Wall clock time and date at job start Tue Mar 31 2020 00:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86796 * 119.99970 * 2 1 4 4 H 1.48503 * 109.46855 * 240.00181 * 3 2 1 5 5 H 1.48505 * 109.47353 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47094 * 119.99834 * 3 2 1 7 7 C 1.38809 * 119.99919 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99915 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99981 * 359.97438 * 7 2 1 10 10 C 1.47369 * 125.58173 * 359.69450 * 9 7 2 11 11 C 1.54869 * 104.82292 * 155.57177 * 10 9 7 12 12 C 1.54909 * 101.76440 * 37.07442 * 11 10 9 13 13 N 1.46511 * 112.33013 * 86.21339 * 12 11 10 14 14 C 1.34772 * 119.99825 * 64.36213 * 13 12 11 15 15 O 1.21281 * 120.00516 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99644 * 180.02562 * 14 13 12 17 17 C 1.53787 * 113.61319 * 277.49115 * 16 14 13 18 18 C 1.53780 * 87.07973 * 220.01827 * 17 16 14 19 19 C 1.53780 * 87.08377 * 25.43555 * 18 17 16 20 20 C 1.53577 * 109.57360 * 211.68649 * 12 11 10 21 21 C 1.54225 * 106.67394 * 113.30066 * 20 12 11 22 22 C 1.56748 * 104.50837 * 335.24970 * 21 20 12 23 23 C 1.46986 * 125.58149 * 180.02562 * 9 7 2 24 24 H 1.08999 * 111.81251 * 58.79473 * 23 9 7 25 25 H 0.97002 * 119.99904 * 0.02562 * 1 2 3 26 26 H 1.08999 * 110.37244 * 274.40659 * 10 9 7 27 27 H 1.09002 * 110.36771 * 36.73939 * 10 9 7 28 28 H 1.09001 * 110.96700 * 278.95361 * 11 10 9 29 29 H 1.09007 * 110.96777 * 155.19234 * 11 10 9 30 30 H 0.97001 * 119.99528 * 244.34940 * 13 12 11 31 31 H 1.08996 * 112.85228 * 48.79775 * 16 14 13 32 32 H 1.08998 * 113.61038 * 334.57077 * 17 16 14 33 33 H 1.08999 * 113.61238 * 105.47152 * 17 16 14 34 34 H 1.08993 * 113.61837 * 270.88454 * 18 17 16 35 35 H 1.09004 * 113.68978 * 139.99074 * 18 17 16 36 36 H 1.09000 * 113.61445 * 220.01834 * 19 18 17 37 37 H 1.08999 * 113.69607 * 89.12077 * 19 18 17 38 38 H 1.09000 * 110.02341 * 232.60685 * 20 12 11 39 39 H 1.08999 * 110.01985 * 353.95473 * 20 12 11 40 40 H 1.09001 * 110.49447 * 93.73022 * 21 20 12 41 41 H 1.09003 * 110.49473 * 216.25957 * 21 20 12 42 42 H 1.08997 * 111.09886 * 279.18813 * 22 21 20 43 43 H 1.09000 * 111.11340 * 155.42916 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1411 -2.5313 0.0064 11 6 -0.4060 -3.9247 -0.6155 12 6 0.7719 -4.7540 -0.0456 13 7 0.4709 -5.3145 1.2741 14 6 -0.5138 -6.2245 1.4111 15 8 -1.1510 -6.5791 0.4420 16 6 -0.8238 -6.8006 2.7687 17 6 0.1013 -7.9614 3.1711 18 6 -1.1442 -8.6469 3.7573 19 6 -1.9719 -7.8237 2.7562 20 6 1.1768 -5.8356 -1.0579 21 6 2.5916 -5.4714 -1.5524 22 6 2.6981 -3.9232 -1.3321 23 6 1.9332 -3.7264 -0.0005 24 1 2.5780 -3.8784 0.8650 25 1 -0.4850 0.8401 -0.0004 26 1 -0.5213 -2.4930 1.0272 27 1 -0.6014 -1.7515 -0.6003 28 1 -0.3618 -3.8810 -1.7037 29 1 -1.3630 -4.3256 -0.2812 30 1 0.9804 -5.0307 2.0492 31 1 -0.9281 -6.0366 3.5390 32 1 0.5321 -8.4910 2.3214 33 1 0.8432 -7.6884 3.9215 34 1 -1.3355 -8.3885 4.7987 35 1 -1.1800 -9.7209 3.5743 36 1 -2.9035 -7.4396 3.1716 37 1 -2.1087 -8.3146 1.7927 38 1 1.1904 -6.8126 -0.5749 39 1 0.4788 -5.8432 -1.8951 40 1 3.3473 -5.9880 -0.9607 41 1 2.7016 -5.7169 -2.6087 42 1 2.2110 -3.3774 -2.1402 43 1 3.7376 -3.6120 -1.2281 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989893165.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:02 Heat of formation + Delta-G solvation = 5.023045 kcal Electronic energy + Delta-G solvation = -22976.141471 eV Core-core repulsion = 19829.148128 eV Total energy + Delta-G solvation = -3146.993342 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -40.39046 -38.90669 -36.90336 -34.20042 -33.27020 -31.40188 -29.82254 -27.10237 -26.71318 -25.71557 -25.32500 -23.82473 -21.49861 -20.07452 -19.97957 -19.05351 -18.69819 -17.13597 -16.99325 -15.81284 -15.43041 -14.89883 -14.74674 -14.43155 -13.91955 -13.49344 -13.29734 -12.91498 -12.68887 -12.52697 -12.20447 -12.06676 -11.73819 -11.66622 -11.24755 -11.09109 -10.96195 -10.81866 -10.63808 -10.61446 -10.52815 -10.47462 -10.14587 -10.03546 -9.92120 -9.70117 -9.58409 -9.18435 -8.64644 -8.47294 -6.84392 -5.63715 -3.07103 2.93469 3.39659 3.44023 3.45569 3.52852 4.45902 4.47767 4.54578 4.68639 4.73276 4.91149 5.18909 5.28329 5.36094 5.49779 5.52811 5.56518 5.67932 5.68983 5.73602 5.86764 5.88421 5.88938 5.99155 6.03325 6.11025 6.16186 6.30252 6.34663 6.38973 6.44077 6.56725 6.63046 6.80698 6.82241 7.02229 7.18307 7.55891 7.65020 7.87263 7.93961 8.37804 8.61052 9.22228 9.83332 10.47862 11.38647 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023500 B = 0.004979 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.199830 B = 5621.799788 C = 6159.128480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.010 4.010 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.221 4.221 8 H 0.076 0.924 9 N -0.596 5.596 10 C 0.153 3.847 11 C -0.141 4.141 12 C 0.161 3.839 13 N -0.704 5.704 14 C 0.522 3.478 15 O -0.540 6.540 16 C -0.140 4.140 17 C -0.123 4.123 18 C -0.142 4.142 19 C -0.117 4.117 20 C -0.108 4.108 21 C -0.126 4.126 22 C -0.128 4.128 23 C 0.160 3.840 24 H 0.044 0.956 25 H 0.252 0.748 26 H 0.008 0.992 27 H 0.107 0.893 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.398 0.602 31 H 0.110 0.890 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.833 -14.895 4.935 15.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.349 4.349 8 H 0.094 0.906 9 N -0.320 5.320 10 C 0.028 3.972 11 C -0.180 4.180 12 C 0.075 3.925 13 N -0.353 5.353 14 C 0.308 3.692 15 O -0.418 6.418 16 C -0.162 4.162 17 C -0.161 4.161 18 C -0.180 4.180 19 C -0.155 4.155 20 C -0.147 4.147 21 C -0.164 4.164 22 C -0.168 4.168 23 C 0.052 3.948 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.026 0.974 27 H 0.125 0.875 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.232 0.768 31 H 0.128 0.872 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.113 0.887 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.093 0.907 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.310 -14.873 4.243 15.470 hybrid contribution 0.751 1.122 0.533 1.451 sum 1.061 -13.752 4.776 14.596 Atomic orbital electron populations 1.69800 1.04877 1.24807 1.57421 1.24777 0.95660 0.97649 1.02447 0.86179 0.78399 0.83210 0.77846 1.21175 1.21633 1.21303 1.18990 0.90406 0.82359 1.43184 0.90596 1.44535 1.01814 0.99203 1.86455 1.21966 0.84376 0.92963 0.97874 1.23302 0.96697 0.98051 0.99964 1.21610 0.96674 0.92275 0.81970 1.45947 1.36332 1.42465 1.10595 1.20357 0.79531 0.78777 0.90565 1.90657 1.50049 1.60527 1.40529 1.22805 0.99785 0.97710 0.95851 1.22798 0.96531 0.95786 1.00945 1.22829 0.96431 0.99640 0.99080 1.22778 0.96307 0.95952 1.00418 1.22217 0.96543 0.97592 0.98365 1.22700 0.96347 0.97247 1.00085 1.23278 1.00198 0.93647 0.99645 1.21815 0.91713 0.85929 0.95377 0.93876 0.93719 0.97403 0.87488 0.91504 0.91664 0.76767 0.87175 0.89793 0.90834 0.90050 0.91217 0.91221 0.88745 0.92385 0.91293 0.92455 0.92319 0.90672 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.69 10.07 55.49 0.56 -26.13 16 2 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 3 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 7 C -0.22 -5.97 9.99 -15.06 -0.15 -6.12 16 8 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.60 -14.72 3.03 -161.10 -0.49 -15.21 16 10 C 0.15 3.77 5.91 -2.58 -0.02 3.75 16 11 C -0.14 -2.95 5.79 -24.74 -0.14 -3.09 16 12 C 0.16 2.94 0.74 -129.38 -0.10 2.85 16 13 N -0.70 -11.26 5.23 -45.36 -0.24 -11.50 16 14 C 0.52 8.16 6.51 -10.99 -0.07 8.09 16 15 O -0.54 -10.15 13.77 5.56 0.08 -10.07 16 16 C -0.14 -1.64 4.15 -90.95 -0.38 -2.02 16 17 C -0.12 -1.17 7.63 -25.92 -0.20 -1.37 16 18 C -0.14 -1.23 8.08 -25.92 -0.21 -1.44 16 19 C -0.12 -1.28 7.41 -25.92 -0.19 -1.47 16 20 C -0.11 -1.80 5.25 -25.79 -0.14 -1.94 16 21 C -0.13 -1.91 6.88 -24.07 -0.17 -2.08 16 22 C -0.13 -2.33 6.38 -23.75 -0.15 -2.48 16 23 C 0.16 3.21 3.59 -65.58 -0.24 2.97 16 24 H 0.04 0.85 7.98 -51.93 -0.41 0.44 16 25 H 0.25 7.14 8.31 -40.82 -0.34 6.81 16 26 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.11 2.99 5.82 -51.93 -0.30 2.69 16 28 H 0.07 1.40 7.65 -51.93 -0.40 1.00 16 29 H 0.06 1.39 6.82 -51.92 -0.35 1.04 16 30 H 0.40 5.72 8.49 -40.82 -0.35 5.37 16 31 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 1.18 7.43 -51.93 -0.39 0.80 16 38 H 0.06 0.95 7.40 -51.93 -0.38 0.56 16 39 H 0.07 1.20 7.41 -51.93 -0.38 0.81 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.07 1.53 8.09 -51.93 -0.42 1.11 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 331.38 15.07 4.99 4.99 Total: -1.00 -30.30 331.38 -9.52 -39.82 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -7.16 Total: 6.00 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -2.24 Total: -4.71 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: -0.17 Total: -52.84 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.08 Total: -10.07 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.30 -9.52 -39.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989893165.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.844 kcal (2) G-P(sol) polarization free energy of solvation -30.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds