Wall clock time and date at job start Tue Mar 31 2020 00:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 120.00145 * 2 1 4 4 H 1.48500 * 109.47345 * 270.00377 * 3 2 1 5 5 H 1.48497 * 109.46893 * 30.00789 * 3 2 1 6 6 H 1.48501 * 109.46900 * 150.00454 * 3 2 1 7 7 C 1.38813 * 119.99705 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99967 * 359.97438 * 7 2 1 9 9 N 1.36934 * 119.99675 * 179.97438 * 7 2 1 10 10 C 1.46503 * 119.99974 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.47048 * 325.00138 * 10 9 7 12 12 C 1.52997 * 109.47302 * 84.99824 * 10 9 7 13 13 C 1.52999 * 109.47114 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47087 * 300.00120 * 13 12 10 15 15 C 1.52997 * 109.47241 * 59.99958 * 14 13 12 16 16 H 1.09004 * 109.46812 * 60.00212 * 15 14 13 17 17 N 1.46498 * 109.47036 * 180.02562 * 15 14 13 18 18 C 1.34777 * 119.99828 * 274.72131 * 17 15 14 19 19 O 1.21283 * 120.00222 * 0.28168 * 18 17 15 20 20 C 1.50703 * 120.00290 * 180.27728 * 18 17 15 21 21 C 1.54635 * 111.03340 * 292.02869 * 20 18 17 22 22 C 1.51106 * 104.72240 * 217.32934 * 21 20 18 23 23 C 1.30531 * 111.10415 * 16.43930 * 22 21 20 24 24 C 1.51103 * 111.10370 * 359.97438 * 23 22 21 25 25 C 1.52999 * 109.47114 * 300.00025 * 15 14 13 26 26 H 0.96996 * 119.99704 * 359.97438 * 1 2 3 27 27 H 0.96995 * 120.00421 * 359.97438 * 9 7 2 28 28 H 1.09003 * 109.47189 * 300.00425 * 12 10 9 29 29 H 1.08995 * 109.47096 * 60.00202 * 12 10 9 30 30 H 1.08995 * 109.47266 * 59.99948 * 13 12 10 31 31 H 1.09000 * 109.47204 * 180.02562 * 13 12 10 32 32 H 1.09009 * 109.46941 * 299.99855 * 14 13 12 33 33 H 1.08997 * 109.47066 * 180.02562 * 14 13 12 34 34 H 0.97001 * 120.00384 * 95.00578 * 17 15 14 35 35 H 1.09003 * 110.90824 * 56.03334 * 20 18 17 36 36 H 1.08992 * 110.38771 * 336.13825 * 21 20 18 37 37 H 1.08999 * 110.38991 * 98.52505 * 21 20 18 38 38 H 1.07998 * 124.44997 * 196.46090 * 22 21 20 39 39 H 1.07997 * 124.44741 * 180.02562 * 23 22 21 40 40 H 1.08998 * 110.39054 * 224.75163 * 24 23 22 41 41 H 1.09001 * 110.48045 * 102.42630 * 24 23 22 42 42 H 1.08997 * 109.46923 * 179.97438 * 25 15 14 43 43 H 1.08995 * 109.47266 * 300.00052 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4709 -0.0022 11 1 3.5649 -3.2069 0.5870 12 6 4.2576 -2.9746 -1.4396 13 6 5.0221 -4.2999 -1.4406 14 6 6.4095 -4.0889 -0.8312 15 6 6.2640 -3.5852 0.6062 16 1 5.7165 -4.3210 1.1952 17 7 7.5925 -3.3826 1.1895 18 6 8.2426 -4.4161 1.7601 19 8 7.7301 -5.5150 1.7862 20 6 9.6066 -4.2064 2.3657 21 6 10.6574 -3.8989 1.2738 22 6 11.9107 -4.6042 1.7373 23 6 11.6388 -5.4901 2.6566 24 6 10.1588 -5.5227 2.9599 25 6 5.4995 -2.2599 0.6073 26 1 -0.4849 0.8400 0.0004 27 1 3.8646 -0.3622 -0.0014 28 1 3.2692 -3.1253 -1.8736 29 1 4.8048 -2.2387 -2.0287 30 1 4.4746 -5.0356 -0.8516 31 1 5.1262 -4.6585 -2.4647 32 1 6.9571 -3.3531 -1.4203 33 1 6.9543 -5.0329 -0.8324 34 1 8.0024 -2.5038 1.1687 35 1 9.5811 -3.4182 3.1182 36 1 10.3325 -4.2951 0.3118 37 1 10.8298 -2.8248 1.2044 38 1 12.9015 -4.4018 1.3581 39 1 12.3750 -6.1167 3.1380 40 1 9.9924 -5.5531 4.0366 41 1 9.6900 -6.3816 2.4796 42 1 5.3955 -1.9014 1.6313 43 1 6.0470 -1.5242 0.0182 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980979826.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:27 Heat of formation + Delta-G solvation = -25.614340 kcal Electronic energy + Delta-G solvation = -21737.561748 eV Core-core repulsion = 18589.239869 eV Total energy + Delta-G solvation = -3148.321879 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.48701 -38.66712 -37.40111 -34.80901 -33.40350 -31.35871 -30.44124 -29.04381 -28.44905 -28.02324 -23.64649 -23.03640 -21.92259 -20.79787 -20.16949 -19.45894 -19.08204 -17.74290 -17.20540 -16.60457 -16.01644 -15.13882 -14.80124 -14.53185 -14.13224 -13.76854 -13.67713 -13.34712 -13.11323 -12.81696 -12.59262 -12.47867 -12.28250 -12.24102 -11.97677 -11.56629 -11.43348 -11.27260 -11.04027 -10.98886 -10.86833 -10.41040 -10.33960 -10.19909 -10.03139 -9.66729 -9.58724 -9.21274 -9.04125 -8.90088 -7.28378 -5.77624 -3.13378 1.92988 2.54859 3.08273 3.35404 3.37999 3.43827 4.16776 4.29345 4.57698 4.60552 4.81711 4.88721 4.96076 5.00258 5.24775 5.26287 5.32426 5.43940 5.45279 5.50261 5.53770 5.58836 5.61902 5.68674 5.77328 5.80653 5.88338 5.92993 6.05523 6.18376 6.19822 6.24920 6.37005 6.45705 6.53948 6.55056 6.63545 6.87837 7.01896 7.45600 7.99064 8.16530 8.41513 9.19772 9.92154 10.11857 11.40795 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029776 B = 0.003449 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.126877 B = 8117.389625 C = 8515.118888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.885 3.115 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.242 4.242 8 H 0.091 0.909 9 N -0.748 5.748 10 C 0.188 3.812 11 H 0.057 0.943 12 C -0.137 4.137 13 C -0.115 4.115 14 C -0.124 4.124 15 C 0.148 3.852 16 H 0.089 0.911 17 N -0.723 5.723 18 C 0.522 3.478 19 O -0.538 6.538 20 C -0.118 4.118 21 C -0.088 4.088 22 C -0.172 4.172 23 C -0.160 4.160 24 C -0.089 4.089 25 C -0.133 4.133 26 H 0.259 0.741 27 H 0.360 0.640 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.399 0.601 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.074 0.926 41 H 0.096 0.904 42 H 0.069 0.931 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.175 -7.781 2.576 25.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.372 4.372 8 H 0.109 0.891 9 N -0.390 5.390 10 C 0.078 3.922 11 H 0.075 0.925 12 C -0.177 4.177 13 C -0.154 4.154 14 C -0.162 4.162 15 C 0.044 3.956 16 H 0.107 0.893 17 N -0.373 5.373 18 C 0.308 3.692 19 O -0.415 6.415 20 C -0.140 4.140 21 C -0.126 4.126 22 C -0.190 4.190 23 C -0.178 4.178 24 C -0.126 4.126 25 C -0.172 4.172 26 H 0.069 0.931 27 H 0.193 0.807 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.232 0.768 35 H 0.123 0.877 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.093 0.907 41 H 0.114 0.886 42 H 0.087 0.913 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 23.510 -8.623 2.616 25.178 hybrid contribution 0.818 1.779 -0.070 1.959 sum 24.328 -6.844 2.546 25.400 Atomic orbital electron populations 1.69702 1.05103 1.25796 1.57598 1.24679 0.95228 0.97188 1.02124 0.86542 0.79154 0.85053 0.77708 1.21145 1.21791 1.20401 1.19082 0.80529 0.94731 1.42845 0.89143 1.42763 1.04016 1.01915 1.90347 1.20073 0.89427 0.89279 0.93421 0.92489 1.22249 1.00233 0.95251 0.99962 1.21483 0.95023 0.98717 1.00135 1.21882 0.98103 1.00893 0.95340 1.21016 0.82147 0.98338 0.94143 0.89288 1.46159 1.19580 1.12189 1.59339 1.20341 0.86732 0.84498 0.77654 1.90694 1.68109 1.24466 1.58246 1.22195 0.92239 1.00574 0.98947 1.21302 0.92207 1.00931 0.98124 1.23207 0.98327 0.98748 0.98726 1.23333 0.96913 0.98866 0.98722 1.21294 0.92572 0.97346 1.01393 1.22128 0.97465 0.95626 1.01962 0.93069 0.80745 0.91384 0.92780 0.91970 0.92352 0.92140 0.92134 0.76759 0.87739 0.90212 0.90383 0.85617 0.85611 0.90734 0.88626 0.91259 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.25 13.97 55.49 0.78 -28.47 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 3 Si 0.88 21.85 27.73 -169.99 -4.71 17.14 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 7 C -0.24 -6.73 10.41 -15.06 -0.16 -6.89 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 9 N -0.75 -17.23 4.93 -53.42 -0.26 -17.50 16 10 C 0.19 3.48 2.77 -67.93 -0.19 3.29 16 11 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 12 C -0.14 -2.30 5.50 -26.73 -0.15 -2.45 16 13 C -0.11 -1.60 5.92 -26.73 -0.16 -1.76 16 14 C -0.12 -1.59 5.50 -26.73 -0.15 -1.73 16 15 C 0.15 1.96 2.46 -67.93 -0.17 1.79 16 16 H 0.09 1.36 7.57 -51.93 -0.39 0.97 16 17 N -0.72 -7.86 5.08 -53.81 -0.27 -8.13 16 18 C 0.52 6.23 7.03 -10.98 -0.08 6.15 16 19 O -0.54 -8.53 15.17 5.55 0.08 -8.45 16 20 C -0.12 -1.04 3.54 -90.06 -0.32 -1.36 16 21 C -0.09 -0.66 6.37 -26.82 -0.17 -0.83 16 22 C -0.17 -1.25 10.78 -35.70 -0.38 -1.64 16 23 C -0.16 -1.23 10.78 -35.70 -0.38 -1.62 16 24 C -0.09 -0.81 6.18 -26.84 -0.17 -0.98 16 25 C -0.13 -1.95 4.86 -26.73 -0.13 -2.08 16 26 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 27 H 0.36 8.11 5.66 -40.82 -0.23 7.88 16 28 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.73 8.14 -51.92 -0.42 0.30 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.40 3.32 8.60 -40.82 -0.35 2.97 16 35 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.67 7.88 -51.93 -0.41 0.26 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 39 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.10 1.07 6.95 -51.93 -0.36 0.71 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 342.00 15.07 5.15 5.15 Total: -1.00 -32.47 342.00 -9.18 -41.65 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -7.25 Total: 8.71 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -2.69 Total: -10.10 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: 0.24 Total: -54.10 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.08 Total: -8.45 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.14 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.47 -9.18 -41.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980979826.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.040 kcal (2) G-P(sol) polarization free energy of solvation -32.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds