Wall clock time and date at job start Tue Mar 31 2020 00:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86796 * 119.99970 * 2 1 4 4 H 1.48503 * 109.46855 * 240.00181 * 3 2 1 5 5 H 1.48505 * 109.47353 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47094 * 119.99834 * 3 2 1 7 7 C 1.38809 * 119.99919 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99915 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99981 * 359.97438 * 7 2 1 10 10 C 1.47369 * 125.58173 * 359.69450 * 9 7 2 11 11 C 1.54869 * 104.82292 * 155.57177 * 10 9 7 12 12 C 1.54909 * 101.76440 * 37.07442 * 11 10 9 13 13 N 1.46511 * 112.33013 * 86.21339 * 12 11 10 14 14 C 1.34772 * 119.99825 * 64.36213 * 13 12 11 15 15 O 1.21281 * 120.00516 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99644 * 180.02562 * 14 13 12 17 17 C 1.53787 * 113.61319 * 277.49115 * 16 14 13 18 18 C 1.53780 * 87.07973 * 220.01827 * 17 16 14 19 19 C 1.53780 * 87.08377 * 25.43555 * 18 17 16 20 20 C 1.53577 * 109.57360 * 211.68649 * 12 11 10 21 21 C 1.54225 * 106.67394 * 113.30066 * 20 12 11 22 22 C 1.56748 * 104.50837 * 335.24970 * 21 20 12 23 23 C 1.46986 * 125.58149 * 180.02562 * 9 7 2 24 24 H 1.08999 * 111.81251 * 58.79473 * 23 9 7 25 25 H 0.97002 * 119.99904 * 0.02562 * 1 2 3 26 26 H 1.08999 * 110.37244 * 274.40659 * 10 9 7 27 27 H 1.09002 * 110.36771 * 36.73939 * 10 9 7 28 28 H 1.09001 * 110.96700 * 278.95361 * 11 10 9 29 29 H 1.09007 * 110.96777 * 155.19234 * 11 10 9 30 30 H 0.97001 * 119.99528 * 244.34940 * 13 12 11 31 31 H 1.08996 * 112.85228 * 48.79775 * 16 14 13 32 32 H 1.08998 * 113.61038 * 334.57077 * 17 16 14 33 33 H 1.08999 * 113.61238 * 105.47152 * 17 16 14 34 34 H 1.08993 * 113.61837 * 270.88454 * 18 17 16 35 35 H 1.09004 * 113.68978 * 139.99074 * 18 17 16 36 36 H 1.09000 * 113.61445 * 220.01834 * 19 18 17 37 37 H 1.08999 * 113.69607 * 89.12077 * 19 18 17 38 38 H 1.09000 * 110.02341 * 232.60685 * 20 12 11 39 39 H 1.08999 * 110.01985 * 353.95473 * 20 12 11 40 40 H 1.09001 * 110.49447 * 93.73022 * 21 20 12 41 41 H 1.09003 * 110.49473 * 216.25957 * 21 20 12 42 42 H 1.08997 * 111.09886 * 279.18813 * 22 21 20 43 43 H 1.09000 * 111.11340 * 155.42916 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1411 -2.5313 0.0064 11 6 -0.4060 -3.9247 -0.6155 12 6 0.7719 -4.7540 -0.0456 13 7 0.4709 -5.3145 1.2741 14 6 -0.5138 -6.2245 1.4111 15 8 -1.1510 -6.5791 0.4420 16 6 -0.8238 -6.8006 2.7687 17 6 0.1013 -7.9614 3.1711 18 6 -1.1442 -8.6469 3.7573 19 6 -1.9719 -7.8237 2.7562 20 6 1.1768 -5.8356 -1.0579 21 6 2.5916 -5.4714 -1.5524 22 6 2.6981 -3.9232 -1.3321 23 6 1.9332 -3.7264 -0.0005 24 1 2.5780 -3.8784 0.8650 25 1 -0.4850 0.8401 -0.0004 26 1 -0.5213 -2.4930 1.0272 27 1 -0.6014 -1.7515 -0.6003 28 1 -0.3618 -3.8810 -1.7037 29 1 -1.3630 -4.3256 -0.2812 30 1 0.9804 -5.0307 2.0492 31 1 -0.9281 -6.0366 3.5390 32 1 0.5321 -8.4910 2.3214 33 1 0.8432 -7.6884 3.9215 34 1 -1.3355 -8.3885 4.7987 35 1 -1.1800 -9.7209 3.5743 36 1 -2.9035 -7.4396 3.1716 37 1 -2.1087 -8.3146 1.7927 38 1 1.1904 -6.8126 -0.5749 39 1 0.4788 -5.8432 -1.8951 40 1 3.3473 -5.9880 -0.9607 41 1 2.7016 -5.7169 -2.6087 42 1 2.2110 -3.3774 -2.1402 43 1 3.7376 -3.6120 -1.2281 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989893165.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:02 Heat of formation + Delta-G solvation = -13.001985 kcal Electronic energy + Delta-G solvation = -22976.923095 eV Core-core repulsion = 19829.148128 eV Total energy + Delta-G solvation = -3147.774966 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.71068 -40.19298 -38.06608 -35.99692 -34.63941 -33.30724 -31.55403 -28.44213 -28.33166 -26.67766 -26.44544 -25.73690 -22.87126 -21.68296 -21.34562 -20.19512 -20.07047 -18.89602 -18.34461 -17.22547 -16.85231 -16.41979 -15.96407 -15.90473 -15.45287 -15.00734 -14.81077 -14.52948 -13.95611 -13.69900 -13.54061 -13.35498 -13.18496 -12.94210 -12.93353 -12.76705 -12.62736 -12.28365 -12.13437 -12.02562 -11.91828 -11.69077 -11.54950 -11.48166 -11.39171 -11.27186 -11.24628 -10.71417 -10.49568 -9.91031 -8.86541 -7.73471 -5.18689 1.47993 1.50750 1.56954 1.71068 2.26690 2.51805 3.34584 3.37878 3.60293 3.63491 3.72320 3.85183 3.95008 3.95504 3.97180 4.26537 4.34845 4.41401 4.47884 4.58530 4.66448 4.72132 4.77563 4.82949 4.89069 4.90790 4.96752 5.06239 5.07959 5.11879 5.16902 5.21232 5.23200 5.31744 5.47198 5.50280 5.55112 5.63992 5.73113 5.84279 6.30703 6.67153 7.11819 7.35957 7.80450 8.44840 9.27762 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023500 B = 0.004979 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.199830 B = 5621.799788 C = 6159.128480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.069 4.069 3 Si 0.978 3.022 4 H -0.277 1.277 5 H -0.299 1.299 6 H -0.277 1.277 7 C -0.226 4.226 8 H 0.085 0.915 9 N -0.612 5.612 10 C 0.164 3.836 11 C -0.129 4.129 12 C 0.170 3.830 13 N -0.702 5.702 14 C 0.518 3.482 15 O -0.575 6.575 16 C -0.143 4.143 17 C -0.115 4.115 18 C -0.127 4.127 19 C -0.124 4.124 20 C -0.102 4.102 21 C -0.110 4.110 22 C -0.124 4.124 23 C 0.153 3.847 24 H 0.056 0.944 25 H 0.244 0.756 26 H -0.018 1.018 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.408 0.592 31 H 0.124 0.876 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.048 0.952 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.746 -16.648 6.013 17.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.261 4.261 3 Si 0.807 3.193 4 H -0.203 1.203 5 H -0.225 1.225 6 H -0.203 1.203 7 C -0.355 4.355 8 H 0.103 0.897 9 N -0.336 5.336 10 C 0.038 3.962 11 C -0.169 4.169 12 C 0.083 3.917 13 N -0.352 5.352 14 C 0.306 3.694 15 O -0.455 6.455 16 C -0.164 4.164 17 C -0.153 4.153 18 C -0.165 4.165 19 C -0.162 4.162 20 C -0.141 4.141 21 C -0.148 4.148 22 C -0.164 4.164 23 C 0.046 3.954 24 H 0.073 0.927 25 H 0.054 0.946 26 H 0.000 1.000 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.243 0.757 31 H 0.142 0.858 32 H 0.095 0.905 33 H 0.112 0.888 34 H 0.118 0.882 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.067 0.933 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.261 -16.663 5.338 17.643 hybrid contribution 0.120 1.652 0.195 1.668 sum 2.381 -15.011 5.533 16.174 Atomic orbital electron populations 1.70065 1.06352 1.24823 1.59024 1.25597 0.96444 1.00933 1.03099 0.85155 0.77038 0.78956 0.78202 1.20335 1.22512 1.20325 1.19383 0.91021 0.83341 1.41785 0.89677 1.44723 1.01839 1.00594 1.86418 1.21608 0.84746 0.93972 0.95832 1.23102 0.97766 0.96482 0.99501 1.21432 0.94364 0.92365 0.83574 1.45933 1.36842 1.42441 1.10027 1.21101 0.78481 0.77965 0.91813 1.90641 1.51059 1.61618 1.42161 1.22958 1.01267 0.98571 0.93563 1.22799 0.97041 0.94323 1.01153 1.22801 0.94583 0.99850 0.99238 1.22805 0.96706 0.96299 1.00405 1.22148 0.97353 0.97148 0.97448 1.22634 0.95763 0.94585 1.01779 1.23145 0.99942 0.95963 0.97367 1.22076 0.92525 0.84025 0.96793 0.92675 0.94607 1.00005 0.91140 0.91918 0.92392 0.75676 0.85764 0.90534 0.88829 0.88212 0.90207 0.90857 0.90766 0.91573 0.92299 0.89964 0.90431 0.93293 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.29 10.07 21.65 0.22 -57.07 16 2 C -0.07 -3.86 5.49 84.86 0.47 -3.39 16 3 Si 0.98 45.34 29.55 68.60 2.03 47.37 16 4 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 5 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.23 -12.29 9.99 84.03 0.84 -11.45 16 8 H 0.09 4.37 7.83 -2.91 -0.02 4.34 16 9 N -0.61 -30.62 3.03 -663.62 -2.01 -32.63 16 10 C 0.16 8.42 5.91 86.85 0.51 8.94 16 11 C -0.13 -5.55 5.79 31.88 0.18 -5.37 16 12 C 0.17 6.09 0.74 5.18 0.00 6.10 16 13 N -0.70 -21.75 5.23 -415.81 -2.18 -23.92 16 14 C 0.52 15.79 6.51 87.66 0.57 16.36 16 15 O -0.58 -21.59 13.77 -3.03 -0.04 -21.63 16 16 C -0.14 -3.09 4.15 -11.01 -0.05 -3.13 16 17 C -0.12 -1.87 7.63 31.12 0.24 -1.63 16 18 C -0.13 -1.81 8.08 31.12 0.25 -1.56 16 19 C -0.12 -2.55 7.41 31.12 0.23 -2.32 16 20 C -0.10 -3.22 5.25 31.20 0.16 -3.05 16 21 C -0.11 -3.00 6.88 32.32 0.22 -2.78 16 22 C -0.12 -4.34 6.38 32.53 0.21 -4.13 16 23 C 0.15 5.98 3.59 46.25 0.17 6.14 16 24 H 0.06 2.06 7.98 -2.39 -0.02 2.05 16 25 H 0.24 14.41 8.31 -92.71 -0.77 13.64 16 26 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 27 H 0.07 4.17 5.82 -2.39 -0.01 4.16 16 28 H 0.06 2.72 7.65 -2.39 -0.02 2.70 16 29 H 0.06 2.56 6.82 -2.38 -0.02 2.54 16 30 H 0.41 11.07 8.49 -92.71 -0.79 10.28 16 31 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.08 1.38 8.09 -2.39 -0.02 1.36 16 33 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.07 1.83 7.43 -2.39 -0.02 1.82 16 38 H 0.07 2.00 7.40 -2.39 -0.02 1.98 16 39 H 0.06 1.98 7.41 -2.39 -0.02 1.96 16 40 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.05 1.96 8.09 -2.39 -0.02 1.94 16 43 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -67.42 331.38 2.23 -65.18 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: 0.21 Total: 23.99 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: 4.01 Total: -1.29 kcal Atomic # 7 Polarization: -109.65 SS G_CDS: -3.97 Total: -113.62 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.04 Total: -21.63 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -67.42 2.23 -65.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989893165.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.181 kcal (2) G-P(sol) polarization free energy of solvation -67.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds