Wall clock time and date at job start Mon Mar 30 2020 23:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00187 * 2 1 4 4 H 1.48502 * 109.46897 * 269.99720 * 3 2 1 5 5 H 1.48498 * 109.46953 * 29.99619 * 3 2 1 6 6 H 1.48497 * 109.47269 * 149.99725 * 3 2 1 7 7 C 1.38815 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00045 * 0.02562 * 7 2 1 9 9 N 1.36934 * 119.99987 * 180.02562 * 7 2 1 10 10 C 1.46506 * 119.99886 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47068 * 324.99719 * 10 9 7 12 12 C 1.52997 * 109.47277 * 85.00091 * 10 9 7 13 13 C 1.53002 * 109.47092 * 60.00025 * 12 10 9 14 14 C 1.53001 * 109.46963 * 60.00194 * 13 12 10 15 15 C 1.53000 * 109.46886 * 299.99499 * 14 13 12 16 16 H 1.09002 * 109.47398 * 300.00496 * 15 14 13 17 17 N 1.46499 * 109.46840 * 180.02562 * 15 14 13 18 18 C 1.34781 * 119.99874 * 85.00543 * 17 15 14 19 19 O 1.21611 * 120.00011 * 359.97438 * 18 17 15 20 20 C 1.47103 * 119.99949 * 179.97438 * 18 17 15 21 21 C 1.32618 * 124.61846 * 179.69316 * 20 18 17 22 22 C 1.51116 * 110.75569 * 179.84770 * 21 20 18 23 23 C 1.54578 * 104.90123 * 343.80752 * 22 21 20 24 24 C 1.51114 * 124.62026 * 0.02562 * 20 18 17 25 25 C 1.53002 * 109.47233 * 60.00670 * 15 14 13 26 26 H 0.97000 * 119.99577 * 0.02562 * 1 2 3 27 27 H 0.97001 * 120.00128 * 359.97438 * 9 7 2 28 28 H 1.09002 * 109.47045 * 179.97438 * 12 10 9 29 29 H 1.09000 * 109.47140 * 299.99799 * 12 10 9 30 30 H 1.09000 * 109.46497 * 180.02562 * 13 12 10 31 31 H 1.09002 * 109.47067 * 299.99853 * 13 12 10 32 32 H 1.09001 * 109.46652 * 179.97438 * 14 13 12 33 33 H 1.08992 * 109.47514 * 59.99933 * 14 13 12 34 34 H 0.97002 * 120.00410 * 264.99761 * 17 15 14 35 35 H 1.07998 * 124.61836 * 0.02562 * 21 20 18 36 36 H 1.09006 * 110.51430 * 224.85660 * 22 21 20 37 37 H 1.08992 * 110.24247 * 102.62466 * 22 21 20 38 38 H 1.09003 * 110.98329 * 266.71381 * 23 22 21 39 39 H 1.08999 * 110.98188 * 142.91519 * 23 22 21 40 40 H 1.08998 * 110.36593 * 315.43335 * 24 20 18 41 41 H 1.08993 * 110.36541 * 77.64715 * 24 20 18 42 42 H 1.09002 * 109.47075 * 59.99068 * 25 15 14 43 43 H 1.08996 * 109.47407 * 180.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 1 3.5645 -3.2066 0.5902 12 6 4.2588 -2.9752 -1.4360 13 6 5.0275 -1.9425 -2.2628 14 6 6.4145 -1.7307 -1.6526 15 6 6.2677 -1.2264 -0.2155 16 1 5.7227 -0.2824 -0.2156 17 7 7.5958 -1.0230 0.3686 18 6 8.2508 0.1372 0.1654 19 8 7.7397 1.0151 -0.5032 20 6 9.5841 0.3417 0.7524 21 6 10.3108 1.4414 0.6068 22 6 11.6244 1.3167 1.3434 23 6 11.4259 0.1283 2.3117 24 6 10.3153 -0.6756 1.5974 25 6 5.4991 -2.2590 0.6114 26 1 -0.4849 0.8401 -0.0004 27 1 3.8646 -0.3621 0.0007 28 1 4.8042 -3.9189 -1.4360 29 1 3.2708 -3.1261 -1.8707 30 1 5.1316 -2.3016 -3.2867 31 1 4.4825 -0.9985 -2.2629 32 1 6.9622 -0.9954 -2.2419 33 1 6.9595 -2.6746 -1.6525 34 1 8.0036 -1.7233 0.9017 35 1 10.0042 2.3091 0.0415 36 1 11.8379 2.2287 1.9009 37 1 12.4312 1.1039 0.6421 38 1 11.0906 0.4736 3.2898 39 1 12.3389 -0.4606 2.3993 40 1 9.6384 -1.1188 2.3279 41 1 10.7511 -1.4500 0.9664 42 1 6.0441 -3.2030 0.6114 43 1 5.3941 -1.8996 1.6350 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981001792.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:59 Heat of formation + Delta-G solvation = -25.609590 kcal Electronic energy + Delta-G solvation = -22182.353038 eV Core-core repulsion = 19034.031365 eV Total energy + Delta-G solvation = -3148.321673 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.21127 -38.67330 -37.50132 -34.58112 -33.07049 -31.16391 -30.15736 -29.21069 -28.71555 -28.00547 -23.48894 -22.88100 -21.96114 -21.51563 -20.69275 -19.26414 -18.24492 -17.70017 -17.26054 -16.13894 -15.76086 -15.10022 -14.71795 -14.50715 -14.11847 -13.97503 -13.65548 -13.17636 -13.03061 -12.68523 -12.47567 -12.32959 -12.20583 -12.07538 -11.93152 -11.59408 -11.55188 -11.49783 -10.99602 -10.86789 -10.72760 -10.30082 -10.23387 -10.15252 -9.91568 -9.56337 -9.50372 -9.20567 -8.91738 -8.77782 -7.21944 -5.72896 -3.07725 1.25661 3.25419 3.30723 3.44691 3.49717 3.53476 4.21470 4.27993 4.64646 4.64820 4.78662 4.97357 5.02286 5.12041 5.31390 5.34087 5.39331 5.43559 5.46399 5.48986 5.57688 5.60820 5.63580 5.73176 5.79880 5.82417 5.99769 6.00745 6.07907 6.10181 6.27398 6.31805 6.35774 6.43666 6.63424 6.71028 6.77110 6.92497 7.00713 7.60215 8.03680 8.31111 8.46452 9.25233 9.98355 10.17720 11.45456 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021101 B = 0.004620 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.654792 B = 6059.794533 C = 6736.333421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.007 3.993 3 Si 0.877 3.123 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.241 4.241 8 H 0.091 0.909 9 N -0.746 5.746 10 C 0.185 3.815 11 H 0.060 0.940 12 C -0.135 4.135 13 C -0.111 4.111 14 C -0.122 4.122 15 C 0.143 3.857 16 H 0.090 0.910 17 N -0.719 5.719 18 C 0.560 3.440 19 O -0.539 6.539 20 C -0.192 4.192 21 C -0.079 4.079 22 C -0.107 4.107 23 C -0.123 4.123 24 C -0.091 4.091 25 C -0.131 4.131 26 H 0.259 0.741 27 H 0.361 0.639 28 H 0.047 0.953 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.397 0.603 35 H 0.138 0.862 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.782 -4.086 2.868 25.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.189 4.189 3 Si 0.708 3.292 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.371 4.371 8 H 0.109 0.891 9 N -0.390 5.390 10 C 0.075 3.925 11 H 0.078 0.922 12 C -0.176 4.176 13 C -0.149 4.149 14 C -0.160 4.160 15 C 0.039 3.961 16 H 0.108 0.892 17 N -0.369 5.369 18 C 0.348 3.652 19 O -0.417 6.417 20 C -0.195 4.195 21 C -0.098 4.098 22 C -0.144 4.144 23 C -0.161 4.161 24 C -0.128 4.128 25 C -0.170 4.170 26 H 0.069 0.931 27 H 0.195 0.805 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.231 0.769 35 H 0.155 0.845 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 24.141 -3.531 2.414 24.517 hybrid contribution 0.695 0.957 0.156 1.192 sum 24.836 -2.575 2.571 25.101 Atomic orbital electron populations 1.69698 1.05066 1.25747 1.57743 1.24626 0.95153 0.97038 1.02086 0.86662 0.79247 0.85240 0.78077 1.20944 1.21739 1.20334 1.19070 0.80625 0.94622 1.42792 0.89133 1.42884 1.03989 1.01970 1.90204 1.20130 0.89363 0.89534 0.93477 0.92167 1.22153 1.00122 0.96728 0.98549 1.21374 0.94486 1.01149 0.97874 1.21869 0.98280 1.00422 0.95477 1.21066 0.81784 1.00479 0.92742 0.89214 1.46063 1.19569 1.17228 1.54044 1.18012 0.84809 0.82163 0.80206 1.90821 1.68249 1.42836 1.39812 1.21906 0.95239 0.98363 1.03974 1.24049 0.93940 0.96976 0.94879 1.21473 0.95660 0.99413 0.97812 1.22429 0.98618 0.96385 0.98628 1.21249 0.96783 0.97106 0.97683 1.22125 0.97356 0.97972 0.99561 0.93122 0.80480 0.93455 0.91431 0.92845 0.90970 0.92249 0.92394 0.76935 0.84475 0.90241 0.89757 0.90762 0.90544 0.90754 0.90263 0.91518 0.91285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.73 13.97 55.49 0.78 -28.95 16 2 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 3 Si 0.88 23.23 27.74 -169.99 -4.71 18.52 16 4 H -0.28 -7.52 7.11 56.52 0.40 -7.12 16 5 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 6 H -0.28 -7.13 6.52 56.52 0.37 -6.76 16 7 C -0.24 -6.79 10.41 -15.06 -0.16 -6.95 16 8 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 9 N -0.75 -17.61 4.08 -53.42 -0.22 -17.82 16 10 C 0.19 3.44 3.10 -67.93 -0.21 3.23 16 11 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 12 C -0.14 -2.30 5.61 -26.73 -0.15 -2.45 16 13 C -0.11 -1.86 5.77 -26.73 -0.15 -2.01 16 14 C -0.12 -1.85 5.49 -26.73 -0.15 -2.00 16 15 C 0.14 2.28 2.28 -67.93 -0.15 2.12 16 16 H 0.09 1.80 5.94 -51.93 -0.31 1.50 16 17 N -0.72 -9.56 5.07 -54.99 -0.28 -9.84 16 18 C 0.56 8.48 7.76 -12.66 -0.10 8.38 16 19 O -0.54 -10.59 16.43 5.27 0.09 -10.51 16 20 C -0.19 -2.18 6.09 -102.73 -0.63 -2.80 16 21 C -0.08 -0.81 10.43 -36.00 -0.38 -1.18 16 22 C -0.11 -0.74 6.80 -26.85 -0.18 -0.92 16 23 C -0.12 -0.78 7.17 -25.07 -0.18 -0.96 16 24 C -0.09 -0.71 6.02 -26.84 -0.16 -0.87 16 25 C -0.13 -1.98 5.08 -26.73 -0.14 -2.11 16 26 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 27 H 0.36 8.72 3.92 -40.82 -0.16 8.56 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.07 1.44 7.60 -51.93 -0.39 1.04 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.40 3.94 7.61 -40.82 -0.31 3.63 16 35 H 0.14 1.49 8.03 -52.49 -0.42 1.07 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.53 7.83 -51.93 -0.41 0.12 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 338.62 15.07 5.10 5.10 Total: -1.00 -33.91 338.62 -9.16 -43.07 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -7.09 Total: 8.84 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -2.83 Total: -8.41 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: 0.28 Total: -56.61 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -4.71 Total: 18.52 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.91 -9.16 -43.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981001792.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.464 kcal (2) G-P(sol) polarization free energy of solvation -33.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds