Wall clock time and date at job start Mon Mar 30 2020 23:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00194 * 2 1 4 4 H 1.48500 * 109.47517 * 270.00723 * 3 2 1 5 5 H 1.48502 * 109.46736 * 30.00497 * 3 2 1 6 6 H 1.48496 * 109.47375 * 150.00192 * 3 2 1 7 7 C 1.38810 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00204 * 359.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 H 1.08999 * 109.47480 * 35.27547 * 10 9 7 12 12 C 1.53008 * 109.47014 * 275.27473 * 10 9 7 13 13 C 1.52996 * 109.47074 * 299.99808 * 12 10 9 14 14 C 1.52996 * 109.47220 * 300.00109 * 13 12 10 15 15 C 1.53001 * 109.47349 * 60.00418 * 14 13 12 16 16 H 1.08991 * 109.47002 * 59.99317 * 15 14 13 17 17 N 1.46491 * 109.47219 * 180.02562 * 15 14 13 18 18 C 1.34778 * 119.99958 * 274.99376 * 17 15 14 19 19 O 1.21621 * 119.99995 * 0.02562 * 18 17 15 20 20 C 1.47098 * 120.00286 * 179.97438 * 18 17 15 21 21 C 1.32617 * 124.62299 * 179.70285 * 20 18 17 22 22 C 1.51110 * 110.76037 * 179.84880 * 21 20 18 23 23 C 1.54585 * 104.90160 * 343.80068 * 22 21 20 24 24 C 1.51114 * 124.61928 * 0.02562 * 20 18 17 25 25 C 1.52999 * 109.47493 * 155.27860 * 10 9 7 26 26 H 0.96998 * 120.00381 * 359.97438 * 1 2 3 27 27 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 28 28 H 1.08995 * 109.47066 * 60.00517 * 12 10 9 29 29 H 1.09005 * 109.46722 * 180.02562 * 12 10 9 30 30 H 1.08997 * 109.46795 * 179.97438 * 13 12 10 31 31 H 1.08996 * 109.47285 * 60.00384 * 13 12 10 32 32 H 1.09005 * 109.47245 * 299.99694 * 14 13 12 33 33 H 1.09006 * 109.46869 * 180.02562 * 14 13 12 34 34 H 0.97000 * 120.00700 * 94.99462 * 17 15 14 35 35 H 1.07998 * 124.61850 * 359.97438 * 21 20 18 36 36 H 1.08997 * 110.51575 * 224.85349 * 22 21 20 37 37 H 1.08999 * 110.15496 * 102.56589 * 22 21 20 38 38 H 1.09002 * 110.98370 * 266.71341 * 23 22 21 39 39 H 1.08996 * 111.01606 * 142.92572 * 23 22 21 40 40 H 1.08997 * 110.36492 * 315.43521 * 24 20 18 41 41 H 1.09003 * 110.36477 * 77.64733 * 24 20 18 42 42 H 1.08991 * 109.47925 * 180.02562 * 25 10 9 43 43 H 1.09009 * 109.46506 * 300.00089 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1120 -2.4708 0.0046 11 1 3.5670 -3.2078 -0.5852 12 6 4.2527 -2.9721 1.4433 13 6 5.0180 -1.9378 2.2712 14 6 6.4074 -1.7272 1.6663 15 6 6.2668 -1.2259 0.2277 16 1 5.7218 -0.2820 0.2235 17 7 7.5972 -1.0248 -0.3517 18 6 8.2524 0.1353 -0.1484 19 8 7.7393 1.0151 0.5163 20 6 9.5885 0.3370 -0.7297 21 6 10.3108 1.4408 -0.5931 22 6 11.6324 1.3087 -1.3138 23 6 11.7930 -0.2064 -1.5751 24 6 10.3222 -0.6826 -1.5696 25 6 5.5016 -2.2603 -0.6002 26 1 -0.4850 0.8400 0.0004 27 1 3.8646 -0.3621 -0.0007 28 1 3.2629 -3.1222 1.8742 29 1 4.7982 -3.9159 1.4475 30 1 5.1178 -2.2947 3.2962 31 1 4.4730 -0.9938 2.2671 32 1 6.9525 -2.6712 1.6706 33 1 6.9527 -0.9906 2.2565 34 1 8.0066 -1.7266 -0.8815 35 1 9.9980 2.3143 -0.0403 36 1 12.4468 1.6741 -0.6883 37 1 11.6024 1.8551 -2.2565 38 1 12.3607 -0.6824 -0.7755 39 1 12.2585 -0.3888 -2.5436 40 1 10.2456 -1.6717 -1.1182 41 1 9.9225 -0.6971 -2.5836 42 1 6.0464 -3.2043 -0.5965 43 1 5.4013 -1.9031 -1.6252 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981001788.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:52 Heat of formation + Delta-G solvation = -25.644568 kcal Electronic energy + Delta-G solvation = -22181.849808 eV Core-core repulsion = 19033.526618 eV Total energy + Delta-G solvation = -3148.323190 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.21111 -38.67384 -37.50122 -34.58147 -33.06754 -31.16369 -30.15763 -29.21390 -28.71483 -28.00409 -23.49051 -22.88024 -21.96073 -21.51298 -20.69713 -19.26260 -18.24150 -17.70200 -17.26057 -16.09636 -15.80572 -15.12354 -14.69046 -14.49042 -14.13085 -13.98018 -13.66005 -13.13615 -13.05962 -12.69098 -12.48094 -12.29539 -12.20373 -12.11212 -11.92759 -11.61206 -11.53558 -11.50240 -11.00549 -10.85953 -10.72494 -10.30303 -10.21275 -10.10772 -9.95048 -9.56652 -9.50269 -9.20603 -8.92651 -8.76937 -7.21926 -5.72844 -3.07746 1.25691 3.25498 3.30807 3.44226 3.50672 3.53458 4.20983 4.27840 4.64011 4.64883 4.78628 4.97445 5.02317 5.12242 5.31061 5.35315 5.39033 5.43360 5.45959 5.48749 5.57430 5.60746 5.63366 5.73806 5.80273 5.82003 6.00215 6.00776 6.07975 6.10166 6.27545 6.31797 6.36044 6.44129 6.63588 6.71118 6.77403 6.93189 7.01050 7.60272 8.03708 8.31202 8.46449 9.25249 9.98338 10.17670 11.45510 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021679 B = 0.004594 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.262496 B = 6093.268976 C = 6792.308549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.007 3.993 3 Si 0.876 3.124 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.274 1.274 7 C -0.241 4.241 8 H 0.091 0.909 9 N -0.746 5.746 10 C 0.185 3.815 11 H 0.061 0.939 12 C -0.136 4.136 13 C -0.111 4.111 14 C -0.121 4.121 15 C 0.143 3.857 16 H 0.090 0.910 17 N -0.719 5.719 18 C 0.560 3.440 19 O -0.539 6.539 20 C -0.192 4.192 21 C -0.079 4.079 22 C -0.107 4.107 23 C -0.123 4.123 24 C -0.091 4.091 25 C -0.131 4.131 26 H 0.259 0.741 27 H 0.361 0.639 28 H 0.067 0.933 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.397 0.603 35 H 0.137 0.863 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.066 0.934 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.866 -4.149 -2.676 25.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.189 4.189 3 Si 0.706 3.294 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.200 1.200 7 C -0.371 4.371 8 H 0.109 0.891 9 N -0.390 5.390 10 C 0.075 3.925 11 H 0.079 0.921 12 C -0.176 4.176 13 C -0.149 4.149 14 C -0.160 4.160 15 C 0.039 3.961 16 H 0.108 0.892 17 N -0.369 5.369 18 C 0.348 3.652 19 O -0.417 6.417 20 C -0.195 4.195 21 C -0.099 4.099 22 C -0.144 4.144 23 C -0.160 4.160 24 C -0.128 4.128 25 C -0.170 4.170 26 H 0.069 0.931 27 H 0.195 0.805 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.231 0.769 35 H 0.155 0.845 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 24.226 -3.594 -2.222 24.592 hybrid contribution 0.670 0.972 -0.168 1.192 sum 24.896 -2.623 -2.390 25.148 Atomic orbital electron populations 1.69691 1.05076 1.25761 1.57733 1.24622 0.95153 0.97043 1.02076 0.86681 0.79534 0.85252 0.77922 1.21162 1.21700 1.19981 1.19068 0.80625 0.94621 1.42787 0.89140 1.42889 1.03988 1.01969 1.90191 1.20131 0.89350 0.89547 0.93479 0.92138 1.22157 1.00130 0.96719 0.98575 1.21373 0.94499 1.01171 0.97857 1.21864 0.98266 1.00393 0.95490 1.21070 0.81720 1.00510 0.92791 0.89163 1.46064 1.19376 1.17183 1.54288 1.18015 0.84802 0.82183 0.80216 1.90828 1.68201 1.42720 1.39945 1.21904 0.95473 0.98723 1.03386 1.24049 0.94504 0.97099 0.94201 1.21477 0.95351 0.97165 1.00376 1.22425 0.96114 0.95155 1.02325 1.21254 0.94427 0.97789 0.99361 1.22125 0.97357 0.97983 0.99553 0.93119 0.80488 0.91452 0.93472 0.92882 0.90923 0.92421 0.92276 0.76934 0.84477 0.90258 0.89705 0.90836 0.90529 0.90830 0.90170 0.91512 0.91260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.73 13.97 55.49 0.78 -28.96 16 2 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 3 Si 0.88 23.16 27.73 -169.99 -4.71 18.45 16 4 H -0.28 -7.51 7.11 56.52 0.40 -7.11 16 5 H -0.29 -7.77 7.11 56.52 0.40 -7.36 16 6 H -0.27 -7.07 6.52 56.52 0.37 -6.70 16 7 C -0.24 -6.79 10.41 -15.06 -0.16 -6.94 16 8 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 9 N -0.75 -17.58 4.08 -53.42 -0.22 -17.80 16 10 C 0.18 3.44 3.10 -67.93 -0.21 3.23 16 11 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 12 C -0.14 -2.31 5.61 -26.73 -0.15 -2.46 16 13 C -0.11 -1.88 5.77 -26.74 -0.15 -2.03 16 14 C -0.12 -1.86 5.49 -26.73 -0.15 -2.01 16 15 C 0.14 2.28 2.28 -67.93 -0.16 2.12 16 16 H 0.09 1.82 5.94 -51.93 -0.31 1.51 16 17 N -0.72 -9.53 5.07 -54.99 -0.28 -9.81 16 18 C 0.56 8.46 7.76 -12.67 -0.10 8.37 16 19 O -0.54 -10.61 16.43 5.26 0.09 -10.52 16 20 C -0.19 -2.17 6.09 -102.73 -0.63 -2.80 16 21 C -0.08 -0.81 10.43 -36.01 -0.38 -1.18 16 22 C -0.11 -0.74 6.80 -26.85 -0.18 -0.92 16 23 C -0.12 -0.76 7.17 -25.06 -0.18 -0.94 16 24 C -0.09 -0.70 6.02 -26.84 -0.16 -0.87 16 25 C -0.13 -1.97 5.07 -26.73 -0.14 -2.10 16 26 H 0.26 7.88 8.31 -40.82 -0.34 7.55 16 27 H 0.36 8.70 3.92 -40.82 -0.16 8.54 16 28 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.07 1.47 7.60 -51.93 -0.39 1.07 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.40 3.92 7.61 -40.82 -0.31 3.61 16 35 H 0.14 1.49 8.03 -52.49 -0.42 1.07 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.49 7.83 -51.93 -0.41 0.09 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.07 1.06 8.14 -51.92 -0.42 0.63 16 LS Contribution 338.61 15.07 5.10 5.10 Total: -1.00 -33.93 338.61 -9.16 -43.09 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -7.09 Total: 8.87 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -2.83 Total: -8.43 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: 0.28 Total: -56.56 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -4.71 Total: 18.45 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.93 -9.16 -43.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981001788.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.445 kcal (2) G-P(sol) polarization free energy of solvation -33.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds