Wall clock time and date at job start Tue Mar 31 2020 00:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00321 * 2 1 4 4 H 1.48497 * 109.47106 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47143 * 300.00281 * 3 2 1 6 6 H 1.48505 * 109.46816 * 59.99985 * 3 2 1 7 7 C 1.38811 * 119.99810 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00011 * 200.62942 * 7 2 1 9 9 N 1.36938 * 119.99882 * 20.63586 * 7 2 1 10 10 C 1.43467 * 118.93818 * 206.73644 * 9 7 2 11 11 C 1.53803 * 108.00304 * 273.59934 * 10 9 7 12 12 C 1.47045 * 111.86504 * 281.72712 * 11 10 9 13 13 N 1.48213 * 110.36803 * 58.24834 * 12 11 10 14 14 C 1.34781 * 119.97092 * 102.51770 * 13 12 11 15 15 O 1.21277 * 119.99986 * 185.71927 * 14 13 12 16 16 C 1.50698 * 119.99943 * 5.71547 * 14 13 12 17 17 C 1.53001 * 119.29983 * 267.78126 * 16 14 13 18 18 C 1.53873 * 121.33070 * 195.94859 * 16 14 13 19 19 H 1.09000 * 121.33292 * 359.43861 * 18 16 14 20 20 C 1.54271 * 106.60056 * 221.93968 * 18 16 14 21 21 C 1.54888 * 104.19426 * 23.60927 * 20 18 16 22 22 C 1.54267 * 117.41001 * 62.12745 * 16 14 13 23 23 C 1.43613 * 120.05900 * 282.49157 * 13 12 11 24 24 C 1.48856 * 118.94154 * 26.75691 * 9 7 2 25 25 H 0.97005 * 119.99858 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.76446 * 33.23504 * 10 9 7 27 27 H 1.08996 * 109.76289 * 153.95596 * 10 9 7 28 28 H 1.08995 * 109.00917 * 42.31082 * 11 10 9 29 29 H 1.09000 * 109.00450 * 161.09543 * 11 10 9 30 30 H 1.08995 * 109.30343 * 297.97827 * 12 11 10 31 31 H 1.08997 * 109.17925 * 178.43893 * 12 11 10 32 32 H 1.08995 * 117.46335 * 356.29701 * 17 16 14 33 33 H 1.09008 * 117.45764 * 141.09438 * 17 16 14 34 34 H 1.09007 * 110.48277 * 264.93205 * 20 18 16 35 35 H 1.08997 * 110.59924 * 142.34638 * 20 18 16 36 36 H 1.09000 * 110.75419 * 203.74686 * 21 20 18 37 37 H 1.09002 * 110.75506 * 80.37302 * 21 20 18 38 38 H 1.09001 * 110.48570 * 235.04147 * 22 16 14 39 39 H 1.08994 * 110.49008 * 357.55549 * 22 16 14 40 40 H 1.09005 * 108.87372 * 329.88927 * 23 13 12 41 41 H 1.08999 * 108.87679 * 211.45111 * 23 13 12 42 42 H 1.09001 * 109.47751 * 260.60317 * 24 9 7 43 43 H 1.09000 * 109.47858 * 20.62951 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0382 -1.2320 0.3301 9 7 1.3913 -2.3502 -0.4169 10 6 1.8451 -3.6100 0.0980 11 6 3.0074 -4.0938 -0.7856 12 6 2.5297 -4.6746 -2.0492 13 7 1.7267 -3.6821 -2.8021 14 6 2.2687 -3.0354 -3.8530 15 8 1.6503 -2.1500 -4.4048 16 6 3.6433 -3.4123 -4.3424 17 6 4.8632 -2.6695 -3.7936 18 6 4.4408 -2.4875 -5.2786 19 1 4.0304 -1.5377 -5.6217 20 6 5.0948 -3.3943 -6.3416 21 6 4.2014 -4.6593 -6.3634 22 6 3.8406 -4.8488 -4.8690 23 6 0.3714 -3.4094 -2.4132 24 6 0.2698 -2.2508 -1.3906 25 1 -0.4850 0.8401 -0.0004 26 1 2.1895 -3.4861 1.1247 27 1 1.0320 -4.3352 0.0670 28 1 3.6597 -3.2494 -1.0079 29 1 3.5772 -4.8471 -0.2415 30 1 1.9144 -5.5482 -1.8343 31 1 3.3868 -4.9765 -2.6511 32 1 4.6815 -1.8438 -3.1057 33 1 5.7618 -3.2547 -3.5977 34 1 6.1131 -3.6513 -6.0494 35 1 5.0902 -2.9071 -7.3166 36 1 4.7574 -5.5185 -6.7384 37 1 3.3044 -4.4885 -6.9587 38 1 4.6562 -5.3407 -4.3391 39 1 2.9195 -5.4225 -4.7667 40 1 -0.0562 -4.3091 -1.9705 41 1 -0.2043 -3.1477 -3.3009 42 1 -0.6797 -2.3171 -0.8594 43 1 0.3272 -1.2970 -1.9150 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981653624.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:50 Heat of formation + Delta-G solvation = 20.401154 kcal Electronic energy + Delta-G solvation = -23563.299789 eV Core-core repulsion = 20416.973292 eV Total energy + Delta-G solvation = -3146.326498 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.42362 -38.32204 -36.66289 -34.26390 -32.27412 -31.57985 -30.95134 -28.74967 -27.36507 -25.40253 -23.94911 -22.99303 -22.44296 -20.74752 -20.11690 -19.54675 -17.98425 -16.72310 -16.50192 -15.73492 -15.43078 -14.90782 -14.51613 -14.15923 -13.72573 -13.35433 -13.31720 -13.15407 -12.98819 -12.93155 -12.44000 -12.23419 -11.72536 -11.51552 -11.33035 -11.15805 -11.03718 -10.96111 -10.87949 -10.67736 -10.51293 -10.27255 -10.15496 -10.14122 -9.75507 -9.66295 -9.57072 -9.08151 -8.38116 -7.95298 -6.62051 -5.73622 -3.14299 3.10200 3.41839 3.45505 3.50515 3.51155 3.78187 4.45112 4.57015 4.67016 4.78855 4.87322 5.21332 5.25817 5.35282 5.44008 5.45448 5.56486 5.56700 5.63928 5.69535 5.75928 5.78937 5.87548 5.90789 5.95817 6.00330 6.11403 6.22498 6.25437 6.27207 6.41014 6.44374 6.47013 6.47702 6.82642 7.03825 7.08579 7.47385 7.62960 7.87530 8.01755 8.51627 8.81777 9.26398 9.96104 10.42838 11.34303 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019535 B = 0.006661 C = 0.005892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.982503 B = 4202.729586 C = 4750.814514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.009 3.991 3 Si 0.893 3.107 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.291 1.291 7 C -0.258 4.258 8 H 0.062 0.938 9 N -0.587 5.587 10 C 0.163 3.837 11 C -0.172 4.172 12 C 0.123 3.877 13 N -0.580 5.580 14 C 0.556 3.444 15 O -0.543 6.543 16 C -0.165 4.165 17 C -0.125 4.125 18 C -0.138 4.138 19 H 0.116 0.884 20 C -0.094 4.094 21 C -0.122 4.122 22 C -0.082 4.082 23 C 0.092 3.908 24 C 0.167 3.833 25 H 0.252 0.748 26 H 0.045 0.955 27 H 0.032 0.968 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.067 0.933 42 H 0.039 0.961 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.570 -12.567 -8.824 17.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.190 4.190 3 Si 0.723 3.277 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.218 1.218 7 C -0.388 4.388 8 H 0.080 0.920 9 N -0.309 5.309 10 C 0.034 3.966 11 C -0.213 4.213 12 C 0.001 3.999 13 N -0.310 5.310 14 C 0.343 3.657 15 O -0.420 6.420 16 C -0.168 4.168 17 C -0.162 4.162 18 C -0.156 4.156 19 H 0.134 0.866 20 C -0.131 4.131 21 C -0.160 4.160 22 C -0.120 4.120 23 C -0.033 4.033 24 C 0.041 3.959 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.050 0.950 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.125 0.875 33 H 0.116 0.884 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.057 0.943 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.060 -11.990 -9.106 17.078 hybrid contribution 0.344 0.991 0.188 1.066 sum 8.404 -10.999 -8.919 16.467 Atomic orbital electron populations 1.70071 1.05321 1.25385 1.53425 1.24949 0.95076 0.98334 1.00620 0.86387 0.79563 0.84569 0.77223 1.20350 1.21550 1.21815 1.19077 0.93986 0.85937 1.39760 0.92020 1.43629 1.38722 1.01399 1.47100 1.20250 0.93191 0.88304 0.94843 1.21904 1.01775 1.00670 0.96991 1.20743 0.95105 0.90359 0.93680 1.47246 1.13720 1.40989 1.29083 1.19213 0.85757 0.81027 0.79708 1.90663 1.62630 1.30087 1.58625 1.22296 0.92288 0.95475 1.06773 1.23492 0.95609 1.01795 0.95291 1.23712 1.01864 0.99877 0.90194 0.86551 1.21954 0.98448 0.94832 0.97881 1.22681 0.99686 0.97433 0.96192 1.21941 1.01666 0.92970 0.95376 1.21925 0.81903 0.99893 0.99552 1.21778 0.90331 0.95628 0.88147 0.93774 0.93662 0.95001 0.91368 0.92697 0.92147 0.90677 0.87535 0.88447 0.91330 0.91166 0.91278 0.91230 0.90843 0.91090 0.92559 0.91424 0.94294 0.91211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.86 11.44 55.49 0.63 -26.22 16 2 C 0.01 0.27 4.77 -17.43 -0.08 0.19 16 3 Si 0.89 22.67 29.60 -169.99 -5.03 17.63 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.51 7.11 56.52 0.40 -7.10 16 6 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 7 C -0.26 -7.15 9.21 -15.06 -0.14 -7.29 16 8 H 0.06 1.70 7.91 -52.49 -0.42 1.29 16 9 N -0.59 -14.54 2.53 -171.99 -0.43 -14.98 16 10 C 0.16 3.29 5.63 -5.23 -0.03 3.26 16 11 C -0.17 -2.86 5.63 -29.17 -0.16 -3.03 16 12 C 0.12 1.84 5.45 -5.96 -0.03 1.81 16 13 N -0.58 -10.69 2.46 -176.72 -0.43 -11.12 16 14 C 0.56 10.88 7.13 -10.98 -0.08 10.80 16 15 O -0.54 -12.92 16.45 5.56 0.09 -12.83 16 16 C -0.17 -2.48 1.38 -154.54 -0.21 -2.69 16 17 C -0.12 -1.76 10.00 -25.42 -0.25 -2.01 16 18 C -0.14 -1.93 6.69 -88.19 -0.59 -2.52 16 19 H 0.12 1.84 8.14 -51.93 -0.42 1.42 16 20 C -0.09 -0.99 6.64 -25.07 -0.17 -1.15 16 21 C -0.12 -1.24 6.91 -24.74 -0.17 -1.41 16 22 C -0.08 -0.93 4.67 -25.07 -0.12 -1.05 16 23 C 0.09 1.83 5.21 -4.59 -0.02 1.81 16 24 C 0.17 4.10 5.22 -1.75 -0.01 4.10 16 25 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.05 0.94 8.02 -51.93 -0.42 0.52 16 27 H 0.03 0.60 7.59 -51.93 -0.39 0.20 16 28 H 0.07 1.31 7.91 -51.93 -0.41 0.90 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.79 8.05 -51.93 -0.42 0.37 16 31 H 0.07 0.96 4.81 -51.93 -0.25 0.71 16 32 H 0.11 1.77 8.14 -51.93 -0.42 1.35 16 33 H 0.10 1.11 8.14 -51.92 -0.42 0.69 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.71 7.95 -51.93 -0.41 0.30 16 39 H 0.07 0.82 7.88 -51.93 -0.41 0.41 16 40 H 0.06 0.98 7.73 -51.93 -0.40 0.57 16 41 H 0.07 1.37 7.46 -51.93 -0.39 0.99 16 42 H 0.04 1.01 8.00 -51.93 -0.42 0.60 16 43 H 0.07 2.01 6.82 -51.93 -0.35 1.66 16 LS Contribution 331.93 15.07 5.00 5.00 Total: -1.00 -32.58 331.93 -9.45 -42.02 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -7.20 Total: -0.29 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -2.07 Total: 0.79 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: -0.23 Total: -52.32 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.09 Total: -12.83 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.03 Total: 17.63 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.58 -9.45 -42.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981653624.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.424 kcal (2) G-P(sol) polarization free energy of solvation -32.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds