Wall clock time and date at job start Tue Mar 31 2020 00:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99649 * 2 1 4 4 H 1.48494 * 109.47154 * 270.00284 * 3 2 1 5 5 H 1.48505 * 109.47130 * 30.00193 * 3 2 1 6 6 H 1.48498 * 109.47181 * 149.99904 * 3 2 1 7 7 C 1.38810 * 120.00277 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99483 * 179.97438 * 7 2 1 9 9 N 1.36928 * 120.00158 * 359.97438 * 7 2 1 10 10 C 1.47412 * 125.56208 * 0.02562 * 9 7 2 11 11 C 1.54867 * 104.80444 * 204.61375 * 10 9 7 12 12 C 1.54921 * 101.79690 * 322.97629 * 11 10 9 13 13 N 1.46501 * 112.33011 * 273.77089 * 12 11 10 14 14 C 1.34778 * 119.99788 * 298.98370 * 13 12 11 15 15 O 1.21282 * 120.00283 * 0.02562 * 14 13 12 16 16 C 1.50705 * 119.99840 * 179.97438 * 14 13 12 17 17 C 1.52998 * 109.47064 * 179.97438 * 16 14 13 18 18 C 1.52996 * 117.50003 * 243.62337 * 17 16 14 19 19 C 1.52992 * 60.00118 * 252.51246 * 18 17 16 20 20 C 1.53577 * 109.08846 * 148.09938 * 12 11 10 21 21 C 1.54223 * 106.67491 * 246.92113 * 20 12 11 22 22 C 1.54760 * 104.15540 * 24.94366 * 21 20 12 23 23 C 1.46985 * 125.58055 * 180.02562 * 9 7 2 24 24 H 1.08994 * 111.80781 * 300.98842 * 23 9 7 25 25 H 0.96994 * 120.00568 * 359.97438 * 1 2 3 26 26 H 1.09002 * 110.35551 * 85.79643 * 10 9 7 27 27 H 1.09006 * 110.40636 * 323.45442 * 10 9 7 28 28 H 1.09002 * 110.97172 * 204.83716 * 11 10 9 29 29 H 1.09003 * 110.96938 * 81.11228 * 11 10 9 30 30 H 0.96996 * 120.00239 * 118.98877 * 13 12 11 31 31 H 1.08994 * 109.47452 * 300.00911 * 16 14 13 32 32 H 1.09001 * 109.46624 * 60.00251 * 16 14 13 33 33 H 1.09001 * 115.55032 * 29.33279 * 17 16 14 34 34 H 1.09008 * 117.50099 * 0.02562 * 18 17 16 35 35 H 1.09007 * 117.49920 * 145.02371 * 18 17 16 36 36 H 1.09005 * 117.50102 * 252.50489 * 19 18 17 37 37 H 1.09003 * 117.49932 * 107.48842 * 19 18 17 38 38 H 1.08996 * 110.02430 * 6.22504 * 20 12 11 39 39 H 1.09004 * 110.01570 * 127.62103 * 20 12 11 40 40 H 1.09002 * 110.49357 * 266.27534 * 21 20 12 41 41 H 1.09000 * 110.60739 * 143.67299 * 21 20 12 42 42 H 1.09003 * 110.66849 * 203.75512 * 22 21 20 43 43 H 1.09001 * 110.80903 * 80.69086 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4404 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 7 1.3258 -2.3880 -0.0005 10 6 -0.1414 -2.5310 -0.0005 11 6 -0.4032 -3.9242 0.6231 12 6 0.7724 -4.7540 0.0493 13 7 0.4661 -5.3158 -1.2686 14 6 -0.5624 -6.1749 -1.4124 15 8 -1.2347 -6.4824 -0.4509 16 6 -0.8779 -6.7524 -2.7682 17 6 -2.0810 -7.6908 -2.6554 18 6 -1.8549 -9.1706 -2.9712 19 6 -2.6335 -8.2898 -3.9502 20 6 1.1755 -5.8272 1.0713 21 6 2.5890 -5.4585 1.5659 22 6 2.6835 -3.9308 1.3373 23 6 1.9335 -3.7263 -0.0005 24 1 2.5753 -3.8795 -0.8680 25 1 -0.4851 0.8399 0.0004 26 1 -0.5260 -2.4932 -1.0197 27 1 -0.5993 -1.7509 0.6078 28 1 -1.3615 -4.3254 0.2932 29 1 -0.3549 -3.8798 1.7111 30 1 1.0036 -5.0697 -2.0376 31 1 -1.1103 -5.9446 -3.4621 32 1 -0.0160 -7.3098 -3.1350 33 1 -2.7951 -7.4471 -1.8687 34 1 -0.8487 -9.4758 -3.2590 35 1 -2.4201 -9.9009 -2.3922 36 1 -3.7111 -8.4406 -4.0155 37 1 -2.1399 -8.0153 -4.8825 38 1 0.4762 -5.8278 1.9073 39 1 1.1906 -6.8080 0.5960 40 1 3.3463 -5.9796 0.9800 41 1 2.6985 -5.6935 2.6246 42 1 3.7240 -3.6189 1.2468 43 1 2.1890 -3.3875 2.1425 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989902781.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:14 Heat of formation + Delta-G solvation = 8.596772 kcal Electronic energy + Delta-G solvation = -22691.602686 eV Core-core repulsion = 19544.764312 eV Total energy + Delta-G solvation = -3146.838374 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 2.86 seconds Orbital eigenvalues (eV) -40.17508 -38.43752 -36.87277 -34.22925 -33.35398 -31.46434 -30.19783 -28.93219 -26.70574 -25.79827 -23.82044 -22.48646 -21.79657 -20.45353 -19.94939 -19.36983 -18.73693 -17.03936 -16.92113 -15.70987 -15.55422 -15.00869 -14.82577 -14.16039 -14.01512 -13.76193 -13.52910 -13.02643 -12.85343 -12.46976 -12.14701 -11.76108 -11.68676 -11.59092 -11.45383 -11.14327 -10.97817 -10.82984 -10.65209 -10.51891 -10.43346 -10.13103 -10.08666 -10.04079 -9.91959 -9.70795 -9.59718 -9.23210 -8.64909 -8.48526 -6.84620 -5.63880 -3.07129 2.96405 3.38916 3.42404 3.45025 3.46467 3.77247 4.47721 4.62125 4.74459 4.83900 4.93788 5.12770 5.18617 5.33235 5.40744 5.51062 5.52507 5.54069 5.64694 5.68656 5.78208 5.86847 5.89327 5.99153 6.03065 6.09408 6.17148 6.24445 6.32853 6.38951 6.44719 6.56733 6.62910 6.81139 6.82812 7.02697 7.17982 7.56460 7.65440 7.86485 7.92450 8.37634 8.59605 9.22180 9.83267 10.47746 11.38617 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023141 B = 0.004700 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.669811 B = 5955.544079 C = 6685.901907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.010 4.010 3 Si 0.912 3.088 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.221 4.221 8 H 0.077 0.923 9 N -0.596 5.596 10 C 0.153 3.847 11 C -0.142 4.142 12 C 0.160 3.840 13 N -0.707 5.707 14 C 0.515 3.485 15 O -0.538 6.538 16 C -0.112 4.112 17 C -0.135 4.135 18 C -0.180 4.180 19 C -0.183 4.183 20 C -0.110 4.110 21 C -0.124 4.124 22 C -0.129 4.129 23 C 0.161 3.839 24 H 0.045 0.955 25 H 0.251 0.749 26 H 0.008 0.992 27 H 0.107 0.893 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.398 0.602 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.119 0.881 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.088 -14.835 -4.787 15.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.206 4.206 3 Si 0.743 3.257 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.349 4.349 8 H 0.095 0.905 9 N -0.320 5.320 10 C 0.028 3.972 11 C -0.181 4.181 12 C 0.074 3.926 13 N -0.357 5.357 14 C 0.301 3.699 15 O -0.415 6.415 16 C -0.152 4.152 17 C -0.153 4.153 18 C -0.217 4.217 19 C -0.220 4.220 20 C -0.149 4.149 21 C -0.163 4.163 22 C -0.169 4.169 23 C 0.053 3.947 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.026 0.974 27 H 0.125 0.875 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.232 0.768 31 H 0.114 0.886 32 H 0.108 0.892 33 H 0.137 0.863 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.454 -14.789 -4.097 15.353 hybrid contribution 0.765 0.976 -0.547 1.355 sum 0.311 -13.813 -4.645 14.577 Atomic orbital electron populations 1.69808 1.04875 1.24694 1.57494 1.24776 0.95658 0.97645 1.02476 0.86105 0.78550 0.83531 0.77498 1.21734 1.21708 1.20717 1.19036 0.90438 0.82356 1.43056 0.90545 1.44543 1.01831 0.99188 1.86467 1.21971 0.84309 0.92990 0.97884 1.23326 0.96923 0.97965 0.99908 1.21614 0.96812 0.92260 0.81927 1.45910 1.32766 1.45914 1.11106 1.20425 0.80025 0.78728 0.90756 1.90660 1.49522 1.60169 1.41111 1.21235 0.98388 0.99787 0.95819 1.22047 0.99790 0.93874 0.99619 1.23011 1.01481 0.93793 1.03392 1.22990 1.00092 1.04843 0.94072 1.22252 0.96633 0.97657 0.98336 1.22362 0.96404 0.97341 1.00163 1.22919 1.00345 0.93922 0.99684 1.21791 0.91722 0.85938 0.95236 0.93716 0.93772 0.97376 0.87541 0.91360 0.91556 0.76780 0.88581 0.89201 0.86338 0.89005 0.88925 0.88814 0.88869 0.91254 0.92438 0.92416 0.92283 0.92422 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.64 10.07 55.49 0.56 -26.09 16 2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 3 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.22 -5.94 10.01 -15.06 -0.15 -6.09 16 8 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.60 -14.67 3.03 -161.12 -0.49 -15.16 16 10 C 0.15 3.76 5.90 -2.56 -0.02 3.75 16 11 C -0.14 -2.95 5.72 -24.73 -0.14 -3.09 16 12 C 0.16 2.89 0.75 -129.37 -0.10 2.79 16 13 N -0.71 -11.04 5.23 -45.35 -0.24 -11.28 16 14 C 0.51 7.88 7.05 -10.98 -0.08 7.80 16 15 O -0.54 -9.96 13.42 5.56 0.07 -9.89 16 16 C -0.11 -1.27 5.98 -27.88 -0.17 -1.43 16 17 C -0.13 -1.54 5.41 -90.62 -0.49 -2.03 16 18 C -0.18 -1.73 10.18 -26.74 -0.27 -2.01 16 19 C -0.18 -1.67 10.25 -26.74 -0.27 -1.94 16 20 C -0.11 -1.81 5.34 -25.79 -0.14 -1.94 16 21 C -0.12 -1.88 6.84 -25.16 -0.17 -2.05 16 22 C -0.13 -2.34 6.21 -24.89 -0.15 -2.49 16 23 C 0.16 3.21 3.67 -65.63 -0.24 2.97 16 24 H 0.05 0.87 7.96 -51.93 -0.41 0.46 16 25 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 26 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 27 H 0.11 2.97 5.83 -51.93 -0.30 2.67 16 28 H 0.07 1.45 6.53 -51.93 -0.34 1.11 16 29 H 0.07 1.38 7.62 -51.93 -0.40 0.99 16 30 H 0.40 5.44 8.48 -40.82 -0.35 5.10 16 31 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.09 0.83 7.87 -51.93 -0.41 0.42 16 33 H 0.12 1.60 7.30 -51.93 -0.38 1.23 16 34 H 0.09 0.80 8.03 -51.92 -0.42 0.38 16 35 H 0.09 0.86 8.14 -51.92 -0.42 0.44 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 1.19 7.37 -51.93 -0.38 0.81 16 39 H 0.06 0.92 7.66 -51.93 -0.40 0.53 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.07 1.51 8.09 -51.93 -0.42 1.09 16 LS Contribution 335.44 15.07 5.06 5.06 Total: -1.00 -30.41 335.44 -9.68 -40.09 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -7.13 Total: 6.62 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -2.49 Total: -6.14 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: -0.17 Total: -52.52 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.07 Total: -9.89 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.41 -9.68 -40.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989902781.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.687 kcal (2) G-P(sol) polarization free energy of solvation -30.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.86 seconds