879 13 C -0.136 4.136 14 C -0.149 4.149 15 C 0.043 3.957 16 H 0.071 0.929 17 N -0.354 5.354 18 C 0.319 3.681 19 O -0.475 6.475 20 C -0.215 4.215 21 C -0.177 4.177 22 C -0.197 4.197 23 C -0.133 4.133 24 C -0.097 4.097 25 H 0.096 0.904 26 C 0.008 3.992 27 H 0.056 0.944 28 H 0.022 0.978 29 H 0.025 0.975 30 H 0.078 0.922 31 H 0.046 0.954 32 H 0.110 0.890 33 H 0.065 0.935 34 H 0.257 0.743 35 H 0.176 0.824 36 H 0.101 0.899 37 H 0.154 0.846 38 H 0.146 0.854 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.121 0.879 42 H 0.057 0.943 43 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -0.402 -24.186 1.149 24.216 hybrid contribution 0.357 1.683 0.013 1.720 sum -0.045 -22.503 1.162 22.533 Atomic orbital electron populations 1.70183 1.06239 1.25255 1.58296 1.25652 0.96664 1.00990 1.02691 0.85153 0.77173 0.78826 0.78197 1.20035 1.21827 1.20645 1.19446 0.90937 0.84078 1.43075 0.90389 1.44887 1.02624 1.01006 1.86968 1.21238 0.83440 0.91633 0.97167 1.22370 0.98181 0.94909 0.95973 0.87910 1.21322 1.00660 0.95785 0.95808 1.21765 0.97376 0.95024 1.00706 1.20826 0.96792 0.81047 0.97047 0.92940 1.45812 1.67195 1.07997 1.14405 1.20427 0.75170 0.90691 0.81821 1.90712 1.52967 1.58124 1.45738 1.22292 1.09842 0.91474 0.97905 1.23038 0.92754 1.02352 0.99558 1.23014 0.98386 1.03348 0.94956 1.21062 1.04129 0.94625 0.93529 1.21276 0.94239 0.94035 1.00165 0.90438 1.21682 0.95685 0.84944 0.96850 0.94442 0.97831 0.97534 0.92183 0.95394 0.88996 0.93545 0.74324 0.82449 0.89887 0.84588 0.85361 0.90393 0.90119 0.87852 0.94273 0.97035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.38 10.32 21.65 0.22 -59.16 16 2 C -0.07 -3.99 5.49 84.87 0.47 -3.53 16 3 Si 0.98 47.69 29.55 68.60 2.03 49.72 16 4 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 5 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 6 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 7 C -0.25 -14.58 10.28 84.03 0.86 -13.71 16 8 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 9 N -0.63 -33.98 3.41 -690.52 -2.35 -36.33 16 10 C 0.19 9.73 4.66 87.06 0.41 10.13 16 11 C -0.10 -3.45 3.61 -9.65 -0.03 -3.49 16 12 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 13 C -0.10 -3.43 4.62 30.46 0.14 -3.29 16 14 C -0.11 -3.02 5.53 30.57 0.17 -2.86 16 15 C 0.15 3.88 2.29 45.04 0.10 3.99 16 16 H 0.05 1.86 6.25 -2.39 -0.01 1.84 16 17 N -0.70 -13.85 5.10 -442.28 -2.25 -16.10 16 18 C 0.53 12.95 7.59 87.66 0.67 13.61 16 19 O -0.59 -21.35 15.93 -3.04 -0.05 -21.40 16 20 C -0.19 -2.90 6.19 -11.54 -0.07 -2.98 16 21 C -0.14 -1.74 10.24 30.62 0.31 -1.43 16 22 C -0.16 -2.45 10.05 30.62 0.31 -2.15 16 23 C -0.10 -2.15 4.85 29.80 0.14 -2.00 16 24 C -0.08 -2.52 2.81 -10.88 -0.03 -2.55 16 25 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 26 C 0.13 5.70 6.19 86.44 0.53 6.24 16 27 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 28 H 0.00 0.20 7.51 -2.38 -0.02 0.18 16 29 H 0.01 0.38 6.99 -2.39 -0.02 0.36 16 30 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.03 1.19 7.15 -2.39 -0.02 1.18 16 32 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.42 4.68 8.61 -92.71 -0.80 3.88 16 35 H 0.16 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.14 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.08 1.69 7.67 -2.39 -0.02 1.67 16 40 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.01 0.53 6.15 -2.38 -0.01 0.52 16 Total: -1.00 -78.60 334.20 1.77 -76.83 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: 0.20 Total: 10.46 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: 3.98 Total: -4.01 kcal Atomic # 7 Polarization: -107.21 SS G_CDS: -4.38 Total: -111.60 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.05 Total: -21.40 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 2.03 Total: 49.72 kcal Total: -78.60 1.77 -76.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979490214.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.411 kcal (2) G-P(sol) polarization free energy of solvation -78.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds