Wall clock time and date at job start Tue Mar 31 2020 00:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 120.00160 * 2 1 4 4 H 1.48495 * 109.47003 * 240.00285 * 3 2 1 5 5 H 1.48508 * 109.46880 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47042 * 119.99860 * 3 2 1 7 7 C 1.38806 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00075 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00080 * 0.02562 * 7 2 1 10 10 C 1.46510 * 119.99911 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.46680 * 34.99920 * 10 9 7 12 12 C 1.52997 * 109.47071 * 274.99622 * 10 9 7 13 13 C 1.52999 * 109.46991 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.46626 * 60.00378 * 13 12 10 15 15 C 1.52997 * 109.47127 * 299.99539 * 14 13 12 16 16 H 1.08996 * 109.46952 * 300.00302 * 15 14 13 17 17 N 1.46496 * 109.46953 * 179.97438 * 15 14 13 18 18 C 1.34783 * 119.99808 * 85.00516 * 17 15 14 19 19 O 1.21279 * 119.99733 * 359.97438 * 18 17 15 20 20 C 1.50696 * 119.99817 * 179.97438 * 18 17 15 21 21 C 1.54631 * 111.04117 * 295.32947 * 20 18 17 22 22 C 1.51163 * 104.69393 * 217.36245 * 21 20 18 23 23 C 1.30522 * 111.12390 * 16.38473 * 22 21 20 24 24 C 1.51103 * 111.10342 * 0.02897 * 23 22 21 25 25 C 1.52996 * 109.46858 * 154.99804 * 10 9 7 26 26 H 0.97010 * 119.99788 * 0.02562 * 1 2 3 27 27 H 0.96994 * 120.00321 * 359.97438 * 9 7 2 28 28 H 1.09002 * 109.47153 * 60.00215 * 12 10 9 29 29 H 1.08993 * 109.47194 * 300.00503 * 12 10 9 30 30 H 1.08993 * 109.47839 * 300.00447 * 13 12 10 31 31 H 1.09000 * 109.47160 * 180.02562 * 13 12 10 32 32 H 1.09001 * 109.46801 * 59.99811 * 14 13 12 33 33 H 1.09001 * 109.46998 * 179.97438 * 14 13 12 34 34 H 0.97000 * 120.00283 * 265.00021 * 17 15 14 35 35 H 1.08999 * 110.91300 * 59.30301 * 20 18 17 36 36 H 1.08997 * 110.38422 * 336.15002 * 21 20 18 37 37 H 1.08999 * 110.38610 * 98.52216 * 21 20 18 38 38 H 1.08008 * 124.42998 * 196.42679 * 22 21 20 39 39 H 1.07997 * 124.44878 * 180.02562 * 23 22 21 40 40 H 1.08992 * 110.38883 * 224.75465 * 24 23 22 41 41 H 1.08999 * 110.38748 * 102.37423 * 24 23 22 42 42 H 1.08996 * 109.47452 * 59.99781 * 25 10 9 43 43 H 1.09000 * 109.47054 * 299.99941 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9687 -3.5505 0.5900 12 6 2.4218 -4.0357 -1.4365 13 6 3.1874 -5.3603 -1.4364 14 6 2.3105 -6.4559 -0.8265 15 6 1.9468 -6.0771 0.6105 16 1 2.8575 -5.9705 1.1997 17 7 1.1068 -7.1258 1.1942 18 6 1.6763 -8.2080 1.7608 19 8 2.8842 -8.3138 1.7870 20 6 0.8123 -9.2865 2.3618 21 6 0.0174 -8.7496 3.5746 22 6 0.0014 -9.8956 4.5603 23 6 0.9055 -10.7875 4.2593 24 6 1.6760 -10.3856 3.0232 25 6 1.1808 -4.7521 0.6102 26 1 -0.4850 0.8401 -0.0004 27 1 0.3555 -2.3880 0.0005 28 1 3.0468 -3.2553 -1.8708 29 1 1.5111 -4.1418 -2.0258 30 1 4.0980 -5.2538 -0.8471 31 1 3.4469 -5.6300 -2.4601 32 1 1.3998 -6.5625 -1.4159 33 1 2.8557 -7.3998 -0.8268 34 1 0.1407 -7.0414 1.1730 35 1 0.1440 -9.7119 1.6131 36 1 0.5213 -7.8847 4.0060 37 1 -0.9985 -8.4892 3.2776 38 1 -0.6706 -9.9670 5.4028 39 1 1.0800 -11.6939 4.8201 40 1 1.7871 -11.2367 2.3515 41 1 2.6528 -9.9871 3.2974 42 1 0.2701 -4.8583 0.0209 43 1 0.9216 -4.4822 1.6340 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980979825.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:24 Heat of formation + Delta-G solvation = -29.913882 kcal Electronic energy + Delta-G solvation = -21679.644558 eV Core-core repulsion = 18531.136237 eV Total energy + Delta-G solvation = -3148.508321 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.41828 -38.56713 -37.31582 -34.67128 -33.33638 -31.13978 -30.37063 -28.83567 -28.33888 -27.66576 -23.80595 -23.03941 -21.87378 -20.81017 -20.13817 -19.24746 -19.02764 -17.50748 -16.90255 -16.49753 -16.01763 -15.21789 -14.50363 -14.36795 -14.21753 -13.78057 -13.52773 -13.24396 -13.05363 -12.73177 -12.57797 -12.41611 -12.16126 -12.10379 -11.86620 -11.51099 -11.38055 -10.99420 -10.92938 -10.86272 -10.71998 -10.34338 -10.28266 -10.17095 -10.03258 -9.68405 -9.53694 -9.15783 -8.96197 -8.85562 -6.96404 -5.76947 -3.05547 1.99143 2.60934 3.15619 3.44370 3.48816 3.49626 4.22041 4.35038 4.58099 4.68189 4.91631 4.98027 5.02927 5.11295 5.32519 5.33735 5.39780 5.50696 5.51998 5.60269 5.62598 5.69456 5.70694 5.77925 5.88059 5.93323 5.98337 6.03661 6.14710 6.24295 6.31345 6.34817 6.52496 6.55226 6.60081 6.64526 6.73439 6.97054 7.12707 7.53039 7.70342 8.22837 8.41897 9.52980 10.10240 10.45132 11.45745 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026996 B = 0.003374 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.937425 B = 8297.904590 C = 8937.059088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.183 3.817 11 H 0.048 0.952 12 C -0.136 4.136 13 C -0.115 4.115 14 C -0.123 4.123 15 C 0.148 3.852 16 H 0.087 0.913 17 N -0.722 5.722 18 C 0.522 3.478 19 O -0.541 6.541 20 C -0.118 4.118 21 C -0.091 4.091 22 C -0.170 4.170 23 C -0.163 4.163 24 C -0.087 4.087 25 C -0.129 4.129 26 H 0.255 0.745 27 H 0.383 0.617 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.399 0.601 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.073 0.927 41 H 0.094 0.906 42 H 0.064 0.936 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.969 -20.985 4.266 21.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.365 5.365 10 C 0.073 3.927 11 H 0.066 0.934 12 C -0.177 4.177 13 C -0.153 4.153 14 C -0.162 4.162 15 C 0.043 3.957 16 H 0.105 0.895 17 N -0.372 5.372 18 C 0.308 3.692 19 O -0.418 6.418 20 C -0.139 4.139 21 C -0.128 4.128 22 C -0.187 4.187 23 C -0.181 4.181 24 C -0.125 4.125 25 C -0.168 4.168 26 H 0.065 0.935 27 H 0.217 0.783 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.233 0.767 35 H 0.123 0.877 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.092 0.908 41 H 0.113 0.887 42 H 0.083 0.917 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.020 -20.873 4.294 21.310 hybrid contribution -0.449 0.967 -0.070 1.068 sum -0.429 -19.906 4.224 20.354 Atomic orbital electron populations 1.69652 1.05102 1.25736 1.57798 1.24730 0.95510 0.97660 1.03061 0.86279 0.78534 0.83582 0.77875 1.21282 1.21723 1.21258 1.19205 0.90998 0.84090 1.42600 0.91205 1.42395 1.05729 0.99704 1.88639 1.20099 0.94109 0.85542 0.92972 0.93395 1.22286 0.99698 0.95236 1.00472 1.21487 0.98531 0.95396 0.99930 1.21875 1.00062 0.98790 0.95466 1.21043 0.94502 0.86168 0.93955 0.89524 1.46172 1.10493 1.21217 1.59280 1.20346 0.88729 0.82626 0.77543 1.90687 1.14747 1.78139 1.58180 1.22195 0.97916 0.95488 0.98305 1.21345 1.00351 0.97954 0.93163 1.23230 0.99746 0.95797 0.99973 1.23321 0.97074 0.99317 0.98414 1.21280 0.99495 0.96946 0.94729 1.22093 0.99319 0.93387 1.01971 0.93500 0.78344 0.91913 0.92674 0.92200 0.92534 0.92103 0.92249 0.76690 0.87737 0.90041 0.90266 0.85598 0.85649 0.90820 0.88749 0.91726 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.99 13.06 55.49 0.72 -27.27 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.46 16 9 N -0.72 -17.82 5.12 -53.42 -0.27 -18.09 16 10 C 0.18 3.56 2.77 -67.93 -0.19 3.37 16 11 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 12 C -0.14 -2.41 5.50 -26.73 -0.15 -2.55 16 13 C -0.11 -1.66 5.92 -26.73 -0.16 -1.82 16 14 C -0.12 -1.67 5.49 -26.73 -0.15 -1.82 16 15 C 0.15 2.06 2.46 -67.91 -0.17 1.90 16 16 H 0.09 1.39 7.58 -51.93 -0.39 0.99 16 17 N -0.72 -8.35 5.07 -53.79 -0.27 -8.63 16 18 C 0.52 6.51 7.03 -10.98 -0.08 6.43 16 19 O -0.54 -8.83 15.20 5.56 0.08 -8.74 16 20 C -0.12 -1.09 3.54 -90.05 -0.32 -1.41 16 21 C -0.09 -0.76 6.37 -26.80 -0.17 -0.93 16 22 C -0.17 -1.36 10.78 -35.67 -0.38 -1.74 16 23 C -0.16 -1.34 10.78 -35.69 -0.38 -1.73 16 24 C -0.09 -0.83 6.16 -26.82 -0.17 -1.00 16 25 C -0.13 -2.02 4.86 -26.71 -0.13 -2.15 16 26 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.38 9.96 7.80 -40.82 -0.32 9.64 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.40 3.65 8.60 -40.82 -0.35 3.30 16 35 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.78 7.88 -51.93 -0.41 0.37 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 39 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.09 1.10 7.01 -51.93 -0.36 0.73 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 345.16 15.07 5.20 5.20 Total: -1.00 -31.47 345.16 -9.54 -41.01 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -7.30 Total: 9.82 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -2.68 Total: -10.64 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: 0.18 Total: -53.98 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.08 Total: -8.74 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.47 -9.54 -41.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980979825.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.097 kcal (2) G-P(sol) polarization free energy of solvation -31.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds