Wall clock time and date at job start Tue Mar 31 2020 00:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48500 * 109.47093 * 240.00123 * 3 2 1 5 5 H 1.48495 * 109.47002 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47239 * 119.99843 * 3 2 1 7 7 C 1.38815 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99568 * 179.72333 * 7 2 1 9 9 N 1.36929 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.49292 * 127.10670 * 0.02562 * 9 7 2 11 11 C 1.56228 * 106.51426 * 188.64246 * 10 9 7 12 12 C 1.52135 * 100.80710 * 23.44353 * 11 10 9 13 13 N 1.46494 * 111.08421 * 74.61244 * 12 11 10 14 14 C 1.34776 * 120.00353 * 61.01552 * 13 12 11 15 15 O 1.21286 * 119.99558 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00483 * 179.97438 * 14 13 12 17 17 C 1.53777 * 113.61516 * 279.13771 * 16 14 13 18 18 C 1.53949 * 87.01969 * 220.04739 * 17 16 14 19 19 C 1.53774 * 113.61566 * 181.52617 * 16 14 13 20 20 C 1.51226 * 122.12013 * 208.79624 * 12 11 10 21 21 C 1.55689 * 104.60636 * 141.27007 * 20 12 11 22 22 C 1.56282 * 105.93786 * 352.74945 * 21 20 12 23 23 C 1.42708 * 127.10282 * 179.70428 * 9 7 2 24 24 H 1.08996 * 108.17584 * 256.55804 * 23 9 7 25 25 H 0.97000 * 120.00284 * 359.97438 * 1 2 3 26 26 H 1.09004 * 110.04529 * 307.90351 * 10 9 7 27 27 H 1.08996 * 110.05113 * 69.37418 * 10 9 7 28 28 H 1.08993 * 111.15515 * 141.33099 * 11 10 9 29 29 H 1.09009 * 111.14950 * 265.51895 * 11 10 9 30 30 H 0.97004 * 120.00017 * 241.01026 * 13 12 11 31 31 H 1.08997 * 112.84474 * 50.33359 * 16 14 13 32 32 H 1.09001 * 113.61320 * 334.56667 * 17 16 14 33 33 H 1.08999 * 113.61730 * 105.46885 * 17 16 14 34 34 H 1.09003 * 113.53899 * 270.81098 * 18 17 16 35 35 H 1.08997 * 113.67369 * 139.93111 * 18 17 16 36 36 H 1.09001 * 113.62197 * 254.53162 * 19 16 14 37 37 H 1.09000 * 113.61481 * 25.43426 * 19 16 14 38 38 H 1.09002 * 110.40775 * 260.05209 * 20 12 11 39 39 H 1.08994 * 110.40976 * 22.36597 * 20 12 11 40 40 H 1.09003 * 110.15639 * 111.86951 * 21 20 12 41 41 H 1.09000 * 110.16003 * 233.55592 * 21 20 12 42 42 H 1.08999 * 110.96800 * 93.86061 * 22 21 20 43 43 H 1.09001 * 110.96931 * 217.58664 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 -0.0040 9 7 1.3256 -2.3880 0.0005 10 6 -0.1559 -2.5727 -0.0005 11 6 -0.4135 -4.0970 0.2250 12 6 0.8799 -4.5061 0.9136 13 7 0.9073 -4.0413 2.3026 14 6 -0.0275 -4.4681 3.1747 15 8 -0.8917 -5.2367 2.8093 16 6 0.0009 -3.9905 4.6037 17 6 1.0060 -4.7486 5.4867 18 6 -0.0595 -4.7058 6.5970 19 6 -1.1090 -4.5971 5.4782 20 6 1.4459 -5.9036 0.7967 21 6 2.9851 -5.6960 0.6892 22 6 3.2024 -4.1535 0.5629 23 6 1.8808 -3.7027 -0.0048 24 1 1.7872 -4.1071 -1.0126 25 1 -0.4850 0.8400 0.0004 26 1 -0.6051 -1.9943 0.8069 27 1 -0.5706 -2.2615 -0.9593 28 1 -1.2733 -4.2586 0.8751 29 1 -0.5371 -4.6196 -0.7236 30 1 1.5983 -3.4264 2.5948 31 1 0.0782 -2.9064 4.6861 32 1 1.2265 -5.7553 5.1318 33 1 1.9031 -4.1746 5.7188 34 1 0.0021 -3.8174 7.2255 35 1 -0.1291 -5.6287 7.1727 36 1 -1.9170 -3.9010 5.7035 37 1 -1.4679 -5.5623 5.1210 38 1 1.2022 -6.4878 1.6841 39 1 1.0633 -6.3950 -0.0978 40 1 3.4784 -6.0728 1.5852 41 1 3.3719 -6.2045 -0.1940 42 1 3.3850 -3.7042 1.5391 43 1 4.0168 -3.9294 -0.1260 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989893164.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:54 Heat of formation + Delta-G solvation = -0.313068 kcal Electronic energy + Delta-G solvation = -23371.655448 eV Core-core repulsion = 20224.430714 eV Total energy + Delta-G solvation = -3147.224734 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.98989 -40.32400 -38.00059 -36.17158 -34.34358 -33.56133 -31.61303 -28.56138 -28.00894 -26.83839 -26.47908 -25.90622 -22.63418 -22.00231 -21.24210 -20.25054 -20.11730 -18.46546 -18.28494 -17.38115 -16.52931 -16.40923 -16.00358 -15.81776 -15.70798 -15.49815 -14.89710 -14.17298 -14.06481 -13.72913 -13.56070 -13.35437 -13.05868 -13.03663 -12.88073 -12.83530 -12.62055 -12.17365 -12.13982 -12.09345 -11.99444 -11.77693 -11.54824 -11.40809 -11.34447 -11.27051 -10.99683 -10.71442 -10.37398 -9.83300 -8.87301 -7.83559 -5.19564 1.47127 1.49599 1.55810 1.78241 2.39925 2.50849 3.10040 3.36262 3.61197 3.71606 3.73691 3.86914 3.90381 3.94695 4.11381 4.22178 4.33596 4.42068 4.45619 4.57793 4.64032 4.72633 4.81108 4.81893 4.89181 4.95613 4.99515 5.04867 5.07582 5.10443 5.11552 5.21897 5.25299 5.29650 5.48727 5.53988 5.55393 5.60173 5.68045 5.85867 6.17945 6.76217 7.04014 7.43321 7.77062 8.50385 9.28283 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015736 B = 0.006601 C = 0.005599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.935245 B = 4240.518802 C = 4999.663683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.064 4.064 3 Si 0.975 3.025 4 H -0.280 1.280 5 H -0.301 1.301 6 H -0.273 1.273 7 C -0.232 4.232 8 H 0.089 0.911 9 N -0.596 5.596 10 C 0.193 3.807 11 C -0.132 4.132 12 C 0.137 3.863 13 N -0.688 5.688 14 C 0.519 3.481 15 O -0.583 6.583 16 C -0.147 4.147 17 C -0.113 4.113 18 C -0.126 4.126 19 C -0.122 4.122 20 C -0.107 4.107 21 C -0.101 4.101 22 C -0.110 4.110 23 C 0.146 3.854 24 H 0.015 0.985 25 H 0.245 0.755 26 H 0.027 0.973 27 H -0.003 1.003 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.402 0.598 31 H 0.112 0.888 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.550 -11.280 9.980 16.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.257 4.257 3 Si 0.804 3.196 4 H -0.206 1.206 5 H -0.228 1.228 6 H -0.198 1.198 7 C -0.360 4.360 8 H 0.107 0.893 9 N -0.319 5.319 10 C 0.069 3.931 11 C -0.171 4.171 12 C 0.049 3.951 13 N -0.337 5.337 14 C 0.307 3.693 15 O -0.464 6.464 16 C -0.168 4.168 17 C -0.151 4.151 18 C -0.163 4.163 19 C -0.160 4.160 20 C -0.146 4.146 21 C -0.139 4.139 22 C -0.148 4.148 23 C 0.037 3.963 24 H 0.032 0.968 25 H 0.054 0.946 26 H 0.045 0.955 27 H 0.015 0.985 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.237 0.763 31 H 0.130 0.870 32 H 0.099 0.901 33 H 0.108 0.892 34 H 0.115 0.885 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.085 0.915 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.928 -11.571 9.685 15.874 hybrid contribution -0.024 1.746 -0.524 1.823 sum 4.903 -9.826 9.161 14.301 Atomic orbital electron populations 1.70148 1.06486 1.25205 1.58364 1.25606 0.96341 1.00949 1.02844 0.85205 0.77066 0.79065 0.78300 1.20586 1.22789 1.19840 1.19371 0.90874 0.83161 1.42611 0.89293 1.43756 1.01712 1.00470 1.85950 1.21632 0.83547 0.90803 0.97146 1.22657 0.97994 0.96584 0.99866 1.21520 0.96367 0.95191 0.82064 1.45699 1.31071 1.47827 1.09059 1.20958 0.80154 0.80064 0.88173 1.90590 1.37826 1.37896 1.80058 1.22915 1.02145 1.02025 0.89708 1.22813 0.97146 1.00155 0.94985 1.22819 0.94276 1.03574 0.95618 1.22779 0.96374 1.01169 0.95646 1.21879 0.96401 0.94136 1.02135 1.22741 0.94074 0.93919 1.03134 1.21898 0.95780 0.96223 1.00897 1.21158 0.94537 0.85257 0.95392 0.96795 0.94621 0.95460 0.98515 0.91819 0.90728 0.76308 0.87035 0.90145 0.89191 0.88534 0.89789 0.91221 0.90477 0.91924 0.90534 0.89988 0.89895 0.91498 0.91069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.26 10.55 21.65 0.23 -57.03 16 2 C -0.06 -3.58 5.49 84.86 0.47 -3.11 16 3 Si 0.97 44.75 29.55 68.60 2.03 46.78 16 4 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.23 -12.32 10.29 84.04 0.86 -11.46 16 8 H 0.09 4.44 7.83 -2.91 -0.02 4.42 16 9 N -0.60 -29.43 3.17 -667.50 -2.12 -31.55 16 10 C 0.19 9.92 5.34 86.96 0.46 10.38 16 11 C -0.13 -5.59 6.09 31.43 0.19 -5.40 16 12 C 0.14 4.96 0.41 4.45 0.00 4.96 16 13 N -0.69 -23.93 4.52 -419.10 -1.90 -25.83 16 14 C 0.52 17.95 6.74 87.66 0.59 18.54 16 15 O -0.58 -23.67 14.04 -3.05 -0.04 -23.72 16 16 C -0.15 -3.92 4.14 -11.02 -0.05 -3.96 16 17 C -0.11 -2.24 7.64 31.18 0.24 -2.00 16 18 C -0.13 -2.18 8.09 31.18 0.25 -1.93 16 19 C -0.12 -2.94 7.40 31.12 0.23 -2.71 16 20 C -0.11 -3.12 6.16 30.94 0.19 -2.93 16 21 C -0.10 -2.42 6.93 32.66 0.23 -2.19 16 22 C -0.11 -3.31 6.47 31.00 0.20 -3.11 16 23 C 0.15 5.71 2.70 46.67 0.13 5.84 16 24 H 0.01 0.60 7.99 -2.39 -0.02 0.58 16 25 H 0.24 14.48 8.31 -92.71 -0.77 13.71 16 26 H 0.03 1.58 7.05 -2.38 -0.02 1.56 16 27 H 0.00 -0.19 7.98 -2.39 -0.02 -0.21 16 28 H 0.06 2.86 6.27 -2.39 -0.01 2.85 16 29 H 0.07 2.92 8.14 -2.38 -0.02 2.90 16 30 H 0.40 13.68 7.61 -92.71 -0.71 12.97 16 31 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 32 H 0.08 1.65 8.09 -2.39 -0.02 1.63 16 33 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.08 2.12 7.45 -2.39 -0.02 2.10 16 38 H 0.06 1.87 7.73 -2.39 -0.02 1.85 16 39 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.07 2.00 7.20 -2.39 -0.02 1.99 16 43 H 0.07 2.05 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -66.84 331.99 2.48 -64.36 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: 0.28 Total: 26.07 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: 4.00 Total: 0.91 kcal Atomic # 7 Polarization: -110.62 SS G_CDS: -3.78 Total: -114.40 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.04 Total: -23.72 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -66.84 2.48 -64.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989893164.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.044 kcal (2) G-P(sol) polarization free energy of solvation -66.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds