Wall clock time and date at job start Tue Mar 31 2020 00:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 120.00160 * 2 1 4 4 H 1.48495 * 109.47003 * 240.00285 * 3 2 1 5 5 H 1.48508 * 109.46880 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47042 * 119.99860 * 3 2 1 7 7 C 1.38806 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00075 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00080 * 0.02562 * 7 2 1 10 10 C 1.46510 * 119.99911 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.46680 * 34.99920 * 10 9 7 12 12 C 1.52997 * 109.47071 * 274.99622 * 10 9 7 13 13 C 1.52999 * 109.46991 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.46626 * 60.00378 * 13 12 10 15 15 C 1.52997 * 109.47127 * 299.99539 * 14 13 12 16 16 H 1.08996 * 109.46952 * 300.00302 * 15 14 13 17 17 N 1.46496 * 109.46953 * 179.97438 * 15 14 13 18 18 C 1.34783 * 119.99808 * 85.00516 * 17 15 14 19 19 O 1.21279 * 119.99733 * 359.97438 * 18 17 15 20 20 C 1.50696 * 119.99817 * 179.97438 * 18 17 15 21 21 C 1.54631 * 111.04117 * 295.32947 * 20 18 17 22 22 C 1.51163 * 104.69393 * 217.36245 * 21 20 18 23 23 C 1.30522 * 111.12390 * 16.38473 * 22 21 20 24 24 C 1.51103 * 111.10342 * 0.02897 * 23 22 21 25 25 C 1.52996 * 109.46858 * 154.99804 * 10 9 7 26 26 H 0.97010 * 119.99788 * 0.02562 * 1 2 3 27 27 H 0.96994 * 120.00321 * 359.97438 * 9 7 2 28 28 H 1.09002 * 109.47153 * 60.00215 * 12 10 9 29 29 H 1.08993 * 109.47194 * 300.00503 * 12 10 9 30 30 H 1.08993 * 109.47839 * 300.00447 * 13 12 10 31 31 H 1.09000 * 109.47160 * 180.02562 * 13 12 10 32 32 H 1.09001 * 109.46801 * 59.99811 * 14 13 12 33 33 H 1.09001 * 109.46998 * 179.97438 * 14 13 12 34 34 H 0.97000 * 120.00283 * 265.00021 * 17 15 14 35 35 H 1.08999 * 110.91300 * 59.30301 * 20 18 17 36 36 H 1.08997 * 110.38422 * 336.15002 * 21 20 18 37 37 H 1.08999 * 110.38610 * 98.52216 * 21 20 18 38 38 H 1.08008 * 124.42998 * 196.42679 * 22 21 20 39 39 H 1.07997 * 124.44878 * 180.02562 * 23 22 21 40 40 H 1.08992 * 110.38883 * 224.75465 * 24 23 22 41 41 H 1.08999 * 110.38748 * 102.37423 * 24 23 22 42 42 H 1.08996 * 109.47452 * 59.99781 * 25 10 9 43 43 H 1.09000 * 109.47054 * 299.99941 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9687 -3.5505 0.5900 12 6 2.4218 -4.0357 -1.4365 13 6 3.1874 -5.3603 -1.4364 14 6 2.3105 -6.4559 -0.8265 15 6 1.9468 -6.0771 0.6105 16 1 2.8575 -5.9705 1.1997 17 7 1.1068 -7.1258 1.1942 18 6 1.6763 -8.2080 1.7608 19 8 2.8842 -8.3138 1.7870 20 6 0.8123 -9.2865 2.3618 21 6 0.0174 -8.7496 3.5746 22 6 0.0014 -9.8956 4.5603 23 6 0.9055 -10.7875 4.2593 24 6 1.6760 -10.3856 3.0232 25 6 1.1808 -4.7521 0.6102 26 1 -0.4850 0.8401 -0.0004 27 1 0.3555 -2.3880 0.0005 28 1 3.0468 -3.2553 -1.8708 29 1 1.5111 -4.1418 -2.0258 30 1 4.0980 -5.2538 -0.8471 31 1 3.4469 -5.6300 -2.4601 32 1 1.3998 -6.5625 -1.4159 33 1 2.8557 -7.3998 -0.8268 34 1 0.1407 -7.0414 1.1730 35 1 0.1440 -9.7119 1.6131 36 1 0.5213 -7.8847 4.0060 37 1 -0.9985 -8.4892 3.2776 38 1 -0.6706 -9.9670 5.4028 39 1 1.0800 -11.6939 4.8201 40 1 1.7871 -11.2367 2.3515 41 1 2.6528 -9.9871 3.2974 42 1 0.2701 -4.8583 0.0209 43 1 0.9216 -4.4822 1.6340 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980979825.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:23 Heat of formation + Delta-G solvation = -49.430842 kcal Electronic energy + Delta-G solvation = -21680.490877 eV Core-core repulsion = 18531.136237 eV Total energy + Delta-G solvation = -3149.354640 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.40336 -39.70828 -38.32288 -36.22517 -34.82337 -32.94947 -31.36409 -30.03136 -29.25200 -28.92876 -25.71790 -24.11255 -23.16042 -22.07239 -21.23844 -20.51101 -19.65921 -19.16707 -18.19655 -17.45955 -16.99782 -16.50606 -16.16313 -15.57275 -15.49119 -15.17294 -14.97886 -14.93792 -14.25388 -13.79715 -13.64771 -13.46392 -13.34255 -13.02374 -12.90951 -12.80235 -12.63386 -12.29713 -12.19175 -12.17857 -12.05773 -12.03624 -11.97087 -11.64450 -11.46889 -11.36892 -10.87314 -10.73427 -10.04414 -9.78863 -9.00005 -7.93906 -5.21748 1.37838 1.47272 1.49545 1.55539 1.62861 2.16080 2.56908 3.39174 3.48782 3.62024 3.66074 3.86759 3.91320 4.05109 4.22515 4.29588 4.31184 4.38473 4.46220 4.52884 4.57272 4.61163 4.67707 4.76026 4.79476 4.83527 4.94732 5.01806 5.07748 5.14447 5.15988 5.21071 5.21826 5.35049 5.49400 5.49986 5.54007 5.63223 5.66020 6.00149 6.28847 6.58762 7.26823 7.35177 8.10780 8.34873 9.29229 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026996 B = 0.003374 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.937425 B = 8297.904590 C = 8937.059088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.968 3.032 4 H -0.279 1.279 5 H -0.295 1.295 6 H -0.280 1.280 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.736 5.736 10 C 0.177 3.823 11 H 0.034 0.966 12 C -0.126 4.126 13 C -0.107 4.107 14 C -0.115 4.115 15 C 0.157 3.843 16 H 0.065 0.935 17 N -0.711 5.711 18 C 0.520 3.480 19 O -0.583 6.583 20 C -0.112 4.112 21 C -0.091 4.091 22 C -0.170 4.170 23 C -0.170 4.170 24 C -0.091 4.091 25 C -0.114 4.114 26 H 0.251 0.749 27 H 0.374 0.626 28 H 0.040 0.960 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.414 0.586 35 H 0.131 0.869 36 H 0.065 0.935 37 H 0.101 0.899 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.082 0.918 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.560 -22.485 4.198 22.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.266 4.266 3 Si 0.798 3.202 4 H -0.206 1.206 5 H -0.221 1.221 6 H -0.206 1.206 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.375 5.375 10 C 0.068 3.932 11 H 0.052 0.948 12 C -0.166 4.166 13 C -0.146 4.146 14 C -0.154 4.154 15 C 0.052 3.948 16 H 0.083 0.917 17 N -0.362 5.362 18 C 0.308 3.692 19 O -0.463 6.463 20 C -0.133 4.133 21 C -0.129 4.129 22 C -0.188 4.188 23 C -0.188 4.188 24 C -0.129 4.129 25 C -0.153 4.153 26 H 0.060 0.940 27 H 0.206 0.794 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.251 0.749 35 H 0.149 0.851 36 H 0.084 0.916 37 H 0.119 0.881 38 H 0.162 0.838 39 H 0.159 0.841 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.566 -22.411 4.225 22.813 hybrid contribution -0.221 1.380 -0.033 1.398 sum -0.787 -21.031 4.192 21.460 Atomic orbital electron populations 1.69795 1.06423 1.26038 1.59617 1.25487 0.96365 1.00822 1.03915 0.85286 0.77279 0.79571 0.78095 1.20558 1.22082 1.20601 1.19546 0.91291 0.85366 1.40943 0.91088 1.42562 1.05446 1.00763 1.88749 1.20309 0.93821 0.84822 0.94271 0.94810 1.22090 0.99651 0.96349 0.98534 1.21417 0.98059 0.93824 1.01263 1.21800 1.00461 0.98207 0.94904 1.20744 0.93707 0.86008 0.94339 0.91728 1.46005 1.11075 1.20359 1.58726 1.20921 0.88500 0.83012 0.76759 1.90674 1.16794 1.79067 1.59758 1.22228 0.97688 0.94242 0.99106 1.21382 1.01126 0.97582 0.92777 1.23429 0.99894 0.95210 1.00218 1.23431 0.96959 1.00277 0.98098 1.21285 0.98520 0.97263 0.95807 1.21874 0.99117 0.92973 1.01296 0.94038 0.79392 0.94096 0.92691 0.92547 0.90572 0.90624 0.92109 0.74911 0.85145 0.91607 0.88069 0.83829 0.84071 0.89988 0.91456 0.90502 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.73 13.06 21.65 0.28 -58.45 16 2 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 3 Si 0.97 46.26 29.55 68.60 2.03 48.29 16 4 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 5 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 6 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 7 C -0.24 -13.31 9.93 84.03 0.83 -12.48 16 8 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 9 N -0.74 -36.60 5.12 -322.93 -1.65 -38.25 16 10 C 0.18 6.87 2.77 44.99 0.12 6.99 16 11 H 0.03 1.41 8.08 -2.39 -0.02 1.39 16 12 C -0.13 -4.38 5.50 30.59 0.17 -4.21 16 13 C -0.11 -2.95 5.92 30.60 0.18 -2.76 16 14 C -0.12 -2.90 5.49 30.60 0.17 -2.73 16 15 C 0.16 4.24 2.46 45.01 0.11 4.35 16 16 H 0.06 2.07 7.58 -2.39 -0.02 2.05 16 17 N -0.71 -15.29 5.07 -442.47 -2.24 -17.53 16 18 C 0.52 12.41 7.03 87.65 0.62 13.03 16 19 O -0.58 -19.04 15.20 -3.03 -0.05 -19.09 16 20 C -0.11 -1.85 3.54 -10.43 -0.04 -1.89 16 21 C -0.09 -1.33 6.37 30.55 0.19 -1.13 16 22 C -0.17 -2.31 10.78 26.29 0.28 -2.03 16 23 C -0.17 -2.46 10.78 26.27 0.28 -2.18 16 24 C -0.09 -1.64 6.16 30.53 0.19 -1.45 16 25 C -0.11 -3.49 4.86 30.61 0.15 -3.34 16 26 H 0.25 14.81 8.31 -92.70 -0.77 14.04 16 27 H 0.37 19.71 7.80 -92.71 -0.72 18.99 16 28 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.05 1.90 8.14 -2.39 -0.02 1.89 16 30 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.41 6.53 8.60 -92.71 -0.80 5.73 16 35 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.07 1.18 7.88 -2.39 -0.02 1.16 16 37 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.14 1.44 8.06 -2.91 -0.02 1.41 16 39 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 40 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.07 1.59 7.01 -2.39 -0.02 1.57 16 42 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -68.37 345.16 1.57 -66.80 By element: Atomic # 1 Polarization: 32.35 SS G_CDS: -0.53 Total: 31.83 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: 3.73 Total: -13.59 kcal Atomic # 7 Polarization: -110.61 SS G_CDS: -3.61 Total: -114.22 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.05 Total: -19.09 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -68.37 1.57 -66.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980979825.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.365 kcal (2) G-P(sol) polarization free energy of solvation -68.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds