Wall clock time and date at job start Tue Mar 31 2020 00:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 119.99506 * 2 1 4 4 H 1.48500 * 109.47053 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47426 * 300.00208 * 3 2 1 6 6 H 1.48505 * 109.47095 * 60.00089 * 3 2 1 7 7 C 1.38811 * 120.00458 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00231 * 194.59800 * 7 2 1 9 9 N 1.36936 * 119.99949 * 14.60939 * 7 2 1 10 10 C 1.43460 * 118.93738 * 204.95221 * 9 7 2 11 11 C 1.53791 * 107.96507 * 273.62401 * 10 9 7 12 12 C 1.47140 * 111.84177 * 281.67272 * 11 10 9 13 13 N 1.48216 * 110.34315 * 58.29762 * 12 11 10 14 14 C 1.34772 * 119.97126 * 102.46429 * 13 12 11 15 15 O 1.21277 * 120.00421 * 359.97438 * 14 13 12 16 16 C 1.50705 * 119.99795 * 180.02562 * 14 13 12 17 17 H 1.09003 * 115.52351 * 34.50184 * 16 14 13 18 18 C 1.53002 * 117.46082 * 179.97438 * 16 14 13 19 19 H 1.09002 * 119.29613 * 355.36079 * 18 16 14 20 20 C 1.54260 * 118.19980 * 201.21602 * 18 16 14 21 21 C 1.54894 * 104.19655 * 272.21284 * 20 18 16 22 22 C 1.54890 * 102.74709 * 37.94267 * 21 20 18 23 23 C 1.53162 * 117.38805 * 249.14943 * 16 14 13 24 24 H 1.08997 * 119.93787 * 3.46295 * 23 16 14 25 25 C 1.43625 * 120.05428 * 282.73991 * 13 12 11 26 26 C 1.48857 * 118.94092 * 24.97280 * 9 7 2 27 27 H 0.96996 * 120.00774 * 359.97438 * 1 2 3 28 28 H 1.09010 * 109.76264 * 154.00636 * 10 9 7 29 29 H 1.09003 * 109.80827 * 33.27215 * 10 9 7 30 30 H 1.09004 * 109.00976 * 161.06830 * 11 10 9 31 31 H 1.09003 * 108.94558 * 42.24224 * 11 10 9 32 32 H 1.08998 * 109.32719 * 298.02798 * 12 11 10 33 33 H 1.08998 * 109.32598 * 178.56236 * 12 11 10 34 34 H 1.08994 * 110.48712 * 153.53853 * 20 18 16 35 35 H 1.08996 * 110.48596 * 30.88663 * 20 18 16 36 36 H 1.08999 * 110.75793 * 279.63367 * 21 20 18 37 37 H 1.08995 * 110.91909 * 156.33216 * 21 20 18 38 38 H 1.08994 * 110.48898 * 80.73680 * 22 21 20 39 39 H 1.09000 * 110.48762 * 203.24872 * 22 21 20 40 40 H 1.08993 * 108.87282 * 211.19231 * 25 13 12 41 41 H 1.09003 * 108.87161 * 329.63106 * 25 13 12 42 42 H 1.09003 * 109.47871 * 260.60985 * 26 9 7 43 43 H 1.09002 * 109.48315 * 20.63474 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 3.7100 1.3466 0.0006 5 1 1.8912 2.3966 -1.2125 6 1 1.8912 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0642 -1.2170 0.2363 9 7 1.3589 -2.3690 -0.2981 10 6 1.8829 -3.6053 0.2069 11 6 2.9391 -4.1146 -0.7882 12 6 2.3224 -4.7474 -1.9648 13 7 1.4262 -3.7895 -2.6547 14 6 1.8348 -3.1797 -3.7850 15 8 2.9354 -3.4145 -4.2370 16 6 0.9242 -2.2052 -4.4868 17 1 0.2874 -1.6056 -3.8364 18 6 1.4469 -1.5460 -5.7648 19 1 2.4719 -1.7371 -6.0827 20 6 0.7963 -0.2241 -6.2218 21 6 -0.4010 -0.6724 -7.0964 22 6 -0.9255 -1.9205 -6.3438 23 6 0.3501 -2.6281 -5.8423 24 1 0.5596 -3.6229 -6.2353 25 6 0.1252 -3.5061 -2.1165 26 6 0.1302 -2.3138 -1.1365 27 1 -0.4851 0.8399 0.0004 28 1 1.0795 -4.3364 0.2980 29 1 2.3434 -3.4408 1.1811 30 1 3.5772 -4.8426 -0.2872 31 1 3.5502 -3.2739 -1.1168 32 1 1.7457 -5.6159 -1.6465 33 1 3.1043 -5.0694 -2.6525 34 1 1.5000 0.3637 -6.8110 35 1 0.4474 0.3467 -5.3613 36 1 -0.0683 -0.9380 -8.0998 37 1 -1.1653 0.1036 -7.1371 38 1 -1.5524 -1.6236 -5.5031 39 1 -1.4802 -2.5695 -7.0215 40 1 -0.5542 -3.2786 -2.9379 41 1 -0.2403 -4.3900 -1.5937 42 1 -0.7499 -2.3652 -0.4955 43 1 0.1159 -1.3806 -1.6996 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980916937.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:12 Heat of formation + Delta-G solvation = -0.563407 kcal Electronic energy + Delta-G solvation = -23287.326784 eV Core-core repulsion = 20140.091195 eV Total energy + Delta-G solvation = -3147.235589 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.63130 -39.86377 -38.39085 -35.94131 -34.42880 -32.89265 -32.38894 -29.31279 -29.16368 -27.37983 -25.56229 -25.28191 -22.82145 -21.55935 -21.31151 -20.69483 -19.87932 -18.89264 -17.94487 -17.55903 -16.94805 -16.25918 -16.20332 -15.66154 -15.36803 -15.16710 -14.90857 -14.48279 -14.08535 -13.99855 -13.89473 -13.77402 -13.30332 -13.14672 -12.87441 -12.52724 -12.43825 -12.38329 -12.25065 -12.09444 -11.99564 -11.74723 -11.73344 -11.69428 -11.44579 -11.09273 -10.88072 -10.61139 -10.47500 -9.55337 -8.65630 -7.86732 -5.29163 1.38332 1.42151 1.45753 1.50537 2.11318 2.48756 2.70141 3.25902 3.38631 3.70286 3.74470 3.77735 3.93958 4.17538 4.19864 4.21368 4.25944 4.33421 4.46702 4.51182 4.51306 4.58321 4.70135 4.72667 4.79678 4.83651 4.91265 4.96263 5.03740 5.15664 5.18627 5.20352 5.22840 5.28496 5.29042 5.47390 5.49642 5.59887 5.71568 5.81519 6.39088 6.52799 7.17420 7.22407 7.95095 8.32515 9.17607 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013777 B = 0.007736 C = 0.005862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.834566 B = 3618.532345 C = 4775.234669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.041 4.041 3 Si 0.948 3.052 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.256 4.256 8 H 0.049 0.951 9 N -0.605 5.605 10 C 0.158 3.842 11 C -0.155 4.155 12 C 0.126 3.874 13 N -0.582 5.582 14 C 0.543 3.457 15 O -0.594 6.594 16 C -0.173 4.173 17 H 0.112 0.888 18 C -0.145 4.145 19 H 0.100 0.900 20 C -0.099 4.099 21 C -0.113 4.113 22 C -0.093 4.093 23 C -0.115 4.115 24 H 0.116 0.884 25 C 0.093 3.907 26 C 0.172 3.828 27 H 0.249 0.751 28 H 0.060 0.940 29 H 0.036 0.964 30 H 0.087 0.913 31 H 0.023 0.977 32 H 0.099 0.901 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.056 0.944 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.024 0.976 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.199 -7.313 -11.242 14.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.236 4.236 3 Si 0.778 3.222 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.387 4.387 8 H 0.067 0.933 9 N -0.328 5.328 10 C 0.031 3.969 11 C -0.196 4.196 12 C 0.005 3.995 13 N -0.311 5.311 14 C 0.332 3.668 15 O -0.476 6.476 16 C -0.194 4.194 17 H 0.130 0.870 18 C -0.163 4.163 19 H 0.118 0.882 20 C -0.137 4.137 21 C -0.150 4.150 22 C -0.130 4.130 23 C -0.133 4.133 24 H 0.134 0.866 25 C -0.032 4.032 26 C 0.047 3.953 27 H 0.059 0.941 28 H 0.078 0.922 29 H 0.055 0.945 30 H 0.106 0.894 31 H 0.042 0.958 32 H 0.117 0.883 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.114 0.886 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.042 0.958 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.765 -7.351 -11.440 14.110 hybrid contribution 0.869 1.324 0.688 1.727 sum -2.896 -6.028 -10.752 12.662 Atomic orbital electron populations 1.70122 1.05726 1.25380 1.56090 1.25478 0.96082 1.00347 1.01712 0.85494 0.78327 0.81377 0.77015 1.20557 1.21633 1.21470 1.19331 0.91746 0.86521 1.41117 0.93274 1.43881 1.29307 1.02294 1.57313 1.20448 0.94718 0.87596 0.94149 1.21693 1.00060 0.99876 0.97968 1.20692 0.94024 0.91170 0.93644 1.47425 1.17504 1.42669 1.23478 1.19965 0.86219 0.79875 0.80703 1.90569 1.23247 1.65581 1.68194 1.22353 1.03106 1.01960 0.91968 0.87016 1.23326 0.98889 0.96120 0.97998 0.88164 1.22045 0.97939 0.94242 0.99440 1.22666 0.96397 0.97129 0.98825 1.22066 0.94256 0.96578 1.00140 1.23419 0.96379 0.99347 0.94186 0.86605 1.21919 0.83404 0.99771 0.98114 1.21633 0.87454 0.95485 0.90755 0.94118 0.92202 0.94533 0.89435 0.95802 0.88252 0.91113 0.90164 0.92563 0.89898 0.89708 0.91197 0.88553 0.89349 0.89278 0.95801 0.93881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.86 10.90 21.65 0.24 -52.62 16 2 C -0.04 -2.27 4.95 84.86 0.42 -1.85 16 3 Si 0.95 46.13 29.58 68.60 2.03 48.16 16 4 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 5 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 7 C -0.26 -14.26 9.27 84.03 0.78 -13.48 16 8 H 0.05 2.82 7.87 -2.91 -0.02 2.80 16 9 N -0.61 -29.36 2.54 -699.13 -1.78 -31.13 16 10 C 0.16 6.28 5.63 87.21 0.49 6.77 16 11 C -0.16 -5.57 5.64 29.04 0.16 -5.40 16 12 C 0.13 4.09 5.70 84.23 0.48 4.57 16 13 N -0.58 -21.03 2.47 -832.31 -2.05 -23.08 16 14 C 0.54 21.54 7.45 87.66 0.65 22.19 16 15 O -0.59 -27.00 15.76 -3.02 -0.05 -27.04 16 16 C -0.17 -5.91 4.30 -11.48 -0.05 -5.96 16 17 H 0.11 4.12 6.40 -2.39 -0.02 4.11 16 18 C -0.14 -4.44 6.40 -9.94 -0.06 -4.50 16 19 H 0.10 3.41 7.79 -2.39 -0.02 3.39 16 20 C -0.10 -2.49 6.63 31.67 0.21 -2.29 16 21 C -0.11 -2.10 6.91 31.89 0.22 -1.88 16 22 C -0.09 -1.83 6.61 31.66 0.21 -1.62 16 23 C -0.11 -2.98 6.68 -9.89 -0.07 -3.05 16 24 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 25 C 0.09 3.13 4.83 87.36 0.42 3.56 16 26 C 0.17 7.70 5.10 86.38 0.44 8.14 16 27 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 28 H 0.06 2.07 7.58 -2.38 -0.02 2.05 16 29 H 0.04 1.50 8.02 -2.39 -0.02 1.48 16 30 H 0.09 2.56 8.14 -2.38 -0.02 2.54 16 31 H 0.02 1.05 7.91 -2.39 -0.02 1.03 16 32 H 0.10 2.50 8.06 -2.39 -0.02 2.48 16 33 H 0.07 2.41 7.13 -2.39 -0.02 2.39 16 34 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.10 1.43 8.14 -2.39 -0.02 1.42 16 40 H 0.09 2.64 6.61 -2.39 -0.02 2.62 16 41 H 0.09 2.53 7.73 -2.39 -0.02 2.51 16 42 H 0.02 1.14 8.00 -2.39 -0.02 1.12 16 43 H 0.04 2.20 5.66 -2.39 -0.01 2.19 16 Total: -1.00 -67.96 330.84 3.68 -64.28 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.98 Total: 16.25 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 4.31 Total: 5.19 kcal Atomic # 7 Polarization: -103.25 SS G_CDS: -3.59 Total: -106.84 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -0.05 Total: -27.04 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -67.96 3.68 -64.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980916937.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.721 kcal (2) G-P(sol) polarization free energy of solvation -67.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds