Wall clock time and date at job start Tue Mar 31 2020 00:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 119.99614 * 2 1 4 4 H 1.48506 * 109.46676 * 270.00089 * 3 2 1 5 5 H 1.48494 * 109.47060 * 29.99854 * 3 2 1 6 6 H 1.48499 * 109.47020 * 150.00292 * 3 2 1 7 7 C 1.38805 * 120.00359 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00235 * 359.97438 * 7 2 1 9 9 N 1.36941 * 120.00191 * 179.97438 * 7 2 1 10 10 C 1.46496 * 120.00205 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47054 * 324.99505 * 10 9 7 12 12 C 1.52997 * 109.47294 * 84.99773 * 10 9 7 13 13 C 1.53002 * 109.46817 * 60.00190 * 12 10 9 14 14 C 1.53000 * 109.47233 * 60.00194 * 13 12 10 15 15 C 1.52997 * 109.47060 * 299.99657 * 14 13 12 16 16 H 1.09002 * 109.47153 * 300.00319 * 15 14 13 17 17 N 1.46500 * 109.47473 * 180.02562 * 15 14 13 18 18 C 1.34780 * 119.99910 * 85.00011 * 17 15 14 19 19 O 1.21281 * 119.99723 * 0.02562 * 18 17 15 20 20 C 1.50693 * 120.00182 * 180.02562 * 18 17 15 21 21 C 1.54639 * 111.03387 * 295.32985 * 20 18 17 22 22 C 1.51163 * 104.69419 * 217.36087 * 21 20 18 23 23 C 1.30529 * 111.12022 * 16.38198 * 22 21 20 24 24 C 1.51101 * 111.10338 * 0.03597 * 23 22 21 25 25 C 1.52999 * 109.47317 * 59.99960 * 15 14 13 26 26 H 0.97001 * 120.00364 * 359.97438 * 1 2 3 27 27 H 0.97010 * 119.99642 * 0.02562 * 9 7 2 28 28 H 1.08993 * 109.47194 * 299.99671 * 12 10 9 29 29 H 1.09002 * 109.46695 * 179.97438 * 12 10 9 30 30 H 1.08992 * 109.47063 * 299.99823 * 13 12 10 31 31 H 1.09004 * 109.46733 * 179.97438 * 13 12 10 32 32 H 1.09002 * 109.47398 * 59.99826 * 14 13 12 33 33 H 1.09001 * 109.47194 * 180.02562 * 14 13 12 34 34 H 0.96994 * 119.99975 * 265.00388 * 17 15 14 35 35 H 1.08997 * 110.91488 * 59.29368 * 20 18 17 36 36 H 1.08998 * 110.38847 * 336.14458 * 21 20 18 37 37 H 1.09001 * 110.38880 * 98.52202 * 21 20 18 38 38 H 1.07999 * 124.43257 * 196.42770 * 22 21 20 39 39 H 1.08001 * 124.44441 * 180.02562 * 23 22 21 40 40 H 1.08994 * 110.38369 * 224.75004 * 24 23 22 41 41 H 1.08990 * 110.48324 * 102.42189 * 24 23 22 42 42 H 1.09000 * 109.47486 * 180.02562 * 25 15 14 43 43 H 1.09002 * 109.46716 * 60.00091 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4975 2.0465 -1.4002 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4704 -2.1374 0.0014 9 7 3.3797 -1.2020 0.0000 10 6 4.1123 -2.4706 0.0000 11 1 3.5652 -3.2061 0.5899 12 6 4.2578 -2.9755 -1.4369 13 6 5.0258 -1.9432 -2.2648 14 6 6.4132 -1.7310 -1.6558 15 6 6.2677 -1.2261 -0.2189 16 1 5.7226 -0.2822 -0.2189 17 7 7.5961 -1.0223 0.3641 18 6 8.2509 0.1379 0.1599 19 8 7.7401 1.0133 -0.5062 20 6 9.6177 0.3474 0.7591 21 6 9.5506 0.3583 2.3040 22 6 10.5533 1.4087 2.7239 23 6 10.8751 2.1794 1.7207 24 6 10.1404 1.7726 0.4646 25 6 5.4997 -2.2583 0.6091 26 1 -0.4851 0.8400 0.0004 27 1 3.8647 -0.3618 -0.0004 28 1 3.2695 -3.1268 -1.8707 29 1 4.8033 -3.9193 -1.4368 30 1 4.4808 -0.9993 -2.2648 31 1 5.1299 -2.3031 -3.2884 32 1 6.9583 -2.6749 -1.6558 33 1 6.9602 -0.9952 -2.2453 34 1 8.0044 -1.7223 0.8971 35 1 10.3184 -0.4078 0.4032 36 1 8.5504 0.6332 2.6387 37 1 9.8311 -0.6164 2.7032 38 1 10.9518 1.5079 3.7228 39 1 11.5746 3.0001 1.7808 40 1 10.8217 1.7588 -0.3861 41 1 9.3085 2.4501 0.2730 42 1 5.3956 -1.8985 1.6327 43 1 6.0448 -3.2023 0.6091 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980979827.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:30 Heat of formation + Delta-G solvation = -21.553281 kcal Electronic energy + Delta-G solvation = -22344.491337 eV Core-core repulsion = 19196.345559 eV Total energy + Delta-G solvation = -3148.145778 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.41473 -38.72337 -37.36759 -34.60165 -33.09539 -31.18222 -30.36215 -29.04286 -28.45353 -28.10264 -23.52718 -22.99365 -21.97735 -21.28821 -20.03106 -19.02223 -18.57711 -17.74565 -17.27385 -16.46370 -15.90965 -15.21197 -14.58408 -14.38164 -14.18369 -13.98204 -13.71888 -13.07593 -12.82182 -12.55835 -12.49931 -12.40821 -12.22605 -12.16830 -11.89470 -11.58189 -11.49782 -11.37001 -11.01130 -10.88085 -10.74134 -10.31464 -10.23574 -10.15651 -9.89542 -9.53169 -9.50922 -9.14326 -8.95941 -8.80855 -7.23170 -5.73991 -3.08968 2.00449 2.65319 3.17680 3.43262 3.48153 3.52100 4.23370 4.36114 4.63432 4.69240 4.91504 4.97894 5.03221 5.11456 5.33555 5.36686 5.38730 5.43236 5.53314 5.56322 5.59999 5.63335 5.71172 5.73969 5.79263 5.96220 5.98814 5.99304 6.07373 6.25029 6.26879 6.33518 6.41594 6.60951 6.61683 6.69470 6.75439 6.90860 6.99344 7.55122 8.02575 8.27594 8.45295 9.24053 9.97115 10.16343 11.44350 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018777 B = 0.004976 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.825032 B = 5625.818577 C = 6407.383053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.007 3.993 3 Si 0.877 3.123 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.242 4.242 8 H 0.091 0.909 9 N -0.746 5.746 10 C 0.185 3.815 11 H 0.060 0.940 12 C -0.135 4.135 13 C -0.111 4.111 14 C -0.122 4.122 15 C 0.143 3.857 16 H 0.089 0.911 17 N -0.724 5.724 18 C 0.519 3.481 19 O -0.535 6.535 20 C -0.116 4.116 21 C -0.090 4.090 22 C -0.171 4.171 23 C -0.161 4.161 24 C -0.089 4.089 25 C -0.131 4.131 26 H 0.259 0.741 27 H 0.361 0.639 28 H 0.067 0.933 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.397 0.603 35 H 0.104 0.896 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.068 0.932 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.264 -3.451 2.895 23.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.189 4.189 3 Si 0.708 3.292 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.372 4.372 8 H 0.109 0.891 9 N -0.390 5.390 10 C 0.075 3.925 11 H 0.078 0.922 12 C -0.176 4.176 13 C -0.149 4.149 14 C -0.161 4.161 15 C 0.039 3.961 16 H 0.107 0.893 17 N -0.374 5.374 18 C 0.304 3.696 19 O -0.411 6.411 20 C -0.138 4.138 21 C -0.128 4.128 22 C -0.189 4.189 23 C -0.179 4.179 24 C -0.126 4.126 25 C -0.170 4.170 26 H 0.069 0.931 27 H 0.195 0.805 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.230 0.770 35 H 0.122 0.878 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.092 0.908 41 H 0.113 0.887 42 H 0.087 0.913 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 22.618 -2.876 2.420 22.929 hybrid contribution 0.801 0.934 0.259 1.257 sum 23.419 -1.942 2.679 23.652 Atomic orbital electron populations 1.69695 1.05068 1.25760 1.57710 1.24621 0.95144 0.97024 1.02069 0.86664 0.79230 0.85262 0.78060 1.20963 1.21740 1.20357 1.19067 0.80629 0.94626 1.42829 0.89137 1.42880 1.03982 1.01955 1.90211 1.20129 0.89385 0.89531 0.93477 0.92196 1.22151 1.00128 0.96722 0.98552 1.21372 0.94497 1.01142 0.97877 1.21869 0.98279 1.00393 0.95510 1.21062 0.81892 1.00427 0.92737 0.89277 1.46161 1.19602 1.17389 1.54216 1.20375 0.86911 0.81956 0.80333 1.90724 1.68275 1.42610 1.39486 1.22184 0.94800 1.00051 0.96737 1.21343 0.99656 0.99123 0.92650 1.23215 0.98703 0.97912 0.99083 1.23326 0.99556 0.99596 0.95431 1.21290 0.99988 0.94697 0.96627 1.22120 0.97346 0.97988 0.99531 0.93109 0.80497 0.91443 0.93466 0.90980 0.92864 0.92399 0.92272 0.76962 0.87772 0.90062 0.90380 0.85605 0.85619 0.90783 0.88666 0.91311 0.91529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.59 13.97 55.49 0.78 -28.82 16 2 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 3 Si 0.88 23.07 27.74 -169.99 -4.71 18.36 16 4 H -0.28 -7.48 7.11 56.52 0.40 -7.08 16 5 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 6 H -0.28 -7.06 6.52 56.52 0.37 -6.69 16 7 C -0.24 -6.76 10.41 -15.06 -0.16 -6.92 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 9 N -0.75 -17.40 4.08 -53.43 -0.22 -17.62 16 10 C 0.18 3.39 3.10 -67.93 -0.21 3.18 16 11 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 12 C -0.14 -2.27 5.61 -26.73 -0.15 -2.42 16 13 C -0.11 -1.83 5.77 -26.73 -0.15 -1.98 16 14 C -0.12 -1.79 5.49 -26.73 -0.15 -1.94 16 15 C 0.14 2.18 2.28 -67.93 -0.15 2.03 16 16 H 0.09 1.74 5.94 -51.93 -0.31 1.43 16 17 N -0.72 -8.85 5.07 -53.81 -0.27 -9.12 16 18 C 0.52 7.13 7.03 -10.99 -0.08 7.05 16 19 O -0.53 -9.86 15.20 5.56 0.08 -9.78 16 20 C -0.12 -1.16 3.54 -90.05 -0.32 -1.48 16 21 C -0.09 -0.80 6.37 -26.79 -0.17 -0.97 16 22 C -0.17 -1.46 10.78 -35.67 -0.38 -1.84 16 23 C -0.16 -1.44 10.78 -35.70 -0.38 -1.83 16 24 C -0.09 -0.93 6.16 -26.83 -0.17 -1.10 16 25 C -0.13 -1.91 5.08 -26.73 -0.14 -2.05 16 26 H 0.26 7.85 8.31 -40.82 -0.34 7.52 16 27 H 0.36 8.61 3.92 -40.82 -0.16 8.45 16 28 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 1.42 7.60 -51.93 -0.39 1.02 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.40 3.49 8.60 -40.82 -0.35 3.14 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.08 0.84 7.88 -51.93 -0.41 0.43 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 39 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.10 1.25 7.00 -51.93 -0.36 0.88 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 337.61 15.07 5.09 5.09 Total: -1.00 -33.33 337.61 -9.04 -42.36 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -7.07 Total: 9.66 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -2.71 Total: -10.14 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: 0.28 Total: -55.55 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.08 Total: -9.78 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -4.71 Total: 18.36 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.33 -9.04 -42.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980979827.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.809 kcal (2) G-P(sol) polarization free energy of solvation -33.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds