Wall clock time and date at job start Mon Mar 30 2020 23:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86809 * 119.99445 * 2 1 4 4 H 1.48506 * 109.46815 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46998 * 299.99565 * 3 2 1 6 6 H 1.48492 * 109.47251 * 59.99898 * 3 2 1 7 7 C 1.38804 * 120.00654 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00662 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99697 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00130 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47129 * 34.99299 * 10 9 7 12 12 C 1.52999 * 109.46944 * 274.99901 * 10 9 7 13 13 C 1.53005 * 109.47159 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47452 * 59.99536 * 13 12 10 15 15 C 1.53002 * 109.46817 * 300.00239 * 14 13 12 16 16 H 1.08992 * 109.47063 * 299.99823 * 15 14 13 17 17 N 1.46499 * 109.46799 * 179.97438 * 15 14 13 18 18 C 1.34778 * 119.99771 * 85.00174 * 17 15 14 19 19 O 1.21612 * 120.00506 * 359.97438 * 18 17 15 20 20 C 1.47103 * 120.00016 * 180.02562 * 18 17 15 21 21 C 1.32613 * 124.62331 * 179.69975 * 20 18 17 22 22 C 1.51112 * 110.75837 * 179.84170 * 21 20 18 23 23 C 1.54574 * 104.90438 * 343.80250 * 22 21 20 24 24 C 1.51117 * 124.61909 * 359.97438 * 20 18 17 25 25 C 1.52997 * 109.47473 * 154.99556 * 10 9 7 26 26 H 0.96993 * 120.00293 * 0.02562 * 1 2 3 27 27 H 0.97000 * 120.00379 * 359.97438 * 9 7 2 28 28 H 1.09000 * 109.47486 * 59.99569 * 12 10 9 29 29 H 1.09002 * 109.46716 * 299.99651 * 12 10 9 30 30 H 1.09002 * 109.46935 * 299.99411 * 13 12 10 31 31 H 1.09001 * 109.46812 * 179.97438 * 13 12 10 32 32 H 1.08993 * 109.47194 * 179.97438 * 14 13 12 33 33 H 1.09002 * 109.46695 * 59.99734 * 14 13 12 34 34 H 0.97006 * 120.00568 * 264.99947 * 17 15 14 35 35 H 1.08001 * 124.62012 * 0.02562 * 21 20 18 36 36 H 1.08997 * 110.51586 * 224.84580 * 22 21 20 37 37 H 1.09006 * 110.24379 * 102.62226 * 22 21 20 38 38 H 1.09000 * 110.98517 * 266.71099 * 23 22 21 39 39 H 1.08999 * 110.98235 * 142.90923 * 23 22 21 40 40 H 1.08996 * 110.36648 * 315.43826 * 24 20 18 41 41 H 1.09000 * 110.36370 * 77.76026 * 24 20 18 42 42 H 1.09002 * 109.47153 * 59.99757 * 25 10 9 43 43 H 1.09001 * 109.46832 * 299.99948 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2126 6 1 1.8913 2.3966 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9690 -3.5504 0.5899 12 6 2.4221 -4.0355 -1.4365 13 6 3.1866 -5.3608 -1.4366 14 6 2.3091 -6.4559 -0.8271 15 6 1.9453 -6.0770 0.6100 16 1 2.8560 -5.9712 1.1994 17 7 1.1046 -7.1254 1.1934 18 6 1.6734 -8.2080 1.7598 19 8 2.8845 -8.3149 1.7862 20 6 0.8292 -9.2609 2.3451 21 6 1.2900 -10.3642 2.9188 22 6 0.1518 -11.2253 3.4151 23 6 -1.0784 -10.2895 3.4282 24 6 -0.6816 -9.2356 2.3694 25 6 1.1812 -4.7521 0.6102 26 1 -0.4850 0.8400 -0.0004 27 1 0.3557 -2.3881 0.0005 28 1 3.0469 -3.2551 -1.8709 29 1 1.5113 -4.1418 -2.0258 30 1 4.0974 -5.2549 -0.8471 31 1 3.4454 -5.6308 -2.4604 32 1 2.8536 -7.4001 -0.8276 33 1 1.3983 -6.5617 -1.4166 34 1 0.1385 -7.0403 1.1720 35 1 2.3363 -10.6119 3.0203 36 1 0.3602 -11.5919 4.4202 37 1 -0.0140 -12.0604 2.7344 38 1 -1.2081 -9.8288 4.4075 39 1 -1.9792 -10.8247 3.1278 40 1 -1.0398 -8.2490 2.6634 41 1 -1.0813 -9.5098 1.3931 42 1 0.2704 -4.8584 0.0209 43 1 0.9221 -4.4822 1.6340 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981001789.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:55 Heat of formation + Delta-G solvation = -34.162305 kcal Electronic energy + Delta-G solvation = -21562.007675 eV Core-core repulsion = 18413.315128 eV Total energy + Delta-G solvation = -3148.692547 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.20567 -38.53608 -37.43348 -34.65696 -33.31379 -31.12614 -30.16245 -29.15397 -28.37891 -27.62889 -23.79105 -22.90591 -21.87490 -21.27786 -20.38351 -19.73010 -18.63977 -17.39836 -16.91956 -16.22144 -15.81072 -15.11009 -14.73205 -14.40515 -14.12033 -13.76674 -13.50155 -13.27652 -13.11060 -12.96750 -12.63336 -12.33542 -12.08526 -12.03076 -11.94074 -11.55648 -11.48222 -10.98851 -10.91565 -10.88278 -10.70660 -10.32830 -10.26088 -10.15739 -10.03592 -9.69506 -9.56594 -9.22174 -8.91910 -8.83801 -6.95460 -5.76517 -3.05013 1.23137 3.23331 3.26890 3.43742 3.49882 3.51717 4.21755 4.28371 4.58720 4.66273 4.78517 4.97816 5.02746 5.11770 5.31521 5.35186 5.37037 5.47184 5.48794 5.52336 5.61881 5.64419 5.70999 5.77267 5.84016 5.89524 5.99390 6.03919 6.08474 6.16213 6.30181 6.32914 6.36724 6.53933 6.57510 6.66337 6.74839 6.98162 7.13824 7.57963 7.72063 8.26297 8.42308 9.53558 10.10890 10.45760 11.46334 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028169 B = 0.003295 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.752388 B = 8495.537682 C = 9050.197074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.071 0.929 9 N -0.725 5.725 10 C 0.183 3.817 11 H 0.048 0.952 12 C -0.136 4.136 13 C -0.114 4.114 14 C -0.123 4.123 15 C 0.148 3.852 16 H 0.087 0.913 17 N -0.717 5.717 18 C 0.563 3.437 19 O -0.545 6.545 20 C -0.191 4.191 21 C -0.079 4.079 22 C -0.107 4.107 23 C -0.123 4.123 24 C -0.093 4.093 25 C -0.129 4.129 26 H 0.254 0.746 27 H 0.383 0.617 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.399 0.601 35 H 0.137 0.863 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.068 -22.127 3.828 22.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.089 0.911 9 N -0.365 5.365 10 C 0.073 3.927 11 H 0.066 0.934 12 C -0.177 4.177 13 C -0.153 4.153 14 C -0.162 4.162 15 C 0.044 3.956 16 H 0.106 0.894 17 N -0.367 5.367 18 C 0.351 3.649 19 O -0.424 6.424 20 C -0.194 4.194 21 C -0.098 4.098 22 C -0.144 4.144 23 C -0.161 4.161 24 C -0.130 4.130 25 C -0.168 4.168 26 H 0.064 0.936 27 H 0.217 0.783 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.233 0.767 35 H 0.155 0.845 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.090 -22.014 3.859 22.376 hybrid contribution -0.351 1.027 -0.134 1.094 sum -1.441 -20.987 3.725 21.364 Atomic orbital electron populations 1.69666 1.05096 1.25494 1.57999 1.24733 0.95515 0.97668 1.03137 0.86136 0.78849 0.84198 0.77152 1.20530 1.21914 1.21906 1.19296 0.91061 0.84056 1.42266 0.91088 1.42414 1.05748 0.99729 1.88604 1.20097 0.94111 0.85516 0.92985 0.93353 1.22287 0.99709 0.95233 1.00452 1.21489 0.98538 0.95374 0.99931 1.21876 1.00081 0.98819 0.95421 1.21029 0.94501 0.86108 0.93994 0.89448 1.46073 1.10494 1.21082 1.59038 1.17983 0.87493 0.81706 0.77705 1.90785 1.14227 1.78518 1.58864 1.21911 0.96069 0.96970 1.04489 1.24029 0.99867 0.93201 0.92753 1.21476 0.92960 0.98167 1.01787 1.22425 0.97685 0.96515 0.99450 1.21264 0.91361 1.00371 1.00000 1.22081 0.99345 0.93379 1.02003 0.93611 0.78347 0.91889 0.92674 0.92171 0.92517 0.92220 0.92095 0.76660 0.84513 0.90267 0.89770 0.90750 0.90520 0.90605 0.90205 0.91731 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.08 13.06 55.49 0.72 -27.35 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 7 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.72 -17.94 5.12 -53.43 -0.27 -18.22 16 10 C 0.18 3.60 2.77 -67.93 -0.19 3.41 16 11 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 12 C -0.14 -2.43 5.50 -26.73 -0.15 -2.58 16 13 C -0.11 -1.69 5.92 -26.73 -0.16 -1.85 16 14 C -0.12 -1.73 5.49 -26.73 -0.15 -1.88 16 15 C 0.15 2.16 2.45 -67.96 -0.17 1.99 16 16 H 0.09 1.44 7.58 -51.93 -0.39 1.05 16 17 N -0.72 -9.05 5.07 -55.02 -0.28 -9.33 16 18 C 0.56 7.81 7.76 -12.66 -0.10 7.71 16 19 O -0.54 -9.56 16.43 5.27 0.09 -9.47 16 20 C -0.19 -2.03 6.09 -102.72 -0.63 -2.66 16 21 C -0.08 -0.74 10.43 -36.01 -0.38 -1.12 16 22 C -0.11 -0.69 6.80 -26.85 -0.18 -0.88 16 23 C -0.12 -0.77 7.16 -25.08 -0.18 -0.95 16 24 C -0.09 -0.72 6.02 -26.86 -0.16 -0.88 16 25 C -0.13 -2.08 4.85 -26.76 -0.13 -2.21 16 26 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.38 10.02 7.80 -40.82 -0.32 9.70 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.40 4.09 7.61 -40.82 -0.31 3.78 16 35 H 0.14 1.32 8.03 -52.49 -0.42 0.90 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 0.56 7.83 -51.93 -0.41 0.15 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 346.16 15.07 5.22 5.22 Total: -1.00 -32.02 346.16 -9.67 -41.68 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -7.31 Total: 9.13 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -2.81 Total: -9.07 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: 0.17 Total: -54.90 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.02 -9.67 -41.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981001789.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.520 kcal (2) G-P(sol) polarization free energy of solvation -32.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds