Wall clock time and date at job start Tue Mar 31 2020 00:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 120.00145 * 2 1 4 4 H 1.48500 * 109.47345 * 270.00377 * 3 2 1 5 5 H 1.48497 * 109.46893 * 30.00789 * 3 2 1 6 6 H 1.48501 * 109.46900 * 150.00454 * 3 2 1 7 7 C 1.38813 * 119.99705 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99967 * 359.97438 * 7 2 1 9 9 N 1.36934 * 119.99675 * 179.97438 * 7 2 1 10 10 C 1.46503 * 119.99974 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.47048 * 325.00138 * 10 9 7 12 12 C 1.52997 * 109.47302 * 84.99824 * 10 9 7 13 13 C 1.52999 * 109.47114 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47087 * 300.00120 * 13 12 10 15 15 C 1.52997 * 109.47241 * 59.99958 * 14 13 12 16 16 H 1.09004 * 109.46812 * 60.00212 * 15 14 13 17 17 N 1.46498 * 109.47036 * 180.02562 * 15 14 13 18 18 C 1.34777 * 119.99828 * 274.72131 * 17 15 14 19 19 O 1.21283 * 120.00222 * 0.28168 * 18 17 15 20 20 C 1.50703 * 120.00290 * 180.27728 * 18 17 15 21 21 C 1.54635 * 111.03340 * 292.02869 * 20 18 17 22 22 C 1.51106 * 104.72240 * 217.32934 * 21 20 18 23 23 C 1.30531 * 111.10415 * 16.43930 * 22 21 20 24 24 C 1.51103 * 111.10370 * 359.97438 * 23 22 21 25 25 C 1.52999 * 109.47114 * 300.00025 * 15 14 13 26 26 H 0.96996 * 119.99704 * 359.97438 * 1 2 3 27 27 H 0.96995 * 120.00421 * 359.97438 * 9 7 2 28 28 H 1.09003 * 109.47189 * 300.00425 * 12 10 9 29 29 H 1.08995 * 109.47096 * 60.00202 * 12 10 9 30 30 H 1.08995 * 109.47266 * 59.99948 * 13 12 10 31 31 H 1.09000 * 109.47204 * 180.02562 * 13 12 10 32 32 H 1.09009 * 109.46941 * 299.99855 * 14 13 12 33 33 H 1.08997 * 109.47066 * 180.02562 * 14 13 12 34 34 H 0.97001 * 120.00384 * 95.00578 * 17 15 14 35 35 H 1.09003 * 110.90824 * 56.03334 * 20 18 17 36 36 H 1.08992 * 110.38771 * 336.13825 * 21 20 18 37 37 H 1.08999 * 110.38991 * 98.52505 * 21 20 18 38 38 H 1.07998 * 124.44997 * 196.46090 * 22 21 20 39 39 H 1.07997 * 124.44741 * 180.02562 * 23 22 21 40 40 H 1.08998 * 110.39054 * 224.75163 * 24 23 22 41 41 H 1.09001 * 110.48045 * 102.42630 * 24 23 22 42 42 H 1.08997 * 109.46923 * 179.97438 * 25 15 14 43 43 H 1.08995 * 109.47266 * 300.00052 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4709 -0.0022 11 1 3.5649 -3.2069 0.5870 12 6 4.2576 -2.9746 -1.4396 13 6 5.0221 -4.2999 -1.4406 14 6 6.4095 -4.0889 -0.8312 15 6 6.2640 -3.5852 0.6062 16 1 5.7165 -4.3210 1.1952 17 7 7.5925 -3.3826 1.1895 18 6 8.2426 -4.4161 1.7601 19 8 7.7301 -5.5150 1.7862 20 6 9.6066 -4.2064 2.3657 21 6 10.6574 -3.8989 1.2738 22 6 11.9107 -4.6042 1.7373 23 6 11.6388 -5.4901 2.6566 24 6 10.1588 -5.5227 2.9599 25 6 5.4995 -2.2599 0.6073 26 1 -0.4849 0.8400 0.0004 27 1 3.8646 -0.3622 -0.0014 28 1 3.2692 -3.1253 -1.8736 29 1 4.8048 -2.2387 -2.0287 30 1 4.4746 -5.0356 -0.8516 31 1 5.1262 -4.6585 -2.4647 32 1 6.9571 -3.3531 -1.4203 33 1 6.9543 -5.0329 -0.8324 34 1 8.0024 -2.5038 1.1687 35 1 9.5811 -3.4182 3.1182 36 1 10.3325 -4.2951 0.3118 37 1 10.8298 -2.8248 1.2044 38 1 12.9015 -4.4018 1.3581 39 1 12.3750 -6.1167 3.1380 40 1 9.9924 -5.5531 4.0366 41 1 9.6900 -6.3816 2.4796 42 1 5.3955 -1.9014 1.6313 43 1 6.0470 -1.5242 0.0182 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980979826.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:26 Heat of formation + Delta-G solvation = -46.814819 kcal Electronic energy + Delta-G solvation = -21738.481070 eV Core-core repulsion = 18589.239869 eV Total energy + Delta-G solvation = -3149.241201 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.41329 -39.75812 -38.34234 -36.32838 -34.83505 -33.27778 -31.38168 -30.30620 -29.36987 -28.98053 -25.43982 -24.10275 -23.16636 -22.06164 -21.24662 -20.69692 -19.65212 -19.55715 -18.23479 -17.49569 -16.97324 -16.46983 -16.14220 -15.82504 -15.39926 -15.24145 -15.00427 -14.77878 -14.50328 -13.88421 -13.75451 -13.58470 -13.33795 -13.03517 -13.01923 -12.88545 -12.65500 -12.39413 -12.20815 -12.15255 -12.04359 -11.99497 -11.81460 -11.69966 -11.47826 -11.44825 -10.91629 -10.74740 -10.05313 -9.78152 -9.30960 -8.01032 -5.35027 1.38179 1.38510 1.43467 1.50705 1.62882 2.14943 2.50233 3.30132 3.45091 3.49205 3.65348 3.83288 3.89667 4.01561 4.14280 4.26953 4.27906 4.37602 4.40292 4.50880 4.55158 4.62045 4.64263 4.74356 4.79485 4.84793 4.95050 4.97167 5.07276 5.13684 5.14350 5.18999 5.20752 5.34249 5.47674 5.49661 5.61546 5.64377 5.78820 6.00601 6.22929 6.58992 7.09381 7.27671 7.84461 8.05448 9.20813 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029776 B = 0.003449 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.126877 B = 8117.389625 C = 8515.118888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.987 5.987 2 C -0.069 4.069 3 Si 0.960 3.040 4 H -0.278 1.278 5 H -0.299 1.299 6 H -0.246 1.246 7 C -0.229 4.229 8 H 0.051 0.949 9 N -0.749 5.749 10 C 0.180 3.820 11 H 0.032 0.968 12 C -0.128 4.128 13 C -0.108 4.108 14 C -0.114 4.114 15 C 0.156 3.844 16 H 0.063 0.937 17 N -0.710 5.710 18 C 0.520 3.480 19 O -0.583 6.583 20 C -0.113 4.113 21 C -0.087 4.087 22 C -0.168 4.168 23 C -0.172 4.172 24 C -0.094 4.094 25 C -0.118 4.118 26 H 0.257 0.743 27 H 0.367 0.633 28 H 0.036 0.964 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.416 0.584 35 H 0.126 0.874 36 H 0.071 0.929 37 H 0.103 0.897 38 H 0.146 0.854 39 H 0.139 0.861 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.116 -6.192 2.336 28.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.638 5.638 2 C -0.260 4.260 3 Si 0.787 3.213 4 H -0.204 1.204 5 H -0.226 1.226 6 H -0.170 1.170 7 C -0.360 4.360 8 H 0.069 0.931 9 N -0.392 5.392 10 C 0.071 3.929 11 H 0.051 0.949 12 C -0.168 4.168 13 C -0.147 4.147 14 C -0.153 4.153 15 C 0.050 3.950 16 H 0.081 0.919 17 N -0.360 5.360 18 C 0.308 3.692 19 O -0.463 6.463 20 C -0.134 4.134 21 C -0.124 4.124 22 C -0.185 4.185 23 C -0.190 4.190 24 C -0.131 4.131 25 C -0.157 4.157 26 H 0.066 0.934 27 H 0.201 0.799 28 H 0.055 0.945 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.253 0.747 35 H 0.144 0.856 36 H 0.089 0.911 37 H 0.121 0.879 38 H 0.163 0.837 39 H 0.157 0.843 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 27.528 -7.042 2.374 28.513 hybrid contribution -0.459 1.144 0.010 1.233 sum 27.069 -5.898 2.384 27.806 Atomic orbital electron populations 1.69905 1.07339 1.26685 1.59882 1.25570 0.96148 1.01518 1.02719 0.85339 0.78757 0.79142 0.78101 1.20415 1.22585 1.16999 1.18999 0.82747 0.93240 1.41043 0.93099 1.42714 1.02306 1.03857 1.90366 1.20276 0.91077 0.86969 0.94558 0.94937 1.22077 0.99235 0.97125 0.98326 1.21416 0.95309 0.96691 1.01282 1.21797 0.97165 1.01359 0.94965 1.20726 0.83061 0.96823 0.94349 0.91918 1.45960 1.18432 1.12986 1.58669 1.20916 0.87606 0.83778 0.76930 1.90685 1.69369 1.26343 1.59935 1.22225 0.90430 1.00985 0.99788 1.21344 0.91595 1.02496 0.96967 1.23439 0.99086 0.98033 0.97991 1.23411 0.96091 0.99804 0.99679 1.21292 0.93761 0.96671 1.01391 1.21925 0.95060 0.96873 1.01838 0.93413 0.79918 0.94495 0.91591 0.93009 0.90559 0.90083 0.92385 0.74737 0.85569 0.91050 0.87904 0.83660 0.84281 0.90475 0.91336 0.91410 0.89424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.80 13.97 21.65 0.30 -63.49 16 2 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 3 Si 0.96 44.71 27.73 68.60 1.90 46.61 16 4 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 6 H -0.25 -10.03 6.52 99.48 0.65 -9.38 16 7 C -0.23 -13.06 10.41 84.03 0.87 -12.19 16 8 H 0.05 3.23 8.06 -2.91 -0.02 3.21 16 9 N -0.75 -33.98 4.93 -322.93 -1.59 -35.57 16 10 C 0.18 6.58 2.77 44.99 0.12 6.71 16 11 H 0.03 1.34 8.08 -2.39 -0.02 1.32 16 12 C -0.13 -4.22 5.50 30.59 0.17 -4.05 16 13 C -0.11 -2.89 5.92 30.59 0.18 -2.71 16 14 C -0.11 -2.68 5.50 30.59 0.17 -2.51 16 15 C 0.16 3.86 2.46 44.99 0.11 3.97 16 16 H 0.06 1.92 7.57 -2.39 -0.02 1.91 16 17 N -0.71 -13.60 5.08 -442.53 -2.25 -15.85 16 18 C 0.52 11.64 7.03 87.66 0.62 12.25 16 19 O -0.58 -18.54 15.17 -3.04 -0.05 -18.58 16 20 C -0.11 -1.73 3.54 -10.43 -0.04 -1.77 16 21 C -0.09 -1.01 6.37 30.53 0.19 -0.82 16 22 C -0.17 -1.92 10.78 26.26 0.28 -1.64 16 23 C -0.17 -2.29 10.78 26.26 0.28 -2.01 16 24 C -0.09 -1.62 6.18 30.53 0.19 -1.43 16 25 C -0.12 -3.19 4.86 30.59 0.15 -3.04 16 26 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 27 H 0.37 15.56 5.66 -92.71 -0.52 15.04 16 28 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.08 1.61 8.14 -2.38 -0.02 1.60 16 33 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.42 5.26 8.60 -92.71 -0.80 4.46 16 35 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.07 0.99 7.88 -2.39 -0.02 0.97 16 37 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 39 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 40 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.07 1.56 6.95 -2.39 -0.02 1.55 16 42 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -73.44 342.00 1.71 -71.73 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: -0.39 Total: 27.95 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: 3.77 Total: -12.80 kcal Atomic # 7 Polarization: -111.38 SS G_CDS: -3.53 Total: -114.91 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.05 Total: -18.58 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.90 Total: 46.61 kcal Total: -73.44 1.71 -71.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980979826.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.916 kcal (2) G-P(sol) polarization free energy of solvation -73.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds