Wall clock time and date at job start Mon Mar 30 2020 23:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86809 * 119.99445 * 2 1 4 4 H 1.48506 * 109.46815 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46998 * 299.99565 * 3 2 1 6 6 H 1.48492 * 109.47251 * 59.99898 * 3 2 1 7 7 C 1.38804 * 120.00654 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00662 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99697 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00130 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47129 * 34.99299 * 10 9 7 12 12 C 1.52999 * 109.46944 * 274.99901 * 10 9 7 13 13 C 1.53005 * 109.47159 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47452 * 59.99536 * 13 12 10 15 15 C 1.53002 * 109.46817 * 300.00239 * 14 13 12 16 16 H 1.08992 * 109.47063 * 299.99823 * 15 14 13 17 17 N 1.46499 * 109.46799 * 179.97438 * 15 14 13 18 18 C 1.34778 * 119.99771 * 85.00174 * 17 15 14 19 19 O 1.21612 * 120.00506 * 359.97438 * 18 17 15 20 20 C 1.47103 * 120.00016 * 180.02562 * 18 17 15 21 21 C 1.32613 * 124.62331 * 179.69975 * 20 18 17 22 22 C 1.51112 * 110.75837 * 179.84170 * 21 20 18 23 23 C 1.54574 * 104.90438 * 343.80250 * 22 21 20 24 24 C 1.51117 * 124.61909 * 359.97438 * 20 18 17 25 25 C 1.52997 * 109.47473 * 154.99556 * 10 9 7 26 26 H 0.96993 * 120.00293 * 0.02562 * 1 2 3 27 27 H 0.97000 * 120.00379 * 359.97438 * 9 7 2 28 28 H 1.09000 * 109.47486 * 59.99569 * 12 10 9 29 29 H 1.09002 * 109.46716 * 299.99651 * 12 10 9 30 30 H 1.09002 * 109.46935 * 299.99411 * 13 12 10 31 31 H 1.09001 * 109.46812 * 179.97438 * 13 12 10 32 32 H 1.08993 * 109.47194 * 179.97438 * 14 13 12 33 33 H 1.09002 * 109.46695 * 59.99734 * 14 13 12 34 34 H 0.97006 * 120.00568 * 264.99947 * 17 15 14 35 35 H 1.08001 * 124.62012 * 0.02562 * 21 20 18 36 36 H 1.08997 * 110.51586 * 224.84580 * 22 21 20 37 37 H 1.09006 * 110.24379 * 102.62226 * 22 21 20 38 38 H 1.09000 * 110.98517 * 266.71099 * 23 22 21 39 39 H 1.08999 * 110.98235 * 142.90923 * 23 22 21 40 40 H 1.08996 * 110.36648 * 315.43826 * 24 20 18 41 41 H 1.09000 * 110.36370 * 77.76026 * 24 20 18 42 42 H 1.09002 * 109.47153 * 59.99757 * 25 10 9 43 43 H 1.09001 * 109.46832 * 299.99948 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2126 6 1 1.8913 2.3966 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9690 -3.5504 0.5899 12 6 2.4221 -4.0355 -1.4365 13 6 3.1866 -5.3608 -1.4366 14 6 2.3091 -6.4559 -0.8271 15 6 1.9453 -6.0770 0.6100 16 1 2.8560 -5.9712 1.1994 17 7 1.1046 -7.1254 1.1934 18 6 1.6734 -8.2080 1.7598 19 8 2.8845 -8.3149 1.7862 20 6 0.8292 -9.2609 2.3451 21 6 1.2900 -10.3642 2.9188 22 6 0.1518 -11.2253 3.4151 23 6 -1.0784 -10.2895 3.4282 24 6 -0.6816 -9.2356 2.3694 25 6 1.1812 -4.7521 0.6102 26 1 -0.4850 0.8400 -0.0004 27 1 0.3557 -2.3881 0.0005 28 1 3.0469 -3.2551 -1.8709 29 1 1.5113 -4.1418 -2.0258 30 1 4.0974 -5.2549 -0.8471 31 1 3.4454 -5.6308 -2.4604 32 1 2.8536 -7.4001 -0.8276 33 1 1.3983 -6.5617 -1.4166 34 1 0.1385 -7.0403 1.1720 35 1 2.3363 -10.6119 3.0203 36 1 0.3602 -11.5919 4.4202 37 1 -0.0140 -12.0604 2.7344 38 1 -1.2081 -9.8288 4.4075 39 1 -1.9792 -10.8247 3.1278 40 1 -1.0398 -8.2490 2.6634 41 1 -1.0813 -9.5098 1.3931 42 1 0.2704 -4.8584 0.0209 43 1 0.9221 -4.4822 1.6340 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981001789.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:54 Heat of formation + Delta-G solvation = -54.131230 kcal Electronic energy + Delta-G solvation = -21562.873592 eV Core-core repulsion = 18413.315128 eV Total energy + Delta-G solvation = -3149.558464 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.26401 -39.63570 -38.45630 -36.25191 -34.83870 -32.95553 -31.21101 -30.07396 -29.51279 -28.82365 -25.72949 -24.05364 -23.16626 -22.19437 -21.38662 -21.06968 -19.79394 -19.00659 -18.08616 -17.43894 -16.66760 -16.39500 -16.10387 -15.76206 -15.50360 -15.22346 -15.01364 -14.86884 -14.30022 -13.78900 -13.64644 -13.54157 -13.41703 -12.94051 -12.91264 -12.83121 -12.58276 -12.27850 -12.15681 -12.06270 -12.03480 -11.99963 -11.96748 -11.66930 -11.50092 -11.39951 -10.91156 -10.85370 -10.15881 -9.80765 -9.00491 -7.94371 -5.22301 0.39096 1.47204 1.47377 1.57407 2.17803 2.27483 2.56485 3.38970 3.53162 3.61835 3.66824 3.84596 4.01813 4.08693 4.22535 4.25594 4.29257 4.33316 4.42688 4.51028 4.55701 4.65056 4.74368 4.80816 4.83770 4.92142 4.99267 5.00954 5.10037 5.15006 5.19561 5.19998 5.33608 5.36282 5.39801 5.48135 5.49391 5.53133 5.56239 5.64715 6.28577 6.56771 7.21870 7.34814 8.09924 8.34186 9.29198 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028169 B = 0.003295 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.752388 B = 8495.537682 C = 9050.197074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.968 3.032 4 H -0.269 1.269 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.236 4.236 8 H 0.072 0.928 9 N -0.736 5.736 10 C 0.177 3.823 11 H 0.035 0.965 12 C -0.126 4.126 13 C -0.106 4.106 14 C -0.115 4.115 15 C 0.157 3.843 16 H 0.066 0.934 17 N -0.707 5.707 18 C 0.559 3.441 19 O -0.590 6.590 20 C -0.215 4.215 21 C -0.071 4.071 22 C -0.103 4.103 23 C -0.120 4.120 24 C -0.090 4.090 25 C -0.114 4.114 26 H 0.251 0.749 27 H 0.374 0.626 28 H 0.042 0.958 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.413 0.587 35 H 0.127 0.873 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.646 -23.873 3.826 24.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.798 3.202 4 H -0.193 1.193 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.368 4.368 8 H 0.090 0.910 9 N -0.375 5.375 10 C 0.068 3.932 11 H 0.053 0.947 12 C -0.166 4.166 13 C -0.145 4.145 14 C -0.154 4.154 15 C 0.052 3.948 16 H 0.084 0.916 17 N -0.357 5.357 18 C 0.349 3.651 19 O -0.473 6.473 20 C -0.218 4.218 21 C -0.091 4.091 22 C -0.140 4.140 23 C -0.157 4.157 24 C -0.127 4.127 25 C -0.153 4.153 26 H 0.059 0.941 27 H 0.206 0.794 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.249 0.751 35 H 0.145 0.855 36 H 0.111 0.889 37 H 0.119 0.881 38 H 0.093 0.907 39 H 0.114 0.886 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.095 0.905 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.665 -23.795 3.854 24.163 hybrid contribution -0.113 1.481 -0.102 1.489 sum -1.778 -22.314 3.752 22.697 Atomic orbital electron populations 1.69804 1.06432 1.25890 1.59777 1.25492 0.96378 1.00835 1.03986 0.85142 0.78222 0.80177 0.76662 1.19305 1.22023 1.22086 1.19615 0.91307 0.85289 1.40622 0.91014 1.42578 1.05464 1.00776 1.88713 1.20298 0.93794 0.84747 0.94323 0.94688 1.22091 0.99695 0.96340 0.98480 1.21418 0.98039 0.93742 1.01302 1.21800 1.00491 0.98277 0.94798 1.20760 0.93697 0.85930 0.94434 0.91584 1.45911 1.11011 1.20295 1.58518 1.18534 0.87302 0.82220 0.77063 1.90756 1.16251 1.79535 1.60722 1.21930 0.97501 0.96550 1.05801 1.24344 1.00530 0.93142 0.91102 1.21544 0.91635 0.98048 1.02754 1.22459 0.98224 0.96015 0.99012 1.21306 0.89049 1.01171 1.01184 1.21863 0.99170 0.92940 1.01327 0.94053 0.79398 0.93884 0.92676 0.92442 0.90448 0.92246 0.90677 0.75063 0.85506 0.88861 0.88130 0.90673 0.88581 0.90460 0.89200 0.90527 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.98 13.06 21.65 0.28 -58.70 16 2 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 3 Si 0.97 46.48 29.55 68.60 2.03 48.51 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 7 C -0.24 -13.19 9.93 84.03 0.83 -12.36 16 8 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 9 N -0.74 -36.89 5.12 -322.95 -1.65 -38.55 16 10 C 0.18 6.99 2.77 44.99 0.12 7.12 16 11 H 0.04 1.47 8.08 -2.39 -0.02 1.45 16 12 C -0.13 -4.42 5.50 30.60 0.17 -4.26 16 13 C -0.11 -3.00 5.92 30.60 0.18 -2.82 16 14 C -0.12 -3.06 5.49 30.59 0.17 -2.89 16 15 C 0.16 4.50 2.45 44.98 0.11 4.61 16 16 H 0.07 2.21 7.58 -2.39 -0.02 2.19 16 17 N -0.71 -17.23 5.07 -446.22 -2.26 -19.49 16 18 C 0.56 15.28 7.76 86.57 0.67 15.95 16 19 O -0.59 -21.00 16.43 -4.07 -0.07 -21.06 16 20 C -0.21 -4.31 6.09 -18.56 -0.11 -4.42 16 21 C -0.07 -1.24 10.43 24.66 0.26 -0.99 16 22 C -0.10 -1.04 6.80 30.51 0.21 -0.84 16 23 C -0.12 -1.13 7.16 31.66 0.23 -0.91 16 24 C -0.09 -1.18 6.02 30.51 0.18 -1.00 16 25 C -0.11 -3.64 4.85 30.58 0.15 -3.49 16 26 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 27 H 0.37 19.87 7.80 -92.71 -0.72 19.15 16 28 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.41 7.83 7.61 -92.70 -0.71 7.13 16 35 H 0.13 2.41 8.03 -2.91 -0.02 2.39 16 36 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 38 H 0.07 0.71 8.14 -2.39 -0.02 0.70 16 39 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.08 0.98 7.83 -2.39 -0.02 0.96 16 41 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.06 2.02 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -69.52 346.16 1.53 -67.99 By element: Atomic # 1 Polarization: 31.84 SS G_CDS: -0.43 Total: 31.41 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: 3.64 Total: -10.11 kcal Atomic # 7 Polarization: -113.10 SS G_CDS: -3.63 Total: -116.73 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.07 Total: -21.06 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -69.52 1.53 -67.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981001789.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.863 kcal (2) G-P(sol) polarization free energy of solvation -69.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds