Wall clock time and date at job start Mon Mar 30 2020 23:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00187 * 2 1 4 4 H 1.48502 * 109.46897 * 269.99720 * 3 2 1 5 5 H 1.48498 * 109.46953 * 29.99619 * 3 2 1 6 6 H 1.48497 * 109.47269 * 149.99725 * 3 2 1 7 7 C 1.38815 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00045 * 0.02562 * 7 2 1 9 9 N 1.36934 * 119.99987 * 180.02562 * 7 2 1 10 10 C 1.46506 * 119.99886 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47068 * 324.99719 * 10 9 7 12 12 C 1.52997 * 109.47277 * 85.00091 * 10 9 7 13 13 C 1.53002 * 109.47092 * 60.00025 * 12 10 9 14 14 C 1.53001 * 109.46963 * 60.00194 * 13 12 10 15 15 C 1.53000 * 109.46886 * 299.99499 * 14 13 12 16 16 H 1.09002 * 109.47398 * 300.00496 * 15 14 13 17 17 N 1.46499 * 109.46840 * 180.02562 * 15 14 13 18 18 C 1.34781 * 119.99874 * 85.00543 * 17 15 14 19 19 O 1.21611 * 120.00011 * 359.97438 * 18 17 15 20 20 C 1.47103 * 119.99949 * 179.97438 * 18 17 15 21 21 C 1.32618 * 124.61846 * 179.69316 * 20 18 17 22 22 C 1.51116 * 110.75569 * 179.84770 * 21 20 18 23 23 C 1.54578 * 104.90123 * 343.80752 * 22 21 20 24 24 C 1.51114 * 124.62026 * 0.02562 * 20 18 17 25 25 C 1.53002 * 109.47233 * 60.00670 * 15 14 13 26 26 H 0.97000 * 119.99577 * 0.02562 * 1 2 3 27 27 H 0.97001 * 120.00128 * 359.97438 * 9 7 2 28 28 H 1.09002 * 109.47045 * 179.97438 * 12 10 9 29 29 H 1.09000 * 109.47140 * 299.99799 * 12 10 9 30 30 H 1.09000 * 109.46497 * 180.02562 * 13 12 10 31 31 H 1.09002 * 109.47067 * 299.99853 * 13 12 10 32 32 H 1.09001 * 109.46652 * 179.97438 * 14 13 12 33 33 H 1.08992 * 109.47514 * 59.99933 * 14 13 12 34 34 H 0.97002 * 120.00410 * 264.99761 * 17 15 14 35 35 H 1.07998 * 124.61836 * 0.02562 * 21 20 18 36 36 H 1.09006 * 110.51430 * 224.85660 * 22 21 20 37 37 H 1.08992 * 110.24247 * 102.62466 * 22 21 20 38 38 H 1.09003 * 110.98329 * 266.71381 * 23 22 21 39 39 H 1.08999 * 110.98188 * 142.91519 * 23 22 21 40 40 H 1.08998 * 110.36593 * 315.43335 * 24 20 18 41 41 H 1.08993 * 110.36541 * 77.64715 * 24 20 18 42 42 H 1.09002 * 109.47075 * 59.99068 * 25 15 14 43 43 H 1.08996 * 109.47407 * 180.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 1 3.5645 -3.2066 0.5902 12 6 4.2588 -2.9752 -1.4360 13 6 5.0275 -1.9425 -2.2628 14 6 6.4145 -1.7307 -1.6526 15 6 6.2677 -1.2264 -0.2155 16 1 5.7227 -0.2824 -0.2156 17 7 7.5958 -1.0230 0.3686 18 6 8.2508 0.1372 0.1654 19 8 7.7397 1.0151 -0.5032 20 6 9.5841 0.3417 0.7524 21 6 10.3108 1.4414 0.6068 22 6 11.6244 1.3167 1.3434 23 6 11.4259 0.1283 2.3117 24 6 10.3153 -0.6756 1.5974 25 6 5.4991 -2.2590 0.6114 26 1 -0.4849 0.8401 -0.0004 27 1 3.8646 -0.3621 0.0007 28 1 4.8042 -3.9189 -1.4360 29 1 3.2708 -3.1261 -1.8707 30 1 5.1316 -2.3016 -3.2867 31 1 4.4825 -0.9985 -2.2629 32 1 6.9622 -0.9954 -2.2419 33 1 6.9595 -2.6746 -1.6525 34 1 8.0036 -1.7233 0.9017 35 1 10.0042 2.3091 0.0415 36 1 11.8379 2.2287 1.9009 37 1 12.4312 1.1039 0.6421 38 1 11.0906 0.4736 3.2898 39 1 12.3389 -0.4606 2.3993 40 1 9.6384 -1.1188 2.3279 41 1 10.7511 -1.4500 0.9664 42 1 6.0441 -3.2030 0.6114 43 1 5.3941 -1.8996 1.6350 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981001792.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:58 Heat of formation + Delta-G solvation = -48.285497 kcal Electronic energy + Delta-G solvation = -22183.336339 eV Core-core repulsion = 19034.031365 eV Total energy + Delta-G solvation = -3149.304974 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.33887 -39.82238 -38.51437 -36.14081 -34.77171 -33.07264 -31.23561 -30.44867 -29.77767 -28.90069 -25.41865 -24.09829 -23.37776 -22.49847 -21.53049 -20.49846 -19.86758 -19.39313 -18.15211 -17.35279 -16.60533 -16.52462 -16.22365 -15.83911 -15.75543 -15.36021 -15.06180 -14.69146 -14.16285 -13.95414 -13.73272 -13.58332 -13.48037 -13.06307 -13.00081 -12.92351 -12.60973 -12.52511 -12.24287 -12.22055 -12.06501 -11.99481 -11.86725 -11.64553 -11.55048 -11.28733 -10.92881 -10.85461 -10.17240 -9.82472 -9.29225 -8.05197 -5.34274 0.35788 1.28808 1.32921 1.36402 2.16493 2.24739 2.41818 3.27566 3.51055 3.58144 3.63829 3.79738 3.88588 4.07350 4.11946 4.22392 4.29210 4.30692 4.37936 4.50664 4.63355 4.71663 4.75190 4.80243 4.83001 4.91048 4.96010 4.98077 5.06998 5.11423 5.18939 5.25567 5.35232 5.38178 5.39080 5.43096 5.52604 5.55462 5.59910 5.80012 6.21200 6.56701 7.07298 7.23023 7.86374 8.01871 9.16968 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021101 B = 0.004620 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.654792 B = 6059.794533 C = 6736.333421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.056 4.056 3 Si 0.935 3.065 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.270 1.270 7 C -0.214 4.214 8 H 0.068 0.932 9 N -0.752 5.752 10 C 0.172 3.828 11 H 0.059 0.941 12 C -0.127 4.127 13 C -0.110 4.110 14 C -0.111 4.111 15 C 0.146 3.854 16 H 0.041 0.959 17 N -0.702 5.702 18 C 0.552 3.448 19 O -0.597 6.597 20 C -0.212 4.212 21 C -0.078 4.078 22 C -0.103 4.103 23 C -0.118 4.118 24 C -0.086 4.086 25 C -0.118 4.118 26 H 0.256 0.744 27 H 0.359 0.641 28 H 0.090 0.910 29 H 0.039 0.961 30 H 0.072 0.928 31 H 0.029 0.971 32 H 0.043 0.957 33 H 0.095 0.905 34 H 0.417 0.583 35 H 0.119 0.881 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.115 0.885 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.711 -5.952 3.855 29.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.248 4.248 3 Si 0.765 3.235 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.195 1.195 7 C -0.346 4.346 8 H 0.086 0.914 9 N -0.396 5.396 10 C 0.064 3.936 11 H 0.077 0.923 12 C -0.167 4.167 13 C -0.148 4.148 14 C -0.150 4.150 15 C 0.041 3.959 16 H 0.059 0.941 17 N -0.353 5.353 18 C 0.342 3.658 19 O -0.480 6.480 20 C -0.215 4.215 21 C -0.098 4.098 22 C -0.139 4.139 23 C -0.156 4.156 24 C -0.123 4.123 25 C -0.156 4.156 26 H 0.065 0.935 27 H 0.192 0.808 28 H 0.109 0.891 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.113 0.887 34 H 0.255 0.745 35 H 0.137 0.863 36 H 0.109 0.891 37 H 0.119 0.881 38 H 0.093 0.907 39 H 0.118 0.882 40 H 0.100 0.900 41 H 0.113 0.887 42 H 0.133 0.867 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 28.142 -5.467 3.431 28.873 hybrid contribution -0.490 1.467 -0.192 1.559 sum 27.652 -3.999 3.238 28.127 Atomic orbital electron populations 1.69830 1.06557 1.26202 1.60673 1.25221 0.95798 0.99998 1.03756 0.85717 0.78261 0.81851 0.77677 1.21437 1.21805 1.19529 1.19111 0.82687 0.93404 1.39372 0.91405 1.43002 1.02470 1.04065 1.90034 1.20490 0.90980 0.87177 0.94985 0.92284 1.22038 0.99375 0.98550 0.96703 1.21342 0.95030 0.99099 0.99312 1.21774 0.97187 1.01657 0.94345 1.20842 0.82718 0.98524 0.93862 0.94058 1.45827 1.18371 1.17463 1.53624 1.18702 0.86028 0.81661 0.79417 1.90790 1.69921 1.44709 1.42566 1.21963 0.93761 1.00289 1.05457 1.24360 0.95487 0.95961 0.94018 1.21541 0.93848 1.00500 0.98028 1.22465 0.99054 0.95940 0.98118 1.21307 0.96953 0.96551 0.97479 1.22008 0.95180 0.99890 0.98543 0.93476 0.80788 0.89111 0.94177 0.90978 0.95203 0.93791 0.88693 0.74513 0.86273 0.89101 0.88069 0.90673 0.88223 0.89955 0.88722 0.86701 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.47 13.97 21.65 0.30 -64.17 16 2 C -0.06 -3.44 5.50 84.86 0.47 -2.97 16 3 Si 0.94 49.83 27.74 68.60 1.90 51.73 16 4 H -0.29 -15.37 7.11 99.48 0.71 -14.66 16 5 H -0.29 -15.43 7.11 99.48 0.71 -14.73 16 6 H -0.27 -13.82 6.52 99.48 0.65 -13.17 16 7 C -0.21 -12.37 10.41 84.03 0.87 -11.49 16 8 H 0.07 4.18 8.06 -2.91 -0.02 4.15 16 9 N -0.75 -35.78 4.08 -322.92 -1.32 -37.09 16 10 C 0.17 6.13 3.10 44.99 0.14 6.27 16 11 H 0.06 2.14 8.08 -2.39 -0.02 2.13 16 12 C -0.13 -4.06 5.61 30.59 0.17 -3.88 16 13 C -0.11 -3.55 5.77 30.60 0.18 -3.38 16 14 C -0.11 -3.14 5.49 30.59 0.17 -2.97 16 15 C 0.15 4.42 2.28 44.99 0.10 4.52 16 16 H 0.04 1.69 5.94 -2.39 -0.01 1.67 16 17 N -0.70 -17.19 5.07 -446.13 -2.26 -19.45 16 18 C 0.55 16.40 7.76 86.57 0.67 17.07 16 19 O -0.60 -24.28 16.43 -4.07 -0.07 -24.34 16 20 C -0.21 -4.46 6.09 -18.57 -0.11 -4.57 16 21 C -0.08 -1.52 10.43 24.66 0.26 -1.26 16 22 C -0.10 -1.11 6.80 30.52 0.21 -0.90 16 23 C -0.12 -1.04 7.17 31.67 0.23 -0.81 16 24 C -0.09 -1.02 6.02 30.52 0.18 -0.84 16 25 C -0.12 -3.19 5.08 30.60 0.16 -3.03 16 26 H 0.26 16.16 8.31 -92.71 -0.77 15.39 16 27 H 0.36 17.59 3.92 -92.71 -0.36 17.23 16 28 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.03 1.20 7.60 -2.39 -0.02 1.19 16 32 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.42 6.71 7.61 -92.71 -0.71 6.00 16 35 H 0.12 2.67 8.03 -2.91 -0.02 2.64 16 36 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 37 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.08 0.84 7.83 -2.39 -0.02 0.83 16 41 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -78.60 338.62 2.12 -76.48 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: -0.13 Total: 25.08 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: 3.69 Total: -8.25 kcal Atomic # 7 Polarization: -117.44 SS G_CDS: -3.28 Total: -120.71 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.07 Total: -24.34 kcal Atomic # 14 Polarization: 49.83 SS G_CDS: 1.90 Total: 51.73 kcal Total: -78.60 2.12 -76.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981001792.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.199 kcal (2) G-P(sol) polarization free energy of solvation -78.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds