Wall clock time and date at job start Tue Mar 31 2020 00:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 120.00059 * 2 1 4 4 H 1.48494 * 109.47341 * 240.00600 * 3 2 1 5 5 H 1.48506 * 109.46764 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47018 * 120.00293 * 3 2 1 7 7 C 1.38806 * 120.00355 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00404 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99716 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99968 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47097 * 35.00132 * 10 9 7 12 12 C 1.52997 * 109.47204 * 274.99638 * 10 9 7 13 13 C 1.53002 * 109.47092 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.46963 * 60.00194 * 13 12 10 15 15 C 1.53000 * 109.46886 * 299.99499 * 14 13 12 16 16 H 1.09002 * 109.47398 * 300.00496 * 15 14 13 17 17 N 1.46499 * 109.46840 * 180.02562 * 15 14 13 18 18 C 1.34781 * 119.99874 * 85.00543 * 17 15 14 19 19 O 1.21611 * 120.00011 * 359.97438 * 18 17 15 20 20 C 1.47103 * 119.99949 * 179.97438 * 18 17 15 21 21 C 1.32992 * 119.99646 * 179.97438 * 20 18 17 22 22 C 1.51403 * 136.32174 * 359.63023 * 21 20 18 23 23 C 1.53376 * 87.52048 * 206.05694 * 22 21 20 24 24 C 1.51408 * 136.31271 * 179.97438 * 21 20 18 25 25 C 1.53002 * 109.47233 * 60.00670 * 15 14 13 26 26 H 0.97006 * 119.99644 * 359.97438 * 1 2 3 27 27 H 0.96995 * 119.99760 * 359.97438 * 9 7 2 28 28 H 1.09002 * 109.47045 * 299.99966 * 12 10 9 29 29 H 1.09000 * 109.47140 * 59.99873 * 12 10 9 30 30 H 1.09000 * 109.46497 * 180.02562 * 13 12 10 31 31 H 1.09002 * 109.47067 * 299.99853 * 13 12 10 32 32 H 1.09001 * 109.46652 * 179.97438 * 14 13 12 33 33 H 1.08992 * 109.47514 * 59.99933 * 14 13 12 34 34 H 0.97002 * 120.00410 * 264.99761 * 17 15 14 35 35 H 1.07998 * 120.00110 * 359.97438 * 20 18 17 36 36 H 1.09002 * 113.55949 * 320.64371 * 22 21 20 37 37 H 1.09005 * 113.55923 * 91.37225 * 22 21 20 38 38 H 1.09004 * 113.96550 * 220.28866 * 23 22 21 39 39 H 1.09001 * 113.70989 * 88.81133 * 23 22 21 40 40 H 1.08996 * 113.56421 * 268.62878 * 24 21 20 41 41 H 1.09007 * 113.56132 * 39.29015 * 24 21 20 42 42 H 1.09002 * 109.47075 * 59.99068 * 25 15 14 43 43 H 1.08996 * 109.47407 * 180.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 1 2.9688 -3.5505 0.5889 12 6 2.4219 -4.0356 -1.4375 13 6 3.1864 -5.3609 -1.4375 14 6 2.3087 -6.4560 -0.8281 15 6 1.9449 -6.0771 0.6090 16 1 2.8557 -5.9712 1.1985 17 7 1.1050 -7.1259 1.1927 18 6 1.6747 -8.2080 1.7593 19 8 2.8859 -8.3140 1.7856 20 6 0.8313 -9.2609 2.3460 21 6 1.3935 -10.3289 2.9046 22 6 2.8034 -10.8320 3.1306 23 6 2.2225 -12.2513 3.1508 24 6 0.9088 -11.5873 3.5929 25 6 1.1804 -4.7518 0.6091 26 1 -0.4850 0.8401 0.0004 27 1 0.3556 -2.3880 0.0002 28 1 1.5112 -4.1419 -2.0269 29 1 3.0468 -3.2552 -1.8719 30 1 3.4459 -5.6305 -2.4613 31 1 4.0971 -5.2551 -0.8480 32 1 2.8532 -7.4002 -0.8285 33 1 1.3980 -6.5618 -1.4175 34 1 0.1389 -7.0415 1.1716 35 1 -0.2443 -9.1665 2.3231 36 1 3.4717 -10.6483 2.2893 37 1 3.2290 -10.5218 4.0850 38 1 2.6643 -12.8999 3.9073 39 1 2.1711 -12.7179 2.1670 40 1 0.8150 -11.4842 4.6739 41 1 0.0223 -12.0225 3.1315 42 1 0.2697 -4.8576 0.0195 43 1 0.9217 -4.4816 1.6328 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981009855.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:36 Heat of formation + Delta-G solvation = -4.331699 kcal Electronic energy + Delta-G solvation = -21326.153416 eV Core-core repulsion = 18178.754422 eV Total energy + Delta-G solvation = -3147.398995 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.04111 -38.82061 -37.65262 -34.58961 -33.28636 -31.26278 -31.03854 -29.07555 -27.71334 -26.03661 -23.98112 -23.54652 -21.97934 -21.39582 -20.31561 -19.50860 -18.35547 -17.20156 -16.76822 -16.23016 -15.75546 -15.09445 -14.79921 -14.39940 -14.36282 -13.88017 -13.71946 -13.46243 -13.12886 -12.74589 -12.69833 -12.23562 -12.10166 -12.02445 -11.96607 -11.28016 -10.97829 -10.91038 -10.85170 -10.76177 -10.68966 -10.31734 -10.24366 -10.14492 -9.95905 -9.65479 -9.49213 -9.40329 -8.88985 -8.80530 -6.94692 -5.75467 -3.03974 1.23223 3.21533 3.32892 3.45360 3.49698 3.50602 4.14809 4.23737 4.47567 4.59629 4.81229 4.94890 5.05807 5.14809 5.23636 5.33967 5.37233 5.41051 5.51821 5.52895 5.63112 5.71971 5.74985 5.78752 5.90845 5.93480 6.00958 6.01337 6.07372 6.17595 6.34625 6.36991 6.42506 6.55245 6.59865 6.69499 6.76488 6.99456 7.15103 7.63975 7.71799 8.33622 8.43460 9.54446 10.12011 10.46863 11.47275 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035789 B = 0.002954 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.177078 B = 9475.810357 C = 9776.050483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.183 3.817 11 H 0.048 0.952 12 C -0.136 4.136 13 C -0.114 4.114 14 C -0.123 4.123 15 C 0.149 3.851 16 H 0.087 0.913 17 N -0.720 5.720 18 C 0.548 3.452 19 O -0.545 6.545 20 C -0.197 4.197 21 C -0.066 4.066 22 C -0.105 4.105 23 C -0.143 4.143 24 C -0.109 4.109 25 C -0.129 4.129 26 H 0.255 0.745 27 H 0.383 0.617 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.399 0.601 35 H 0.131 0.869 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.610 -23.298 4.241 23.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.365 5.365 10 C 0.073 3.927 11 H 0.066 0.934 12 C -0.177 4.177 13 C -0.153 4.153 14 C -0.162 4.162 15 C 0.045 3.955 16 H 0.105 0.895 17 N -0.370 5.370 18 C 0.337 3.663 19 O -0.424 6.424 20 C -0.218 4.218 21 C -0.068 4.068 22 C -0.142 4.142 23 C -0.180 4.180 24 C -0.146 4.146 25 C -0.168 4.168 26 H 0.065 0.935 27 H 0.217 0.783 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.233 0.767 35 H 0.149 0.851 36 H 0.105 0.895 37 H 0.115 0.885 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.118 0.882 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.589 -23.188 4.273 23.632 hybrid contribution -0.542 1.060 -0.141 1.198 sum 1.048 -22.128 4.132 22.535 Atomic orbital electron populations 1.69652 1.05100 1.25718 1.57849 1.24733 0.95514 0.97663 1.03114 0.86277 0.78525 0.83593 0.77866 1.21278 1.21735 1.21280 1.19206 0.90993 0.84090 1.42513 0.91207 1.42399 1.05735 0.99715 1.88629 1.20099 0.94107 0.85532 0.92965 0.93393 1.22286 0.99700 0.95226 1.00470 1.21487 0.98536 0.95407 0.99902 1.21872 1.00030 0.98760 0.95501 1.21006 0.94496 0.86110 0.93902 0.89527 1.46059 1.10421 1.21198 1.59323 1.18411 0.87950 0.82033 0.77919 1.90762 1.14423 1.78375 1.58848 1.21658 0.99679 0.94319 1.06157 1.23443 0.98739 0.92244 0.92355 1.22208 0.94718 0.93811 1.03477 1.22734 0.96618 0.96578 1.02112 1.22353 0.98571 0.92881 1.00750 1.22089 0.99332 0.93408 1.01968 0.93511 0.78345 0.92686 0.91923 0.92567 0.92207 0.92259 0.92139 0.76711 0.85078 0.89495 0.88474 0.90471 0.89783 0.88177 0.90467 0.91739 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.19 13.06 55.49 0.72 -27.47 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.72 -18.02 5.12 -53.42 -0.27 -18.29 16 10 C 0.18 3.62 2.77 -67.93 -0.19 3.43 16 11 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 12 C -0.14 -2.44 5.50 -26.73 -0.15 -2.59 16 13 C -0.11 -1.70 5.92 -26.73 -0.16 -1.86 16 14 C -0.12 -1.73 5.49 -26.73 -0.15 -1.88 16 15 C 0.15 2.17 2.45 -67.93 -0.17 2.01 16 16 H 0.09 1.43 7.58 -51.93 -0.39 1.04 16 17 N -0.72 -8.97 5.07 -54.99 -0.28 -9.25 16 18 C 0.55 7.43 7.73 -12.66 -0.10 7.33 16 19 O -0.54 -9.20 14.81 5.27 0.08 -9.13 16 20 C -0.20 -2.06 10.03 -37.81 -0.38 -2.44 16 21 C -0.07 -0.64 6.93 -100.48 -0.70 -1.34 16 22 C -0.11 -1.01 6.99 -27.56 -0.19 -1.20 16 23 C -0.14 -0.98 8.17 -26.18 -0.21 -1.20 16 24 C -0.11 -0.73 7.96 -27.39 -0.22 -0.95 16 25 C -0.13 -2.09 4.86 -26.73 -0.13 -2.22 16 26 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 27 H 0.38 10.07 7.80 -40.82 -0.32 9.75 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.40 3.95 8.59 -40.82 -0.35 3.60 16 35 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.09 1.00 7.49 -51.93 -0.39 0.61 16 37 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 348.74 15.07 5.26 5.26 Total: -1.00 -31.93 348.74 -9.83 -41.77 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -7.34 Total: 9.78 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -2.98 Total: -10.14 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: 0.17 Total: -55.00 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.08 Total: -9.13 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.93 -9.83 -41.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981009855.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.434 kcal (2) G-P(sol) polarization free energy of solvation -31.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds