Wall clock time and date at job start Tue Mar 31 2020 00:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 120.00059 * 2 1 4 4 H 1.48494 * 109.47341 * 240.00600 * 3 2 1 5 5 H 1.48506 * 109.46764 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47018 * 120.00293 * 3 2 1 7 7 C 1.38806 * 120.00355 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00404 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99716 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99968 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47097 * 35.00132 * 10 9 7 12 12 C 1.52997 * 109.47204 * 274.99638 * 10 9 7 13 13 C 1.53002 * 109.47092 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.46963 * 60.00194 * 13 12 10 15 15 C 1.53000 * 109.46886 * 299.99499 * 14 13 12 16 16 H 1.09002 * 109.47398 * 300.00496 * 15 14 13 17 17 N 1.46499 * 109.46840 * 180.02562 * 15 14 13 18 18 C 1.34781 * 119.99874 * 85.00543 * 17 15 14 19 19 O 1.21611 * 120.00011 * 359.97438 * 18 17 15 20 20 C 1.47103 * 119.99949 * 179.97438 * 18 17 15 21 21 C 1.32992 * 119.99646 * 179.97438 * 20 18 17 22 22 C 1.51403 * 136.32174 * 359.63023 * 21 20 18 23 23 C 1.53376 * 87.52048 * 206.05694 * 22 21 20 24 24 C 1.51408 * 136.31271 * 179.97438 * 21 20 18 25 25 C 1.53002 * 109.47233 * 60.00670 * 15 14 13 26 26 H 0.97006 * 119.99644 * 359.97438 * 1 2 3 27 27 H 0.96995 * 119.99760 * 359.97438 * 9 7 2 28 28 H 1.09002 * 109.47045 * 299.99966 * 12 10 9 29 29 H 1.09000 * 109.47140 * 59.99873 * 12 10 9 30 30 H 1.09000 * 109.46497 * 180.02562 * 13 12 10 31 31 H 1.09002 * 109.47067 * 299.99853 * 13 12 10 32 32 H 1.09001 * 109.46652 * 179.97438 * 14 13 12 33 33 H 1.08992 * 109.47514 * 59.99933 * 14 13 12 34 34 H 0.97002 * 120.00410 * 264.99761 * 17 15 14 35 35 H 1.07998 * 120.00110 * 359.97438 * 20 18 17 36 36 H 1.09002 * 113.55949 * 320.64371 * 22 21 20 37 37 H 1.09005 * 113.55923 * 91.37225 * 22 21 20 38 38 H 1.09004 * 113.96550 * 220.28866 * 23 22 21 39 39 H 1.09001 * 113.70989 * 88.81133 * 23 22 21 40 40 H 1.08996 * 113.56421 * 268.62878 * 24 21 20 41 41 H 1.09007 * 113.56132 * 39.29015 * 24 21 20 42 42 H 1.09002 * 109.47075 * 59.99068 * 25 15 14 43 43 H 1.08996 * 109.47407 * 180.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 1 2.9688 -3.5505 0.5889 12 6 2.4219 -4.0356 -1.4375 13 6 3.1864 -5.3609 -1.4375 14 6 2.3087 -6.4560 -0.8281 15 6 1.9449 -6.0771 0.6090 16 1 2.8557 -5.9712 1.1985 17 7 1.1050 -7.1259 1.1927 18 6 1.6747 -8.2080 1.7593 19 8 2.8859 -8.3140 1.7856 20 6 0.8313 -9.2609 2.3460 21 6 1.3935 -10.3289 2.9046 22 6 2.8034 -10.8320 3.1306 23 6 2.2225 -12.2513 3.1508 24 6 0.9088 -11.5873 3.5929 25 6 1.1804 -4.7518 0.6091 26 1 -0.4850 0.8401 0.0004 27 1 0.3556 -2.3880 0.0002 28 1 1.5112 -4.1419 -2.0269 29 1 3.0468 -3.2552 -1.8719 30 1 3.4459 -5.6305 -2.4613 31 1 4.0971 -5.2551 -0.8480 32 1 2.8532 -7.4002 -0.8285 33 1 1.3980 -6.5618 -1.4175 34 1 0.1389 -7.0415 1.1716 35 1 -0.2443 -9.1665 2.3231 36 1 3.4717 -10.6483 2.2893 37 1 3.2290 -10.5218 4.0850 38 1 2.6643 -12.8999 3.9073 39 1 2.1711 -12.7179 2.1670 40 1 0.8150 -11.4842 4.6739 41 1 0.0223 -12.0225 3.1315 42 1 0.2697 -4.8576 0.0195 43 1 0.9217 -4.4816 1.6328 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981009855.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:35 Heat of formation + Delta-G solvation = -24.158519 kcal Electronic energy + Delta-G solvation = -21327.013172 eV Core-core repulsion = 18178.754422 eV Total energy + Delta-G solvation = -3148.258750 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.10574 -39.74985 -38.82530 -36.19946 -34.78261 -32.97001 -32.05914 -30.39751 -29.30871 -26.65964 -25.73089 -24.66249 -23.22778 -22.60625 -21.46528 -20.90294 -19.43680 -18.89169 -17.89572 -17.39400 -16.50960 -16.40480 -16.04713 -15.82382 -15.41729 -15.39786 -15.02405 -14.97102 -14.73003 -14.22405 -13.57118 -13.43116 -13.32093 -12.91154 -12.90466 -12.79407 -12.62840 -12.29245 -12.17900 -12.06025 -11.97495 -11.89346 -11.64580 -11.57906 -11.41116 -11.29651 -10.86981 -10.61868 -10.26379 -9.88556 -9.00401 -7.94025 -5.22027 0.40647 1.46960 1.49492 1.55477 2.20127 2.34902 2.56839 3.38674 3.42045 3.60766 3.63416 3.84643 3.86536 4.03588 4.15761 4.26952 4.29406 4.30728 4.45363 4.52685 4.56673 4.63089 4.66721 4.75292 4.75842 4.86704 4.95783 5.01881 5.05585 5.11230 5.15965 5.20721 5.28445 5.34592 5.36853 5.49274 5.50243 5.54674 5.65287 5.70017 6.28671 6.66270 7.32276 7.34848 8.10362 8.34531 9.29191 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035789 B = 0.002954 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.177078 B = 9475.810357 C = 9776.050483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.970 3.030 4 H -0.279 1.279 5 H -0.295 1.295 6 H -0.280 1.280 7 C -0.239 4.239 8 H 0.072 0.928 9 N -0.736 5.736 10 C 0.177 3.823 11 H 0.034 0.966 12 C -0.126 4.126 13 C -0.106 4.106 14 C -0.115 4.115 15 C 0.159 3.841 16 H 0.065 0.935 17 N -0.711 5.711 18 C 0.542 3.458 19 O -0.586 6.586 20 C -0.211 4.211 21 C -0.072 4.072 22 C -0.120 4.120 23 C -0.133 4.133 24 C -0.096 4.096 25 C -0.114 4.114 26 H 0.251 0.749 27 H 0.374 0.626 28 H 0.054 0.946 29 H 0.041 0.959 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.414 0.586 35 H 0.161 0.839 36 H 0.059 0.941 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.117 0.883 41 H 0.094 0.906 42 H 0.076 0.924 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.168 -25.198 4.480 25.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.267 4.267 3 Si 0.799 3.201 4 H -0.205 1.205 5 H -0.221 1.221 6 H -0.206 1.206 7 C -0.371 4.371 8 H 0.090 0.910 9 N -0.375 5.375 10 C 0.068 3.932 11 H 0.053 0.947 12 C -0.166 4.166 13 C -0.145 4.145 14 C -0.153 4.153 15 C 0.054 3.946 16 H 0.083 0.917 17 N -0.362 5.362 18 C 0.333 3.667 19 O -0.469 6.469 20 C -0.231 4.231 21 C -0.074 4.074 22 C -0.157 4.157 23 C -0.171 4.171 24 C -0.132 4.132 25 C -0.153 4.153 26 H 0.060 0.940 27 H 0.206 0.794 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.250 0.750 35 H 0.179 0.821 36 H 0.078 0.922 37 H 0.116 0.884 38 H 0.113 0.887 39 H 0.104 0.896 40 H 0.135 0.865 41 H 0.113 0.887 42 H 0.094 0.906 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.153 -25.126 4.508 25.553 hybrid contribution -0.328 1.573 -0.189 1.617 sum 0.825 -23.553 4.318 23.960 Atomic orbital electron populations 1.69799 1.06452 1.26047 1.59652 1.25506 0.96384 1.00885 1.03941 0.85271 0.77261 0.79496 0.78110 1.20494 1.22079 1.20606 1.19548 0.91297 0.85330 1.40890 0.91045 1.42568 1.05442 1.00777 1.88746 1.20302 0.93802 0.84779 0.94274 0.94742 1.22090 0.99659 0.96332 0.98524 1.21416 0.98052 0.93791 1.01250 1.21792 1.00390 0.98179 0.94950 1.20713 0.93696 0.85942 0.94274 0.91704 1.45900 1.11004 1.20399 1.58865 1.18996 0.87812 0.82539 0.77357 1.90744 1.16330 1.79284 1.60498 1.21721 1.00677 0.93679 1.07046 1.23923 0.99236 0.92826 0.91369 1.22330 0.94560 0.96347 1.02465 1.22725 0.96356 0.95095 1.02893 1.22390 0.98959 0.90437 1.01441 1.21871 0.99138 0.93002 1.01266 0.94037 0.79419 0.92727 0.93967 0.90555 0.92482 0.92297 0.90779 0.74974 0.82124 0.92224 0.88367 0.88669 0.89616 0.86537 0.88725 0.90571 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.27 13.06 21.65 0.28 -58.99 16 2 C -0.07 -4.33 5.50 84.86 0.47 -3.86 16 3 Si 0.97 46.58 29.55 68.60 2.03 48.60 16 4 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 5 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 7 C -0.24 -13.38 9.93 84.03 0.83 -12.55 16 8 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 9 N -0.74 -37.10 5.12 -322.93 -1.65 -38.75 16 10 C 0.18 7.04 2.77 44.99 0.12 7.16 16 11 H 0.03 1.46 8.08 -2.39 -0.02 1.44 16 12 C -0.13 -4.46 5.50 30.59 0.17 -4.29 16 13 C -0.11 -3.03 5.92 30.60 0.18 -2.84 16 14 C -0.11 -3.05 5.49 30.59 0.17 -2.88 16 15 C 0.16 4.53 2.45 44.99 0.11 4.65 16 16 H 0.06 2.17 7.58 -2.39 -0.02 2.15 16 17 N -0.71 -16.90 5.07 -446.13 -2.26 -19.16 16 18 C 0.54 14.35 7.73 86.57 0.67 15.02 16 19 O -0.59 -20.10 14.81 -4.07 -0.06 -20.16 16 20 C -0.21 -4.04 10.03 23.43 0.23 -3.81 16 21 C -0.07 -1.28 6.93 -17.17 -0.12 -1.40 16 22 C -0.12 -2.22 6.99 30.06 0.21 -2.01 16 23 C -0.13 -1.53 8.17 30.95 0.25 -1.28 16 24 C -0.10 -0.99 7.96 30.17 0.24 -0.75 16 25 C -0.11 -3.64 4.86 30.60 0.15 -3.49 16 26 H 0.25 14.92 8.31 -92.70 -0.77 14.15 16 27 H 0.37 19.98 7.80 -92.71 -0.72 19.26 16 28 H 0.05 1.93 8.14 -2.39 -0.02 1.92 16 29 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.08 1.90 8.14 -2.39 -0.02 1.89 16 31 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.41 7.40 8.59 -92.71 -0.80 6.60 16 35 H 0.16 2.01 8.06 -2.91 -0.02 1.98 16 36 H 0.06 1.42 7.49 -2.39 -0.02 1.40 16 37 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 38 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 39 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 42 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -69.78 348.74 1.50 -68.28 By element: Atomic # 1 Polarization: 33.04 SS G_CDS: -0.52 Total: 32.52 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: 3.69 Total: -12.34 kcal Atomic # 7 Polarization: -113.27 SS G_CDS: -3.63 Total: -116.90 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.06 Total: -20.16 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.60 kcal Total: -69.78 1.50 -68.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981009855.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.123 kcal (2) G-P(sol) polarization free energy of solvation -69.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds