Wall clock time and date at job start Tue Mar 31 2020 00:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 119.99506 * 2 1 4 4 H 1.48500 * 109.47053 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47426 * 300.00208 * 3 2 1 6 6 H 1.48505 * 109.47095 * 60.00089 * 3 2 1 7 7 C 1.38811 * 120.00458 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00231 * 194.59800 * 7 2 1 9 9 N 1.36936 * 119.99949 * 14.60939 * 7 2 1 10 10 C 1.43460 * 118.93738 * 204.95221 * 9 7 2 11 11 C 1.53791 * 107.96507 * 273.62401 * 10 9 7 12 12 C 1.47140 * 111.84177 * 281.67272 * 11 10 9 13 13 N 1.48216 * 110.34315 * 58.29762 * 12 11 10 14 14 C 1.34772 * 119.97126 * 102.46429 * 13 12 11 15 15 O 1.21277 * 120.00421 * 359.97438 * 14 13 12 16 16 C 1.50705 * 119.99795 * 180.02562 * 14 13 12 17 17 H 1.09003 * 115.52351 * 34.50184 * 16 14 13 18 18 C 1.53002 * 117.46082 * 179.97438 * 16 14 13 19 19 H 1.09002 * 119.29613 * 355.36079 * 18 16 14 20 20 C 1.54260 * 118.19980 * 201.21602 * 18 16 14 21 21 C 1.54894 * 104.19655 * 272.21284 * 20 18 16 22 22 C 1.54890 * 102.74709 * 37.94267 * 21 20 18 23 23 C 1.53162 * 117.38805 * 249.14943 * 16 14 13 24 24 H 1.08997 * 119.93787 * 3.46295 * 23 16 14 25 25 C 1.43625 * 120.05428 * 282.73991 * 13 12 11 26 26 C 1.48857 * 118.94092 * 24.97280 * 9 7 2 27 27 H 0.96996 * 120.00774 * 359.97438 * 1 2 3 28 28 H 1.09010 * 109.76264 * 154.00636 * 10 9 7 29 29 H 1.09003 * 109.80827 * 33.27215 * 10 9 7 30 30 H 1.09004 * 109.00976 * 161.06830 * 11 10 9 31 31 H 1.09003 * 108.94558 * 42.24224 * 11 10 9 32 32 H 1.08998 * 109.32719 * 298.02798 * 12 11 10 33 33 H 1.08998 * 109.32598 * 178.56236 * 12 11 10 34 34 H 1.08994 * 110.48712 * 153.53853 * 20 18 16 35 35 H 1.08996 * 110.48596 * 30.88663 * 20 18 16 36 36 H 1.08999 * 110.75793 * 279.63367 * 21 20 18 37 37 H 1.08995 * 110.91909 * 156.33216 * 21 20 18 38 38 H 1.08994 * 110.48898 * 80.73680 * 22 21 20 39 39 H 1.09000 * 110.48762 * 203.24872 * 22 21 20 40 40 H 1.08993 * 108.87282 * 211.19231 * 25 13 12 41 41 H 1.09003 * 108.87161 * 329.63106 * 25 13 12 42 42 H 1.09003 * 109.47871 * 260.60985 * 26 9 7 43 43 H 1.09002 * 109.48315 * 20.63474 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 3.7100 1.3466 0.0006 5 1 1.8912 2.3966 -1.2125 6 1 1.8912 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0642 -1.2170 0.2363 9 7 1.3589 -2.3690 -0.2981 10 6 1.8829 -3.6053 0.2069 11 6 2.9391 -4.1146 -0.7882 12 6 2.3224 -4.7474 -1.9648 13 7 1.4262 -3.7895 -2.6547 14 6 1.8348 -3.1797 -3.7850 15 8 2.9354 -3.4145 -4.2370 16 6 0.9242 -2.2052 -4.4868 17 1 0.2874 -1.6056 -3.8364 18 6 1.4469 -1.5460 -5.7648 19 1 2.4719 -1.7371 -6.0827 20 6 0.7963 -0.2241 -6.2218 21 6 -0.4010 -0.6724 -7.0964 22 6 -0.9255 -1.9205 -6.3438 23 6 0.3501 -2.6281 -5.8423 24 1 0.5596 -3.6229 -6.2353 25 6 0.1252 -3.5061 -2.1165 26 6 0.1302 -2.3138 -1.1365 27 1 -0.4851 0.8399 0.0004 28 1 1.0795 -4.3364 0.2980 29 1 2.3434 -3.4408 1.1811 30 1 3.5772 -4.8426 -0.2872 31 1 3.5502 -3.2739 -1.1168 32 1 1.7457 -5.6159 -1.6465 33 1 3.1043 -5.0694 -2.6525 34 1 1.5000 0.3637 -6.8110 35 1 0.4474 0.3467 -5.3613 36 1 -0.0683 -0.9380 -8.0998 37 1 -1.1653 0.1036 -7.1371 38 1 -1.5524 -1.6236 -5.5031 39 1 -1.4802 -2.5695 -7.0215 40 1 -0.5542 -3.2786 -2.9379 41 1 -0.2403 -4.3900 -1.5937 42 1 -0.7499 -2.3652 -0.4955 43 1 0.1159 -1.3806 -1.6996 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980916937.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:13 Heat of formation + Delta-G solvation = 15.704846 kcal Electronic energy + Delta-G solvation = -23286.621340 eV Core-core repulsion = 20140.091195 eV Total energy + Delta-G solvation = -3146.530145 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.25507 -38.55602 -36.75828 -34.18244 -32.84372 -31.44596 -30.80052 -28.16412 -27.59244 -25.72322 -23.96736 -23.62290 -21.49108 -20.29839 -19.73238 -19.57068 -18.42757 -17.18154 -16.27253 -16.02213 -15.37098 -14.99845 -14.53329 -14.16415 -13.75550 -13.62702 -13.31339 -13.03373 -12.99972 -12.58698 -12.37358 -12.21590 -11.69643 -11.39282 -11.33211 -11.17887 -11.08201 -10.97707 -10.81070 -10.74923 -10.51918 -10.23396 -10.16477 -9.92202 -9.80148 -9.67762 -9.59373 -9.18529 -8.46869 -7.99975 -6.69198 -5.78836 -3.20084 2.91094 3.36902 3.45236 3.48396 3.50771 3.94461 4.50805 4.59566 4.84420 4.87402 5.19491 5.26206 5.31528 5.35261 5.44175 5.51416 5.57210 5.59078 5.69649 5.73732 5.82080 5.84004 5.88838 5.95570 6.04084 6.12415 6.15150 6.18188 6.26120 6.34814 6.35908 6.47125 6.52752 6.56184 6.83478 6.96179 7.07459 7.40417 7.50613 7.81471 8.03336 8.44566 8.73501 9.21521 9.89292 10.34215 11.29163 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013777 B = 0.007736 C = 0.005862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.834566 B = 3618.532345 C = 4775.234669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.003 3.997 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.291 1.291 7 C -0.248 4.248 8 H 0.064 0.936 9 N -0.591 5.591 10 C 0.163 3.837 11 C -0.170 4.170 12 C 0.130 3.870 13 N -0.580 5.580 14 C 0.552 3.448 15 O -0.559 6.559 16 C -0.151 4.151 17 H 0.126 0.874 18 C -0.131 4.131 19 H 0.118 0.882 20 C -0.099 4.099 21 C -0.121 4.121 22 C -0.096 4.096 23 C -0.144 4.144 24 H 0.110 0.890 25 C 0.081 3.919 26 C 0.164 3.836 27 H 0.252 0.748 28 H 0.033 0.967 29 H 0.045 0.955 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.041 0.959 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.058 -6.072 -10.024 12.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.195 4.195 3 Si 0.728 3.272 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.378 4.378 8 H 0.082 0.918 9 N -0.312 5.312 10 C 0.034 3.966 11 C -0.211 4.211 12 C 0.009 3.991 13 N -0.310 5.310 14 C 0.340 3.660 15 O -0.439 6.439 16 C -0.172 4.172 17 H 0.144 0.856 18 C -0.150 4.150 19 H 0.136 0.864 20 C -0.136 4.136 21 C -0.159 4.159 22 C -0.133 4.133 23 C -0.162 4.162 24 H 0.128 0.872 25 C -0.045 4.045 26 C 0.038 3.962 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.059 0.941 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.620 -6.085 -10.237 12.193 hybrid contribution 0.453 0.970 0.257 1.101 sum -2.167 -5.115 -9.980 11.421 Atomic orbital electron populations 1.70014 1.05043 1.25190 1.55201 1.24941 0.95322 0.98124 1.01090 0.86282 0.79485 0.84209 0.77224 1.20372 1.21572 1.21787 1.19221 0.92105 0.84863 1.41610 0.91806 1.43650 1.29032 1.01988 1.56562 1.20282 0.93665 0.88400 0.94247 1.21884 1.00832 1.00714 0.97716 1.20535 0.93597 0.90445 0.94567 1.47268 1.17065 1.42854 1.23814 1.19448 0.86320 0.79832 0.80350 1.90600 1.21857 1.64274 1.67150 1.22455 1.02301 1.01405 0.91039 0.85627 1.23237 0.98857 0.93851 0.99058 0.86414 1.22004 0.96709 0.95485 0.99427 1.22671 0.97296 0.97082 0.98827 1.21986 0.95507 0.96143 0.99679 1.23270 0.95785 0.99398 0.97780 0.87223 1.22087 0.83291 1.00767 0.98327 1.21840 0.88827 0.94769 0.90776 0.93798 0.94853 0.93627 0.92682 0.91345 0.92171 0.90614 0.91151 0.90911 0.91480 0.91331 0.90966 0.91248 0.91423 0.92204 0.94065 0.90523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.41 10.90 55.49 0.60 -24.81 16 2 C 0.00 0.08 4.95 -17.43 -0.09 -0.01 16 3 Si 0.90 21.96 29.58 -169.99 -5.03 16.93 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 7 C -0.25 -6.73 9.27 -15.06 -0.14 -6.87 16 8 H 0.06 1.77 7.87 -52.49 -0.41 1.35 16 9 N -0.59 -14.21 2.54 -172.33 -0.44 -14.65 16 10 C 0.16 3.31 5.63 -5.24 -0.03 3.28 16 11 C -0.17 -3.15 5.64 -29.13 -0.16 -3.31 16 12 C 0.13 2.24 5.70 -5.91 -0.03 2.21 16 13 N -0.58 -10.79 2.47 -177.00 -0.44 -11.23 16 14 C 0.55 10.92 7.45 -10.99 -0.08 10.84 16 15 O -0.56 -12.49 15.76 5.56 0.09 -12.40 16 16 C -0.15 -2.58 4.30 -91.68 -0.39 -2.97 16 17 H 0.13 2.26 6.40 -51.93 -0.33 1.93 16 18 C -0.13 -2.02 6.40 -89.30 -0.57 -2.59 16 19 H 0.12 1.94 7.79 -51.93 -0.40 1.54 16 20 C -0.10 -1.28 6.63 -25.07 -0.17 -1.45 16 21 C -0.12 -1.30 6.91 -24.74 -0.17 -1.47 16 22 C -0.10 -1.08 6.61 -25.08 -0.17 -1.25 16 23 C -0.14 -1.98 6.68 -89.22 -0.60 -2.58 16 24 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16 25 C 0.08 1.43 4.83 -4.87 -0.02 1.40 16 26 C 0.16 3.64 5.10 -2.04 -0.01 3.63 16 27 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 28 H 0.03 0.62 7.58 -51.92 -0.39 0.23 16 29 H 0.05 0.95 8.02 -51.93 -0.42 0.53 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.07 1.51 7.91 -51.93 -0.41 1.10 16 32 H 0.06 0.88 8.06 -51.93 -0.42 0.46 16 33 H 0.08 1.34 7.13 -51.93 -0.37 0.97 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.07 1.07 6.61 -51.93 -0.34 0.73 16 41 H 0.06 0.96 7.73 -51.93 -0.40 0.55 16 42 H 0.04 0.98 8.00 -51.93 -0.42 0.56 16 43 H 0.08 1.91 5.66 -51.93 -0.29 1.61 16 LS Contribution 330.84 15.07 4.99 4.99 Total: -1.00 -30.42 330.84 -9.99 -40.41 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -7.13 Total: 1.90 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -2.63 Total: -1.14 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: -0.27 Total: -50.68 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.09 Total: -12.40 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.42 -9.99 -40.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980916937.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.114 kcal (2) G-P(sol) polarization free energy of solvation -30.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds