Wall clock time and date at job start Tue Mar 31 2020 00:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48500 * 109.47093 * 240.00123 * 3 2 1 5 5 H 1.48495 * 109.47002 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47239 * 119.99843 * 3 2 1 7 7 C 1.38815 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99568 * 179.72333 * 7 2 1 9 9 N 1.36929 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.49292 * 127.10670 * 0.02562 * 9 7 2 11 11 C 1.56228 * 106.51426 * 188.64246 * 10 9 7 12 12 C 1.52135 * 100.80710 * 23.44353 * 11 10 9 13 13 N 1.46494 * 111.08421 * 74.61244 * 12 11 10 14 14 C 1.34776 * 120.00353 * 61.01552 * 13 12 11 15 15 O 1.21286 * 119.99558 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00483 * 179.97438 * 14 13 12 17 17 C 1.53777 * 113.61516 * 279.13771 * 16 14 13 18 18 C 1.53949 * 87.01969 * 220.04739 * 17 16 14 19 19 C 1.53774 * 113.61566 * 181.52617 * 16 14 13 20 20 C 1.51226 * 122.12013 * 208.79624 * 12 11 10 21 21 C 1.55689 * 104.60636 * 141.27007 * 20 12 11 22 22 C 1.56282 * 105.93786 * 352.74945 * 21 20 12 23 23 C 1.42708 * 127.10282 * 179.70428 * 9 7 2 24 24 H 1.08996 * 108.17584 * 256.55804 * 23 9 7 25 25 H 0.97000 * 120.00284 * 359.97438 * 1 2 3 26 26 H 1.09004 * 110.04529 * 307.90351 * 10 9 7 27 27 H 1.08996 * 110.05113 * 69.37418 * 10 9 7 28 28 H 1.08993 * 111.15515 * 141.33099 * 11 10 9 29 29 H 1.09009 * 111.14950 * 265.51895 * 11 10 9 30 30 H 0.97004 * 120.00017 * 241.01026 * 13 12 11 31 31 H 1.08997 * 112.84474 * 50.33359 * 16 14 13 32 32 H 1.09001 * 113.61320 * 334.56667 * 17 16 14 33 33 H 1.08999 * 113.61730 * 105.46885 * 17 16 14 34 34 H 1.09003 * 113.53899 * 270.81098 * 18 17 16 35 35 H 1.08997 * 113.67369 * 139.93111 * 18 17 16 36 36 H 1.09001 * 113.62197 * 254.53162 * 19 16 14 37 37 H 1.09000 * 113.61481 * 25.43426 * 19 16 14 38 38 H 1.09002 * 110.40775 * 260.05209 * 20 12 11 39 39 H 1.08994 * 110.40976 * 22.36597 * 20 12 11 40 40 H 1.09003 * 110.15639 * 111.86951 * 21 20 12 41 41 H 1.09000 * 110.16003 * 233.55592 * 21 20 12 42 42 H 1.08999 * 110.96800 * 93.86061 * 22 21 20 43 43 H 1.09001 * 110.96931 * 217.58664 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 -0.0040 9 7 1.3256 -2.3880 0.0005 10 6 -0.1559 -2.5727 -0.0005 11 6 -0.4135 -4.0970 0.2250 12 6 0.8799 -4.5061 0.9136 13 7 0.9073 -4.0413 2.3026 14 6 -0.0275 -4.4681 3.1747 15 8 -0.8917 -5.2367 2.8093 16 6 0.0009 -3.9905 4.6037 17 6 1.0060 -4.7486 5.4867 18 6 -0.0595 -4.7058 6.5970 19 6 -1.1090 -4.5971 5.4782 20 6 1.4459 -5.9036 0.7967 21 6 2.9851 -5.6960 0.6892 22 6 3.2024 -4.1535 0.5629 23 6 1.8808 -3.7027 -0.0048 24 1 1.7872 -4.1071 -1.0126 25 1 -0.4850 0.8400 0.0004 26 1 -0.6051 -1.9943 0.8069 27 1 -0.5706 -2.2615 -0.9593 28 1 -1.2733 -4.2586 0.8751 29 1 -0.5371 -4.6196 -0.7236 30 1 1.5983 -3.4264 2.5948 31 1 0.0782 -2.9064 4.6861 32 1 1.2265 -5.7553 5.1318 33 1 1.9031 -4.1746 5.7188 34 1 0.0021 -3.8174 7.2255 35 1 -0.1291 -5.6287 7.1727 36 1 -1.9170 -3.9010 5.7035 37 1 -1.4679 -5.5623 5.1210 38 1 1.2022 -6.4878 1.6841 39 1 1.0633 -6.3950 -0.0978 40 1 3.4784 -6.0728 1.5852 41 1 3.3719 -6.2045 -0.1940 42 1 3.3850 -3.7042 1.5391 43 1 4.0168 -3.9294 -0.1260 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989893164.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:57 Heat of formation + Delta-G solvation = 17.162210 kcal Electronic energy + Delta-G solvation = -23370.897663 eV Core-core repulsion = 20224.430714 eV Total energy + Delta-G solvation = -3146.466949 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 3.71 seconds Orbital eigenvalues (eV) -40.53182 -39.05655 -36.74179 -34.42752 -32.89984 -31.67639 -29.89070 -26.93942 -26.75303 -25.59276 -25.39010 -24.01001 -21.27154 -20.44627 -19.66890 -19.12946 -18.65215 -17.12960 -16.46811 -15.74397 -15.43275 -14.69280 -14.64855 -14.39262 -14.11089 -13.92137 -13.45615 -12.74419 -12.50927 -12.40177 -12.28946 -11.92721 -11.90733 -11.45619 -11.35808 -11.00788 -10.99912 -10.90333 -10.80312 -10.47869 -10.46243 -10.33902 -10.29121 -9.99674 -9.94374 -9.68368 -9.44346 -8.92116 -8.66503 -8.36204 -6.85927 -5.74723 -3.09348 3.14083 3.36796 3.41878 3.43235 3.75589 4.44799 4.59975 4.65030 4.69891 4.84638 4.88347 5.21753 5.24345 5.45897 5.47397 5.62366 5.65762 5.69835 5.75870 5.81139 5.85291 5.85730 5.96590 6.00697 6.02075 6.15246 6.16670 6.29218 6.31621 6.37690 6.44633 6.47442 6.52388 6.72574 6.86675 6.93332 7.29195 7.53312 7.61599 7.78422 8.17260 8.20181 8.82797 9.13001 9.79650 10.49594 11.37340 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015736 B = 0.006601 C = 0.005599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.935245 B = 4240.518802 C = 4999.663683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.004 4.004 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.231 4.231 8 H 0.078 0.922 9 N -0.583 5.583 10 C 0.180 3.820 11 C -0.142 4.142 12 C 0.130 3.870 13 N -0.687 5.687 14 C 0.524 3.476 15 O -0.551 6.551 16 C -0.139 4.139 17 C -0.123 4.123 18 C -0.142 4.142 19 C -0.116 4.116 20 C -0.111 4.111 21 C -0.116 4.116 22 C -0.115 4.115 23 C 0.158 3.842 24 H 0.022 0.978 25 H 0.253 0.747 26 H 0.064 0.936 27 H 0.033 0.967 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.400 0.600 31 H 0.111 0.889 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.098 -10.074 8.572 13.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.201 4.201 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.359 4.359 8 H 0.096 0.904 9 N -0.306 5.306 10 C 0.056 3.944 11 C -0.181 4.181 12 C 0.042 3.958 13 N -0.336 5.336 14 C 0.310 3.690 15 O -0.430 6.430 16 C -0.160 4.160 17 C -0.161 4.161 18 C -0.180 4.180 19 C -0.154 4.154 20 C -0.150 4.150 21 C -0.154 4.154 22 C -0.153 4.153 23 C 0.048 3.952 24 H 0.039 0.961 25 H 0.064 0.936 26 H 0.082 0.918 27 H 0.051 0.949 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.235 0.765 31 H 0.129 0.871 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.111 0.889 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.431 -10.333 8.267 13.455 hybrid contribution 0.792 1.386 -0.023 1.597 sum 3.223 -8.947 8.244 12.586 Atomic orbital electron populations 1.69916 1.04899 1.25229 1.56454 1.24794 0.95606 0.97610 1.02111 0.86251 0.78486 0.83429 0.77866 1.21205 1.21657 1.21216 1.18955 0.90200 0.82329 1.44413 0.90430 1.43641 1.01743 0.99178 1.86084 1.21988 0.83102 0.88741 1.00549 1.22815 0.96927 0.99251 0.99080 1.21550 0.98747 0.93553 0.81922 1.45655 1.30805 1.47804 1.09382 1.20297 0.81077 0.80754 0.86905 1.90612 1.36811 1.36366 1.79222 1.22775 0.99751 1.01705 0.91794 1.22818 0.96833 1.00610 0.95824 1.22858 0.96689 1.02042 0.96373 1.22757 0.95916 1.02118 0.94599 1.21886 0.94976 0.96373 1.01774 1.22811 0.95743 0.95939 1.00932 1.21882 0.97953 0.94485 1.01017 1.20926 0.91617 0.87465 0.95190 0.96077 0.93648 0.91812 0.94890 0.90535 0.91968 0.76501 0.87106 0.89939 0.90897 0.90101 0.91345 0.91285 0.88897 0.91867 0.91273 0.92288 0.92002 0.91671 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.50 10.55 55.49 0.59 -25.92 16 2 C 0.00 -0.12 5.49 -17.43 -0.10 -0.22 16 3 Si 0.91 21.57 29.55 -169.99 -5.02 16.55 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.23 -6.12 10.29 -15.06 -0.15 -6.28 16 8 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 9 N -0.58 -14.20 3.17 -162.33 -0.51 -14.71 16 10 C 0.18 4.40 5.34 -0.76 0.00 4.40 16 11 C -0.14 -2.93 6.09 -25.44 -0.15 -3.08 16 12 C 0.13 2.41 0.41 -130.51 -0.05 2.35 16 13 N -0.69 -12.12 4.52 -46.40 -0.21 -12.33 16 14 C 0.52 9.10 6.74 -10.99 -0.07 9.02 16 15 O -0.55 -11.09 14.04 5.55 0.08 -11.01 16 16 C -0.14 -1.92 4.14 -90.97 -0.38 -2.30 16 17 C -0.12 -1.37 7.64 -25.83 -0.20 -1.57 16 18 C -0.14 -1.43 8.09 -25.83 -0.21 -1.64 16 19 C -0.12 -1.46 7.40 -25.92 -0.19 -1.65 16 20 C -0.11 -1.76 6.16 -26.19 -0.16 -1.92 16 21 C -0.12 -1.62 6.93 -23.54 -0.16 -1.78 16 22 C -0.11 -1.89 6.47 -26.10 -0.17 -2.06 16 23 C 0.16 3.18 2.70 -68.41 -0.18 2.99 16 24 H 0.02 0.46 7.99 -51.93 -0.41 0.04 16 25 H 0.25 7.17 8.31 -40.82 -0.34 6.84 16 26 H 0.06 1.74 7.05 -51.93 -0.37 1.37 16 27 H 0.03 0.88 7.98 -51.93 -0.41 0.47 16 28 H 0.08 1.66 6.27 -51.93 -0.33 1.33 16 29 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 30 H 0.40 6.97 7.61 -40.82 -0.31 6.66 16 31 H 0.11 1.51 8.14 -51.93 -0.42 1.08 16 32 H 0.08 0.95 8.09 -51.93 -0.42 0.53 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.09 1.28 7.45 -51.93 -0.39 0.90 16 38 H 0.06 1.02 7.73 -51.93 -0.40 0.62 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 1.07 7.20 -51.93 -0.37 0.69 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 331.99 15.07 5.00 5.00 Total: -1.00 -29.88 331.99 -9.46 -39.34 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -7.19 Total: 6.79 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -2.19 Total: -3.72 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: -0.14 Total: -52.96 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.08 Total: -11.01 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.88 -9.46 -39.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989893164.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.507 kcal (2) G-P(sol) polarization free energy of solvation -29.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.71 seconds