Wall clock time and date at job start Tue Mar 31 2020 00:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 119.99614 * 2 1 4 4 H 1.48506 * 109.46676 * 270.00089 * 3 2 1 5 5 H 1.48494 * 109.47060 * 29.99854 * 3 2 1 6 6 H 1.48499 * 109.47020 * 150.00292 * 3 2 1 7 7 C 1.38805 * 120.00359 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00235 * 359.97438 * 7 2 1 9 9 N 1.36941 * 120.00191 * 179.97438 * 7 2 1 10 10 C 1.46496 * 120.00205 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47054 * 324.99505 * 10 9 7 12 12 C 1.52997 * 109.47294 * 84.99773 * 10 9 7 13 13 C 1.53002 * 109.46817 * 60.00190 * 12 10 9 14 14 C 1.53000 * 109.47233 * 60.00194 * 13 12 10 15 15 C 1.52997 * 109.47060 * 299.99657 * 14 13 12 16 16 H 1.09002 * 109.47153 * 300.00319 * 15 14 13 17 17 N 1.46500 * 109.47473 * 180.02562 * 15 14 13 18 18 C 1.34780 * 119.99910 * 85.00011 * 17 15 14 19 19 O 1.21281 * 119.99723 * 0.02562 * 18 17 15 20 20 C 1.50693 * 120.00182 * 180.02562 * 18 17 15 21 21 C 1.54639 * 111.03387 * 295.32985 * 20 18 17 22 22 C 1.51163 * 104.69419 * 217.36087 * 21 20 18 23 23 C 1.30529 * 111.12022 * 16.38198 * 22 21 20 24 24 C 1.51101 * 111.10338 * 0.03597 * 23 22 21 25 25 C 1.52999 * 109.47317 * 59.99960 * 15 14 13 26 26 H 0.97001 * 120.00364 * 359.97438 * 1 2 3 27 27 H 0.97010 * 119.99642 * 0.02562 * 9 7 2 28 28 H 1.08993 * 109.47194 * 299.99671 * 12 10 9 29 29 H 1.09002 * 109.46695 * 179.97438 * 12 10 9 30 30 H 1.08992 * 109.47063 * 299.99823 * 13 12 10 31 31 H 1.09004 * 109.46733 * 179.97438 * 13 12 10 32 32 H 1.09002 * 109.47398 * 59.99826 * 14 13 12 33 33 H 1.09001 * 109.47194 * 180.02562 * 14 13 12 34 34 H 0.96994 * 119.99975 * 265.00388 * 17 15 14 35 35 H 1.08997 * 110.91488 * 59.29368 * 20 18 17 36 36 H 1.08998 * 110.38847 * 336.14458 * 21 20 18 37 37 H 1.09001 * 110.38880 * 98.52202 * 21 20 18 38 38 H 1.07999 * 124.43257 * 196.42770 * 22 21 20 39 39 H 1.08001 * 124.44441 * 180.02562 * 23 22 21 40 40 H 1.08994 * 110.38369 * 224.75004 * 24 23 22 41 41 H 1.08990 * 110.48324 * 102.42189 * 24 23 22 42 42 H 1.09000 * 109.47486 * 180.02562 * 25 15 14 43 43 H 1.09002 * 109.46716 * 60.00091 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4975 2.0465 -1.4002 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4704 -2.1374 0.0014 9 7 3.3797 -1.2020 0.0000 10 6 4.1123 -2.4706 0.0000 11 1 3.5652 -3.2061 0.5899 12 6 4.2578 -2.9755 -1.4369 13 6 5.0258 -1.9432 -2.2648 14 6 6.4132 -1.7310 -1.6558 15 6 6.2677 -1.2261 -0.2189 16 1 5.7226 -0.2822 -0.2189 17 7 7.5961 -1.0223 0.3641 18 6 8.2509 0.1379 0.1599 19 8 7.7401 1.0133 -0.5062 20 6 9.6177 0.3474 0.7591 21 6 9.5506 0.3583 2.3040 22 6 10.5533 1.4087 2.7239 23 6 10.8751 2.1794 1.7207 24 6 10.1404 1.7726 0.4646 25 6 5.4997 -2.2583 0.6091 26 1 -0.4851 0.8400 0.0004 27 1 3.8647 -0.3618 -0.0004 28 1 3.2695 -3.1268 -1.8707 29 1 4.8033 -3.9193 -1.4368 30 1 4.4808 -0.9993 -2.2648 31 1 5.1299 -2.3031 -3.2884 32 1 6.9583 -2.6749 -1.6558 33 1 6.9602 -0.9952 -2.2453 34 1 8.0044 -1.7223 0.8971 35 1 10.3184 -0.4078 0.4032 36 1 8.5504 0.6332 2.6387 37 1 9.8311 -0.6164 2.7032 38 1 10.9518 1.5079 3.7228 39 1 11.5746 3.0001 1.7808 40 1 10.8217 1.7588 -0.3861 41 1 9.3085 2.4501 0.2730 42 1 5.3956 -1.8985 1.6327 43 1 6.0448 -3.2023 0.6091 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980979827.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:29 Heat of formation + Delta-G solvation = -43.757230 kcal Electronic energy + Delta-G solvation = -22345.454173 eV Core-core repulsion = 19196.345559 eV Total energy + Delta-G solvation = -3149.108614 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.46631 -39.90826 -38.38452 -36.11243 -34.75855 -33.06774 -31.38398 -30.48340 -29.47435 -28.99926 -25.41368 -24.15726 -23.36346 -22.45171 -21.07895 -20.00649 -19.77024 -19.66438 -18.29786 -17.38988 -16.97715 -16.55994 -16.31841 -15.80620 -15.55845 -15.33734 -15.05457 -14.72912 -14.14297 -13.88455 -13.74990 -13.63728 -13.35517 -13.05238 -13.03778 -12.99062 -12.65947 -12.51441 -12.24970 -12.21025 -12.19429 -12.06567 -11.86438 -11.62481 -11.52029 -11.24299 -10.91361 -10.73480 -10.04871 -9.81594 -9.28624 -8.04942 -5.34028 1.28880 1.33052 1.35215 1.36341 1.60678 2.15140 2.41955 3.27900 3.45430 3.59615 3.61198 3.79140 3.89727 3.95943 4.11829 4.24518 4.31249 4.36530 4.39703 4.53641 4.58537 4.65453 4.73899 4.76157 4.77893 4.81260 4.91793 4.96885 5.05650 5.08903 5.14847 5.18414 5.27228 5.40260 5.45205 5.56657 5.59949 5.62104 5.80475 5.97788 6.21443 6.58910 7.07800 7.28850 7.87028 8.02251 9.17253 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018777 B = 0.004976 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.825032 B = 5625.818577 C = 6407.383053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.056 4.056 3 Si 0.935 3.065 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.268 1.268 7 C -0.215 4.215 8 H 0.067 0.933 9 N -0.751 5.751 10 C 0.171 3.829 11 H 0.057 0.943 12 C -0.127 4.127 13 C -0.110 4.110 14 C -0.111 4.111 15 C 0.146 3.854 16 H 0.040 0.960 17 N -0.706 5.706 18 C 0.514 3.486 19 O -0.590 6.590 20 C -0.108 4.108 21 C -0.090 4.090 22 C -0.167 4.167 23 C -0.172 4.172 24 C -0.095 4.095 25 C -0.117 4.117 26 H 0.256 0.744 27 H 0.359 0.641 28 H 0.038 0.962 29 H 0.090 0.910 30 H 0.028 0.972 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.045 0.955 34 H 0.419 0.581 35 H 0.137 0.863 36 H 0.062 0.938 37 H 0.109 0.891 38 H 0.147 0.853 39 H 0.141 0.859 40 H 0.081 0.919 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.025 -5.372 3.930 27.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.247 4.247 3 Si 0.765 3.235 4 H -0.215 1.215 5 H -0.219 1.219 6 H -0.194 1.194 7 C -0.346 4.346 8 H 0.085 0.915 9 N -0.395 5.395 10 C 0.063 3.937 11 H 0.075 0.925 12 C -0.167 4.167 13 C -0.148 4.148 14 C -0.150 4.150 15 C 0.041 3.959 16 H 0.058 0.942 17 N -0.358 5.358 18 C 0.301 3.699 19 O -0.470 6.470 20 C -0.129 4.129 21 C -0.127 4.127 22 C -0.185 4.185 23 C -0.190 4.190 24 C -0.132 4.132 25 C -0.156 4.156 26 H 0.065 0.935 27 H 0.192 0.808 28 H 0.056 0.944 29 H 0.108 0.892 30 H 0.047 0.953 31 H 0.089 0.911 32 H 0.113 0.887 33 H 0.064 0.936 34 H 0.256 0.744 35 H 0.154 0.846 36 H 0.081 0.919 37 H 0.128 0.872 38 H 0.165 0.835 39 H 0.158 0.842 40 H 0.100 0.900 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 26.453 -4.863 3.484 27.121 hybrid contribution -0.350 1.421 -0.088 1.466 sum 26.103 -3.442 3.396 26.547 Atomic orbital electron populations 1.69829 1.06593 1.26204 1.60682 1.25218 0.95782 1.00003 1.03741 0.85714 0.78317 0.81809 0.77642 1.21509 1.21893 1.19361 1.19108 0.82746 0.93372 1.39377 0.91492 1.42991 1.02419 1.04075 1.90029 1.20492 0.91137 0.87132 0.94933 0.92463 1.22036 0.99307 0.98572 0.96771 1.21342 0.95209 0.99018 0.99266 1.21776 0.97022 1.01712 0.94464 1.20807 0.83008 0.98374 0.93759 0.94158 1.45921 1.18269 1.17748 1.53814 1.21093 0.88023 0.81338 0.79423 1.90710 1.69821 1.44447 1.42045 1.22220 0.92703 1.00452 0.97538 1.21395 0.98870 1.00978 0.91485 1.23454 0.97954 0.97241 0.99814 1.23413 1.00278 1.00551 0.94762 1.21297 0.99207 0.94644 0.98097 1.21998 0.95049 0.99980 0.98556 0.93490 0.80757 0.94357 0.89161 0.95265 0.91108 0.88663 0.93643 0.74368 0.84575 0.91930 0.87227 0.83531 0.84172 0.90049 0.92172 0.91552 0.86726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.28 13.97 21.65 0.30 -63.98 16 2 C -0.06 -3.40 5.50 84.86 0.47 -2.94 16 3 Si 0.94 49.46 27.74 68.60 1.90 51.36 16 4 H -0.29 -15.31 7.11 99.48 0.71 -14.61 16 5 H -0.29 -15.40 7.11 99.48 0.71 -14.69 16 6 H -0.27 -13.55 6.52 99.48 0.65 -12.90 16 7 C -0.21 -12.30 10.41 84.03 0.87 -11.43 16 8 H 0.07 4.11 8.06 -2.91 -0.02 4.08 16 9 N -0.75 -35.28 4.08 -322.95 -1.32 -36.59 16 10 C 0.17 6.00 3.10 44.99 0.14 6.14 16 11 H 0.06 2.06 8.08 -2.39 -0.02 2.04 16 12 C -0.13 -4.00 5.61 30.59 0.17 -3.83 16 13 C -0.11 -3.49 5.77 30.60 0.18 -3.31 16 14 C -0.11 -2.98 5.49 30.59 0.17 -2.82 16 15 C 0.15 4.17 2.28 44.99 0.10 4.27 16 16 H 0.04 1.58 5.94 -2.39 -0.01 1.57 16 17 N -0.71 -15.24 5.07 -442.54 -2.24 -17.49 16 18 C 0.51 13.42 7.03 87.65 0.62 14.03 16 19 O -0.59 -22.20 15.20 -3.03 -0.05 -22.25 16 20 C -0.11 -1.88 3.54 -10.43 -0.04 -1.92 16 21 C -0.09 -1.30 6.37 30.55 0.19 -1.10 16 22 C -0.17 -2.33 10.78 26.28 0.28 -2.05 16 23 C -0.17 -2.73 10.78 26.26 0.28 -2.45 16 24 C -0.09 -1.91 6.16 30.53 0.19 -1.72 16 25 C -0.12 -3.04 5.08 30.60 0.16 -2.88 16 26 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 27 H 0.36 17.32 3.92 -92.70 -0.36 16.96 16 28 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.03 1.16 7.60 -2.39 -0.02 1.14 16 31 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.42 5.39 8.60 -92.71 -0.80 4.59 16 35 H 0.14 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.06 1.17 7.88 -2.39 -0.02 1.15 16 37 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 39 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 40 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.06 1.64 7.00 -2.39 -0.02 1.62 16 42 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -77.50 337.61 2.16 -75.34 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: -0.22 Total: 25.61 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: 3.78 Total: -12.01 kcal Atomic # 7 Polarization: -114.80 SS G_CDS: -3.26 Total: -118.06 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.05 Total: -22.25 kcal Atomic # 14 Polarization: 49.46 SS G_CDS: 1.90 Total: 51.36 kcal Total: -77.50 2.16 -75.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980979827.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.585 kcal (2) G-P(sol) polarization free energy of solvation -77.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds