Wall clock time and date at job start Mon Mar 30 2020 23:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00194 * 2 1 4 4 H 1.48500 * 109.47517 * 270.00723 * 3 2 1 5 5 H 1.48502 * 109.46736 * 30.00497 * 3 2 1 6 6 H 1.48496 * 109.47375 * 150.00192 * 3 2 1 7 7 C 1.38810 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00204 * 359.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 H 1.08999 * 109.47480 * 35.27547 * 10 9 7 12 12 C 1.53008 * 109.47014 * 275.27473 * 10 9 7 13 13 C 1.52996 * 109.47074 * 299.99808 * 12 10 9 14 14 C 1.52996 * 109.47220 * 300.00109 * 13 12 10 15 15 C 1.53001 * 109.47349 * 60.00418 * 14 13 12 16 16 H 1.08991 * 109.47002 * 59.99317 * 15 14 13 17 17 N 1.46491 * 109.47219 * 180.02562 * 15 14 13 18 18 C 1.34778 * 119.99958 * 274.99376 * 17 15 14 19 19 O 1.21621 * 119.99995 * 0.02562 * 18 17 15 20 20 C 1.47098 * 120.00286 * 179.97438 * 18 17 15 21 21 C 1.32617 * 124.62299 * 179.70285 * 20 18 17 22 22 C 1.51110 * 110.76037 * 179.84880 * 21 20 18 23 23 C 1.54585 * 104.90160 * 343.80068 * 22 21 20 24 24 C 1.51114 * 124.61928 * 0.02562 * 20 18 17 25 25 C 1.52999 * 109.47493 * 155.27860 * 10 9 7 26 26 H 0.96998 * 120.00381 * 359.97438 * 1 2 3 27 27 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 28 28 H 1.08995 * 109.47066 * 60.00517 * 12 10 9 29 29 H 1.09005 * 109.46722 * 180.02562 * 12 10 9 30 30 H 1.08997 * 109.46795 * 179.97438 * 13 12 10 31 31 H 1.08996 * 109.47285 * 60.00384 * 13 12 10 32 32 H 1.09005 * 109.47245 * 299.99694 * 14 13 12 33 33 H 1.09006 * 109.46869 * 180.02562 * 14 13 12 34 34 H 0.97000 * 120.00700 * 94.99462 * 17 15 14 35 35 H 1.07998 * 124.61850 * 359.97438 * 21 20 18 36 36 H 1.08997 * 110.51575 * 224.85349 * 22 21 20 37 37 H 1.08999 * 110.15496 * 102.56589 * 22 21 20 38 38 H 1.09002 * 110.98370 * 266.71341 * 23 22 21 39 39 H 1.08996 * 111.01606 * 142.92572 * 23 22 21 40 40 H 1.08997 * 110.36492 * 315.43521 * 24 20 18 41 41 H 1.09003 * 110.36477 * 77.64733 * 24 20 18 42 42 H 1.08991 * 109.47925 * 180.02562 * 25 10 9 43 43 H 1.09009 * 109.46506 * 300.00089 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1120 -2.4708 0.0046 11 1 3.5670 -3.2078 -0.5852 12 6 4.2527 -2.9721 1.4433 13 6 5.0180 -1.9378 2.2712 14 6 6.4074 -1.7272 1.6663 15 6 6.2668 -1.2259 0.2277 16 1 5.7218 -0.2820 0.2235 17 7 7.5972 -1.0248 -0.3517 18 6 8.2524 0.1353 -0.1484 19 8 7.7393 1.0151 0.5163 20 6 9.5885 0.3370 -0.7297 21 6 10.3108 1.4408 -0.5931 22 6 11.6324 1.3087 -1.3138 23 6 11.7930 -0.2064 -1.5751 24 6 10.3222 -0.6826 -1.5696 25 6 5.5016 -2.2603 -0.6002 26 1 -0.4850 0.8400 0.0004 27 1 3.8646 -0.3621 -0.0007 28 1 3.2629 -3.1222 1.8742 29 1 4.7982 -3.9159 1.4475 30 1 5.1178 -2.2947 3.2962 31 1 4.4730 -0.9938 2.2671 32 1 6.9525 -2.6712 1.6706 33 1 6.9527 -0.9906 2.2565 34 1 8.0066 -1.7266 -0.8815 35 1 9.9980 2.3143 -0.0403 36 1 12.4468 1.6741 -0.6883 37 1 11.6024 1.8551 -2.2565 38 1 12.3607 -0.6824 -0.7755 39 1 12.2585 -0.3888 -2.5436 40 1 10.2456 -1.6717 -1.1182 41 1 9.9225 -0.6971 -2.5836 42 1 6.0464 -3.2043 -0.5965 43 1 5.4013 -1.9031 -1.6252 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981001788.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:52 Heat of formation + Delta-G solvation = -48.361608 kcal Electronic energy + Delta-G solvation = -22182.834893 eV Core-core repulsion = 19033.526618 eV Total energy + Delta-G solvation = -3149.308275 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.33894 -39.82282 -38.51325 -36.14062 -34.77123 -33.07311 -31.23601 -30.44846 -29.77502 -28.90064 -25.41881 -24.09771 -23.38127 -22.49568 -21.53161 -20.49763 -19.86515 -19.39246 -18.15047 -17.33684 -16.58259 -16.53670 -16.29492 -15.81698 -15.71181 -15.37405 -15.05877 -14.70266 -14.15960 -13.94154 -13.76004 -13.57001 -13.48348 -13.03309 -13.00727 -12.94341 -12.60727 -12.53123 -12.24191 -12.20119 -12.05438 -11.98699 -11.87443 -11.63429 -11.54964 -11.30774 -10.93318 -10.84816 -10.17312 -9.82500 -9.29001 -8.05027 -5.34150 0.35775 1.28949 1.32954 1.37887 2.16443 2.24817 2.42148 3.27477 3.50990 3.58480 3.64032 3.79759 3.88727 4.07408 4.12043 4.22790 4.29198 4.30964 4.37895 4.50880 4.63239 4.71695 4.74968 4.79995 4.83314 4.90785 4.95779 4.98372 5.06845 5.11493 5.19522 5.25422 5.35236 5.38329 5.39126 5.42937 5.52648 5.55384 5.59750 5.80152 6.21311 6.56856 7.07503 7.23217 7.86608 8.02060 9.17149 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021679 B = 0.004594 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.262496 B = 6093.268976 C = 6792.308549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.056 4.056 3 Si 0.935 3.065 4 H -0.281 1.281 5 H -0.294 1.294 6 H -0.272 1.272 7 C -0.214 4.214 8 H 0.068 0.932 9 N -0.752 5.752 10 C 0.171 3.829 11 H 0.060 0.940 12 C -0.127 4.127 13 C -0.109 4.109 14 C -0.111 4.111 15 C 0.146 3.854 16 H 0.041 0.959 17 N -0.702 5.702 18 C 0.552 3.448 19 O -0.598 6.598 20 C -0.211 4.211 21 C -0.079 4.079 22 C -0.103 4.103 23 C -0.117 4.117 24 C -0.087 4.087 25 C -0.118 4.118 26 H 0.256 0.744 27 H 0.359 0.641 28 H 0.039 0.961 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.028 0.972 32 H 0.095 0.905 33 H 0.042 0.958 34 H 0.417 0.583 35 H 0.119 0.881 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.115 0.885 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.773 -6.022 -3.702 29.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.248 4.248 3 Si 0.764 3.236 4 H -0.207 1.207 5 H -0.221 1.221 6 H -0.198 1.198 7 C -0.346 4.346 8 H 0.086 0.914 9 N -0.396 5.396 10 C 0.064 3.936 11 H 0.078 0.922 12 C -0.167 4.167 13 C -0.148 4.148 14 C -0.150 4.150 15 C 0.040 3.960 16 H 0.060 0.940 17 N -0.353 5.353 18 C 0.342 3.658 19 O -0.480 6.480 20 C -0.214 4.214 21 C -0.098 4.098 22 C -0.140 4.140 23 C -0.154 4.154 24 C -0.124 4.124 25 C -0.156 4.156 26 H 0.065 0.935 27 H 0.192 0.808 28 H 0.058 0.942 29 H 0.109 0.891 30 H 0.090 0.910 31 H 0.047 0.953 32 H 0.113 0.887 33 H 0.061 0.939 34 H 0.255 0.745 35 H 0.137 0.863 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.098 0.902 39 H 0.115 0.885 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.133 0.867 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 28.205 -5.537 -3.274 28.929 hybrid contribution -0.512 1.489 0.184 1.585 sum 27.693 -4.049 -3.091 28.158 Atomic orbital electron populations 1.69826 1.06575 1.26211 1.60679 1.25223 0.95800 1.00029 1.03747 0.85721 0.78203 0.81766 0.77862 1.20741 1.22110 1.19798 1.19108 0.82693 0.93396 1.39366 0.91428 1.43008 1.02466 1.04070 1.90011 1.20493 0.91017 0.87204 0.94935 0.92204 1.22044 0.99354 0.98530 0.96780 1.21336 0.95056 0.99067 0.99310 1.21774 0.97146 1.01623 0.94430 1.20839 0.82683 0.98568 0.93861 0.94033 1.45822 1.18163 1.17419 1.53849 1.18705 0.86015 0.81677 0.79417 1.90797 1.69880 1.44614 1.42728 1.21961 0.93956 1.00675 1.04845 1.24360 0.96089 0.96106 0.93288 1.21548 0.93471 0.98388 1.00583 1.22457 0.95156 0.94031 1.03760 1.21312 0.94839 0.97237 0.98968 1.22009 0.95113 0.99873 0.98616 0.93484 0.80779 0.94217 0.89106 0.91035 0.95298 0.88685 0.93911 0.74490 0.86299 0.88830 0.88486 0.90171 0.88475 0.89455 0.89342 0.86698 0.91386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.50 13.97 21.65 0.30 -64.20 16 2 C -0.06 -3.46 5.50 84.86 0.47 -2.99 16 3 Si 0.93 49.74 27.73 68.60 1.90 51.64 16 4 H -0.28 -14.61 7.11 99.48 0.71 -13.91 16 5 H -0.29 -15.72 7.11 99.48 0.71 -15.01 16 6 H -0.27 -14.22 6.52 99.48 0.65 -13.57 16 7 C -0.21 -12.35 10.41 84.03 0.87 -11.48 16 8 H 0.07 4.16 8.06 -2.91 -0.02 4.14 16 9 N -0.75 -35.73 4.08 -322.93 -1.32 -37.05 16 10 C 0.17 6.11 3.10 44.99 0.14 6.25 16 11 H 0.06 2.17 8.08 -2.39 -0.02 2.15 16 12 C -0.13 -4.09 5.61 30.60 0.17 -3.92 16 13 C -0.11 -3.59 5.77 30.59 0.18 -3.41 16 14 C -0.11 -3.17 5.49 30.59 0.17 -3.00 16 15 C 0.15 4.42 2.28 44.99 0.10 4.52 16 16 H 0.04 1.70 5.94 -2.39 -0.01 1.69 16 17 N -0.70 -17.12 5.07 -446.15 -2.26 -19.38 16 18 C 0.55 16.38 7.76 86.57 0.67 17.05 16 19 O -0.60 -24.36 16.43 -4.10 -0.07 -24.42 16 20 C -0.21 -4.44 6.09 -18.57 -0.11 -4.56 16 21 C -0.08 -1.52 10.43 24.65 0.26 -1.26 16 22 C -0.10 -1.12 6.80 30.52 0.21 -0.91 16 23 C -0.12 -0.97 7.17 31.68 0.23 -0.74 16 24 C -0.09 -1.03 6.02 30.52 0.18 -0.84 16 25 C -0.12 -3.16 5.07 30.60 0.16 -3.01 16 26 H 0.26 16.16 8.31 -92.71 -0.77 15.39 16 27 H 0.36 17.57 3.92 -92.71 -0.36 17.21 16 28 H 0.04 1.48 8.14 -2.39 -0.02 1.47 16 29 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 30 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.03 1.18 7.60 -2.39 -0.02 1.16 16 32 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 33 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.42 6.65 7.61 -92.71 -0.71 5.94 16 35 H 0.12 2.67 8.03 -2.91 -0.02 2.64 16 36 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.09 0.79 7.83 -2.39 -0.02 0.77 16 41 H 0.09 0.91 8.14 -2.39 -0.02 0.90 16 42 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 Total: -1.00 -78.76 338.61 2.12 -76.64 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: -0.13 Total: 25.06 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: 3.69 Total: -8.29 kcal Atomic # 7 Polarization: -117.35 SS G_CDS: -3.28 Total: -120.63 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.07 Total: -24.42 kcal Atomic # 14 Polarization: 49.74 SS G_CDS: 1.90 Total: 51.64 kcal Total: -78.76 2.12 -76.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981001788.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.283 kcal (2) G-P(sol) polarization free energy of solvation -78.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds