Wall clock time and date at job start Tue Mar 31 2020 00:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00321 * 2 1 4 4 H 1.48497 * 109.47106 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47143 * 300.00281 * 3 2 1 6 6 H 1.48505 * 109.46816 * 59.99985 * 3 2 1 7 7 C 1.38811 * 119.99810 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00011 * 200.62942 * 7 2 1 9 9 N 1.36938 * 119.99882 * 20.63586 * 7 2 1 10 10 C 1.43467 * 118.93818 * 206.73644 * 9 7 2 11 11 C 1.53803 * 108.00304 * 273.59934 * 10 9 7 12 12 C 1.47045 * 111.86504 * 281.72712 * 11 10 9 13 13 N 1.48213 * 110.36803 * 58.24834 * 12 11 10 14 14 C 1.34781 * 119.97092 * 102.51770 * 13 12 11 15 15 O 1.21277 * 119.99986 * 185.71927 * 14 13 12 16 16 C 1.50698 * 119.99943 * 5.71547 * 14 13 12 17 17 C 1.53001 * 119.29983 * 267.78126 * 16 14 13 18 18 C 1.53873 * 121.33070 * 195.94859 * 16 14 13 19 19 H 1.09000 * 121.33292 * 359.43861 * 18 16 14 20 20 C 1.54271 * 106.60056 * 221.93968 * 18 16 14 21 21 C 1.54888 * 104.19426 * 23.60927 * 20 18 16 22 22 C 1.54267 * 117.41001 * 62.12745 * 16 14 13 23 23 C 1.43613 * 120.05900 * 282.49157 * 13 12 11 24 24 C 1.48856 * 118.94154 * 26.75691 * 9 7 2 25 25 H 0.97005 * 119.99858 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.76446 * 33.23504 * 10 9 7 27 27 H 1.08996 * 109.76289 * 153.95596 * 10 9 7 28 28 H 1.08995 * 109.00917 * 42.31082 * 11 10 9 29 29 H 1.09000 * 109.00450 * 161.09543 * 11 10 9 30 30 H 1.08995 * 109.30343 * 297.97827 * 12 11 10 31 31 H 1.08997 * 109.17925 * 178.43893 * 12 11 10 32 32 H 1.08995 * 117.46335 * 356.29701 * 17 16 14 33 33 H 1.09008 * 117.45764 * 141.09438 * 17 16 14 34 34 H 1.09007 * 110.48277 * 264.93205 * 20 18 16 35 35 H 1.08997 * 110.59924 * 142.34638 * 20 18 16 36 36 H 1.09000 * 110.75419 * 203.74686 * 21 20 18 37 37 H 1.09002 * 110.75506 * 80.37302 * 21 20 18 38 38 H 1.09001 * 110.48570 * 235.04147 * 22 16 14 39 39 H 1.08994 * 110.49008 * 357.55549 * 22 16 14 40 40 H 1.09005 * 108.87372 * 329.88927 * 23 13 12 41 41 H 1.08999 * 108.87679 * 211.45111 * 23 13 12 42 42 H 1.09001 * 109.47751 * 260.60317 * 24 9 7 43 43 H 1.09000 * 109.47858 * 20.62951 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0382 -1.2320 0.3301 9 7 1.3913 -2.3502 -0.4169 10 6 1.8451 -3.6100 0.0980 11 6 3.0074 -4.0938 -0.7856 12 6 2.5297 -4.6746 -2.0492 13 7 1.7267 -3.6821 -2.8021 14 6 2.2687 -3.0354 -3.8530 15 8 1.6503 -2.1500 -4.4048 16 6 3.6433 -3.4123 -4.3424 17 6 4.8632 -2.6695 -3.7936 18 6 4.4408 -2.4875 -5.2786 19 1 4.0304 -1.5377 -5.6217 20 6 5.0948 -3.3943 -6.3416 21 6 4.2014 -4.6593 -6.3634 22 6 3.8406 -4.8488 -4.8690 23 6 0.3714 -3.4094 -2.4132 24 6 0.2698 -2.2508 -1.3906 25 1 -0.4850 0.8401 -0.0004 26 1 2.1895 -3.4861 1.1247 27 1 1.0320 -4.3352 0.0670 28 1 3.6597 -3.2494 -1.0079 29 1 3.5772 -4.8471 -0.2415 30 1 1.9144 -5.5482 -1.8343 31 1 3.3868 -4.9765 -2.6511 32 1 4.6815 -1.8438 -3.1057 33 1 5.7618 -3.2547 -3.5977 34 1 6.1131 -3.6513 -6.0494 35 1 5.0902 -2.9071 -7.3166 36 1 4.7574 -5.5185 -6.7384 37 1 3.3044 -4.4885 -6.9587 38 1 4.6562 -5.3407 -4.3391 39 1 2.9195 -5.4225 -4.7667 40 1 -0.0562 -4.3091 -1.9705 41 1 -0.2043 -3.1477 -3.3009 42 1 -0.6797 -2.3171 -0.8594 43 1 0.3272 -1.2970 -1.9150 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981653624.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:49 Heat of formation + Delta-G solvation = 0.742003 kcal Electronic energy + Delta-G solvation = -23564.152274 eV Core-core repulsion = 20416.973292 eV Total energy + Delta-G solvation = -3147.178982 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.72571 -39.63866 -38.30091 -36.06521 -33.92669 -32.97915 -32.43403 -30.04052 -28.83074 -27.12275 -25.68323 -24.50197 -23.59666 -21.85857 -21.49814 -21.08957 -19.31676 -18.66955 -17.80686 -17.37207 -17.00095 -16.27762 -15.90988 -15.75719 -15.53621 -14.91968 -14.85441 -14.30725 -14.17706 -14.05504 -13.94373 -13.81391 -13.37204 -13.10340 -12.91417 -12.79393 -12.47821 -12.27971 -12.15591 -12.07534 -11.96800 -11.82223 -11.77519 -11.59745 -11.41598 -11.27061 -10.63644 -10.56430 -10.51478 -9.53326 -8.68875 -7.91115 -5.33227 1.33517 1.38407 1.45687 1.63380 2.14027 2.45427 2.60176 3.22486 3.45986 3.58438 3.67174 3.69468 3.88351 4.11177 4.23310 4.29176 4.32526 4.43913 4.51161 4.53817 4.61205 4.69828 4.74675 4.77360 4.82128 4.84140 4.95429 4.98183 5.01349 5.09621 5.17937 5.21724 5.26890 5.28943 5.31080 5.49298 5.50430 5.57810 5.64690 5.87428 6.36021 6.55782 7.12263 7.31760 7.91213 8.33532 9.13797 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019535 B = 0.006661 C = 0.005892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.982503 B = 4202.729586 C = 4750.814514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.049 4.049 3 Si 0.947 3.053 4 H -0.265 1.265 5 H -0.303 1.303 6 H -0.285 1.285 7 C -0.254 4.254 8 H 0.062 0.938 9 N -0.600 5.600 10 C 0.152 3.848 11 C -0.157 4.157 12 C 0.118 3.882 13 N -0.581 5.581 14 C 0.541 3.459 15 O -0.603 6.603 16 C -0.172 4.172 17 C -0.116 4.116 18 C -0.147 4.147 19 H 0.081 0.919 20 C -0.084 4.084 21 C -0.119 4.119 22 C -0.075 4.075 23 C 0.105 3.895 24 C 0.179 3.821 25 H 0.246 0.754 26 H 0.038 0.962 27 H 0.051 0.949 28 H 0.038 0.962 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.107 0.893 32 H 0.068 0.932 33 H 0.137 0.863 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.103 0.897 37 H 0.052 0.948 38 H 0.106 0.894 39 H 0.071 0.929 40 H 0.093 0.907 41 H 0.055 0.945 42 H 0.016 0.984 43 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.491 -16.260 -9.252 21.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.245 4.245 3 Si 0.776 3.224 4 H -0.189 1.189 5 H -0.231 1.231 6 H -0.212 1.212 7 C -0.385 4.385 8 H 0.080 0.920 9 N -0.322 5.322 10 C 0.025 3.975 11 C -0.198 4.198 12 C -0.002 4.002 13 N -0.310 5.310 14 C 0.331 3.669 15 O -0.484 6.484 16 C -0.176 4.176 17 C -0.153 4.153 18 C -0.166 4.166 19 H 0.100 0.900 20 C -0.122 4.122 21 C -0.156 4.156 22 C -0.112 4.112 23 C -0.021 4.021 24 C 0.053 3.947 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.117 0.883 30 H 0.112 0.888 31 H 0.125 0.875 32 H 0.087 0.913 33 H 0.155 0.845 34 H 0.113 0.887 35 H 0.093 0.907 36 H 0.121 0.879 37 H 0.071 0.929 38 H 0.125 0.875 39 H 0.089 0.911 40 H 0.111 0.889 41 H 0.074 0.926 42 H 0.034 0.966 43 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 11.031 -15.747 -9.503 21.447 hybrid contribution -0.587 2.137 0.365 2.246 sum 10.444 -13.610 -9.138 19.438 Atomic orbital electron populations 1.70195 1.06558 1.25397 1.55629 1.25637 0.95812 1.01216 1.01800 0.85507 0.79137 0.81215 0.76525 1.18939 1.23078 1.21195 1.19361 0.93970 0.87231 1.37917 0.92009 1.43824 1.38488 1.02401 1.47514 1.20549 0.95096 0.86650 0.95171 1.21682 0.99767 1.00814 0.97496 1.21087 0.96394 0.90010 0.92742 1.47465 1.13344 1.41225 1.28976 1.20196 0.87282 0.80014 0.79426 1.90630 1.64606 1.32698 1.60500 1.22386 0.89468 0.98343 1.07358 1.23480 0.96497 1.00894 0.94468 1.23836 1.02068 0.99245 0.91418 0.90022 1.21982 0.99458 0.94056 0.96674 1.22690 0.99341 0.98286 0.95269 1.22033 1.02963 0.90027 0.96184 1.21610 0.83558 0.99226 0.97715 1.21436 0.89543 0.95124 0.88638 0.94491 0.94402 0.93036 0.94269 0.88300 0.88822 0.87541 0.91301 0.84480 0.88703 0.90703 0.87906 0.92878 0.87543 0.91062 0.88892 0.92640 0.96607 0.96749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.63 11.44 21.65 0.25 -58.39 16 2 C -0.05 -2.92 4.77 84.86 0.40 -2.52 16 3 Si 0.95 48.44 29.60 68.60 2.03 50.47 16 4 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.30 -16.07 7.11 99.48 0.71 -15.36 16 6 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 7 C -0.25 -14.45 9.21 84.03 0.77 -13.68 16 8 H 0.06 3.45 7.91 -2.91 -0.02 3.43 16 9 N -0.60 -30.18 2.53 -698.07 -1.76 -31.94 16 10 C 0.15 5.86 5.63 87.21 0.49 6.35 16 11 C -0.16 -4.67 5.63 29.01 0.16 -4.51 16 12 C 0.12 3.02 5.45 84.20 0.46 3.48 16 13 N -0.58 -20.74 2.46 -831.40 -2.04 -22.78 16 14 C 0.54 21.35 7.13 87.66 0.63 21.98 16 15 O -0.60 -30.41 16.45 -3.02 -0.05 -30.46 16 16 C -0.17 -4.87 1.38 -52.20 -0.07 -4.94 16 17 C -0.12 -3.09 10.00 31.44 0.31 -2.77 16 18 C -0.15 -4.00 6.69 -9.22 -0.06 -4.06 16 19 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 20 C -0.08 -1.50 6.64 31.67 0.21 -1.29 16 21 C -0.12 -1.92 6.91 31.89 0.22 -1.70 16 22 C -0.07 -1.36 4.67 31.67 0.15 -1.22 16 23 C 0.10 4.17 5.21 87.55 0.46 4.63 16 24 C 0.18 9.20 5.22 86.56 0.45 9.65 16 25 H 0.25 15.12 8.31 -92.70 -0.77 14.35 16 26 H 0.04 1.51 8.02 -2.39 -0.02 1.49 16 27 H 0.05 1.79 7.59 -2.39 -0.02 1.77 16 28 H 0.04 1.41 7.91 -2.39 -0.02 1.39 16 29 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.09 1.88 8.05 -2.39 -0.02 1.86 16 31 H 0.11 2.13 4.81 -2.39 -0.01 2.12 16 32 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.14 2.51 8.14 -2.38 -0.02 2.49 16 34 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.11 1.31 7.95 -2.39 -0.02 1.29 16 39 H 0.07 1.33 7.88 -2.39 -0.02 1.31 16 40 H 0.09 3.02 7.73 -2.38 -0.02 3.00 16 41 H 0.06 2.34 7.46 -2.39 -0.02 2.32 16 42 H 0.02 0.87 8.00 -2.39 -0.02 0.86 16 43 H 0.01 0.86 6.82 -2.39 -0.02 0.85 16 Total: -1.00 -78.40 331.93 3.98 -74.41 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 0.98 Total: 9.29 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: 4.58 Total: 9.41 kcal Atomic # 7 Polarization: -109.55 SS G_CDS: -3.56 Total: -113.11 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: -0.05 Total: -30.46 kcal Atomic # 14 Polarization: 48.44 SS G_CDS: 2.03 Total: 50.47 kcal Total: -78.40 3.98 -74.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981653624.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.154 kcal (2) G-P(sol) polarization free energy of solvation -78.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds