Wall clock time and date at job start Tue Mar 31 2020 00:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99649 * 2 1 4 4 H 1.48494 * 109.47154 * 270.00284 * 3 2 1 5 5 H 1.48505 * 109.47130 * 30.00193 * 3 2 1 6 6 H 1.48498 * 109.47181 * 149.99904 * 3 2 1 7 7 C 1.38810 * 120.00277 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99483 * 179.97438 * 7 2 1 9 9 N 1.36928 * 120.00158 * 359.97438 * 7 2 1 10 10 C 1.47412 * 125.56208 * 0.02562 * 9 7 2 11 11 C 1.54867 * 104.80444 * 204.61375 * 10 9 7 12 12 C 1.54921 * 101.79690 * 322.97629 * 11 10 9 13 13 N 1.46501 * 112.33011 * 273.77089 * 12 11 10 14 14 C 1.34778 * 119.99788 * 298.98370 * 13 12 11 15 15 O 1.21282 * 120.00283 * 0.02562 * 14 13 12 16 16 C 1.50705 * 119.99840 * 179.97438 * 14 13 12 17 17 C 1.52998 * 109.47064 * 179.97438 * 16 14 13 18 18 C 1.52996 * 117.50003 * 243.62337 * 17 16 14 19 19 C 1.52992 * 60.00118 * 252.51246 * 18 17 16 20 20 C 1.53577 * 109.08846 * 148.09938 * 12 11 10 21 21 C 1.54223 * 106.67491 * 246.92113 * 20 12 11 22 22 C 1.54760 * 104.15540 * 24.94366 * 21 20 12 23 23 C 1.46985 * 125.58055 * 180.02562 * 9 7 2 24 24 H 1.08994 * 111.80781 * 300.98842 * 23 9 7 25 25 H 0.96994 * 120.00568 * 359.97438 * 1 2 3 26 26 H 1.09002 * 110.35551 * 85.79643 * 10 9 7 27 27 H 1.09006 * 110.40636 * 323.45442 * 10 9 7 28 28 H 1.09002 * 110.97172 * 204.83716 * 11 10 9 29 29 H 1.09003 * 110.96938 * 81.11228 * 11 10 9 30 30 H 0.96996 * 120.00239 * 118.98877 * 13 12 11 31 31 H 1.08994 * 109.47452 * 300.00911 * 16 14 13 32 32 H 1.09001 * 109.46624 * 60.00251 * 16 14 13 33 33 H 1.09001 * 115.55032 * 29.33279 * 17 16 14 34 34 H 1.09008 * 117.50099 * 0.02562 * 18 17 16 35 35 H 1.09007 * 117.49920 * 145.02371 * 18 17 16 36 36 H 1.09005 * 117.50102 * 252.50489 * 19 18 17 37 37 H 1.09003 * 117.49932 * 107.48842 * 19 18 17 38 38 H 1.08996 * 110.02430 * 6.22504 * 20 12 11 39 39 H 1.09004 * 110.01570 * 127.62103 * 20 12 11 40 40 H 1.09002 * 110.49357 * 266.27534 * 21 20 12 41 41 H 1.09000 * 110.60739 * 143.67299 * 21 20 12 42 42 H 1.09003 * 110.66849 * 203.75512 * 22 21 20 43 43 H 1.09001 * 110.80903 * 80.69086 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4404 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 7 1.3258 -2.3880 -0.0005 10 6 -0.1414 -2.5310 -0.0005 11 6 -0.4032 -3.9242 0.6231 12 6 0.7724 -4.7540 0.0493 13 7 0.4661 -5.3158 -1.2686 14 6 -0.5624 -6.1749 -1.4124 15 8 -1.2347 -6.4824 -0.4509 16 6 -0.8779 -6.7524 -2.7682 17 6 -2.0810 -7.6908 -2.6554 18 6 -1.8549 -9.1706 -2.9712 19 6 -2.6335 -8.2898 -3.9502 20 6 1.1755 -5.8272 1.0713 21 6 2.5890 -5.4585 1.5659 22 6 2.6835 -3.9308 1.3373 23 6 1.9335 -3.7263 -0.0005 24 1 2.5753 -3.8795 -0.8680 25 1 -0.4851 0.8399 0.0004 26 1 -0.5260 -2.4932 -1.0197 27 1 -0.5993 -1.7509 0.6078 28 1 -1.3615 -4.3254 0.2932 29 1 -0.3549 -3.8798 1.7111 30 1 1.0036 -5.0697 -2.0376 31 1 -1.1103 -5.9446 -3.4621 32 1 -0.0160 -7.3098 -3.1350 33 1 -2.7951 -7.4471 -1.8687 34 1 -0.8487 -9.4758 -3.2590 35 1 -2.4201 -9.9009 -2.3922 36 1 -3.7111 -8.4406 -4.0155 37 1 -2.1399 -8.0153 -4.8825 38 1 0.4762 -5.8278 1.9073 39 1 1.1906 -6.8080 0.5960 40 1 3.3463 -5.9796 0.9800 41 1 2.6985 -5.6935 2.6246 42 1 3.7240 -3.6189 1.2468 43 1 2.1890 -3.3875 2.1425 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989902781.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:11 Heat of formation + Delta-G solvation = -9.332374 kcal Electronic energy + Delta-G solvation = -22692.380153 eV Core-core repulsion = 19544.764312 eV Total energy + Delta-G solvation = -3147.615840 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.58346 -39.74881 -37.82521 -36.02042 -34.69345 -33.33353 -31.75839 -30.14753 -28.41639 -27.28656 -25.72359 -23.22002 -23.06369 -21.85876 -21.43050 -20.64062 -20.16987 -18.88723 -18.20019 -17.15379 -16.84283 -16.57806 -16.13491 -15.69903 -15.24952 -15.06974 -14.87001 -14.58935 -14.33958 -13.83684 -13.69774 -13.35112 -13.08490 -12.90098 -12.81475 -12.64169 -12.36729 -12.29978 -12.26965 -12.02350 -11.89228 -11.69340 -11.56405 -11.45803 -11.25229 -11.23168 -10.88315 -10.72028 -10.55844 -9.89173 -8.86088 -7.73187 -5.18155 1.48256 1.49558 1.58219 1.76368 2.23830 2.51864 2.97351 3.36093 3.39010 3.65336 3.81445 3.83565 3.96908 3.98395 4.09887 4.21889 4.37182 4.42013 4.47658 4.56373 4.59832 4.67125 4.70419 4.81379 4.83098 4.84224 4.92620 4.98888 5.07689 5.09620 5.18646 5.23697 5.30682 5.32847 5.39411 5.48592 5.52089 5.65319 5.74467 5.85543 6.31192 6.68919 7.12394 7.38712 7.81048 8.45408 9.28292 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023141 B = 0.004700 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.669811 B = 5955.544079 C = 6685.901907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.069 4.069 3 Si 0.977 3.023 4 H -0.288 1.288 5 H -0.299 1.299 6 H -0.267 1.267 7 C -0.225 4.225 8 H 0.086 0.914 9 N -0.612 5.612 10 C 0.164 3.836 11 C -0.130 4.130 12 C 0.170 3.830 13 N -0.705 5.705 14 C 0.510 3.490 15 O -0.573 6.573 16 C -0.101 4.101 17 C -0.160 4.160 18 C -0.175 4.175 19 C -0.168 4.168 20 C -0.104 4.104 21 C -0.109 4.109 22 C -0.125 4.125 23 C 0.154 3.846 24 H 0.059 0.941 25 H 0.244 0.756 26 H -0.018 1.018 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.409 0.591 31 H 0.108 0.892 32 H 0.120 0.880 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.110 0.890 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.091 -16.714 -5.892 17.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.261 4.261 3 Si 0.806 3.194 4 H -0.215 1.215 5 H -0.226 1.226 6 H -0.192 1.192 7 C -0.354 4.354 8 H 0.104 0.896 9 N -0.336 5.336 10 C 0.039 3.961 11 C -0.170 4.170 12 C 0.082 3.918 13 N -0.356 5.356 14 C 0.299 3.701 15 O -0.453 6.453 16 C -0.140 4.140 17 C -0.179 4.179 18 C -0.212 4.212 19 C -0.204 4.204 20 C -0.143 4.143 21 C -0.147 4.147 22 C -0.165 4.165 23 C 0.047 3.953 24 H 0.077 0.923 25 H 0.054 0.946 26 H 0.000 1.000 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.245 0.755 31 H 0.126 0.874 32 H 0.138 0.862 33 H 0.106 0.894 34 H 0.125 0.875 35 H 0.110 0.890 36 H 0.116 0.884 37 H 0.128 0.872 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.588 -16.706 -5.221 17.574 hybrid contribution 0.100 1.534 -0.206 1.551 sum 1.687 -15.171 -5.426 16.201 Atomic orbital electron populations 1.70071 1.06352 1.24727 1.59127 1.25592 0.96438 1.00918 1.03182 0.85089 0.77665 0.79343 0.77317 1.21506 1.22585 1.19217 1.19424 0.91038 0.83349 1.41572 0.89640 1.44732 1.01852 1.00611 1.86417 1.21609 0.84690 0.94012 0.95828 1.23122 0.98052 0.96391 0.99393 1.21423 0.94400 0.92329 0.83610 1.45883 1.33327 1.45834 1.10547 1.21178 0.78988 0.77950 0.92006 1.90648 1.50513 1.61345 1.42769 1.21235 0.99435 1.00225 0.93147 1.21947 0.99919 0.95418 1.00613 1.23112 1.02413 0.92554 1.03149 1.23081 1.00576 1.03114 0.93672 1.22180 0.97373 0.97318 0.97394 1.22301 0.95899 0.94703 1.01819 1.22785 1.00058 0.96216 0.97425 1.22059 0.92574 0.83988 0.96674 0.92349 0.94638 0.99980 0.91284 0.92103 0.92068 0.75460 0.87413 0.86233 0.89362 0.87530 0.89001 0.88409 0.87157 0.92337 0.91438 0.89840 0.90477 0.91516 0.93420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.29 10.07 21.65 0.22 -57.07 16 2 C -0.07 -3.89 5.49 84.86 0.47 -3.42 16 3 Si 0.98 45.34 29.55 68.60 2.03 47.36 16 4 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 5 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.22 -12.18 10.01 84.03 0.84 -11.34 16 8 H 0.09 4.38 7.83 -2.91 -0.02 4.35 16 9 N -0.61 -30.49 3.03 -663.67 -2.01 -32.50 16 10 C 0.16 8.41 5.90 86.84 0.51 8.92 16 11 C -0.13 -5.57 5.72 31.89 0.18 -5.38 16 12 C 0.17 5.98 0.75 5.19 0.00 5.99 16 13 N -0.70 -21.05 5.23 -415.79 -2.18 -23.23 16 14 C 0.51 15.08 7.05 87.66 0.62 15.70 16 15 O -0.57 -21.24 13.42 -3.03 -0.04 -21.28 16 16 C -0.10 -2.06 5.98 29.85 0.18 -1.88 16 17 C -0.16 -3.45 5.41 -10.80 -0.06 -3.51 16 18 C -0.18 -2.98 10.18 30.59 0.31 -2.67 16 19 C -0.17 -2.65 10.25 30.59 0.31 -2.34 16 20 C -0.10 -3.21 5.34 31.20 0.17 -3.04 16 21 C -0.11 -2.94 6.84 31.61 0.22 -2.73 16 22 C -0.12 -4.32 6.21 31.78 0.20 -4.13 16 23 C 0.15 5.95 3.67 46.22 0.17 6.12 16 24 H 0.06 2.14 7.96 -2.39 -0.02 2.12 16 25 H 0.24 14.37 8.31 -92.71 -0.77 13.60 16 26 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 27 H 0.07 4.09 5.83 -2.38 -0.01 4.07 16 28 H 0.06 2.68 6.53 -2.39 -0.02 2.66 16 29 H 0.06 2.64 7.62 -2.39 -0.02 2.63 16 30 H 0.41 10.36 8.48 -92.71 -0.79 9.57 16 31 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.12 1.74 7.87 -2.39 -0.02 1.73 16 33 H 0.09 2.44 7.30 -2.39 -0.02 2.43 16 34 H 0.11 1.50 8.03 -2.38 -0.02 1.48 16 35 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 36 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.06 1.94 7.37 -2.39 -0.02 1.93 16 39 H 0.07 1.98 7.66 -2.38 -0.02 1.96 16 40 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.08 1.85 8.14 -2.39 -0.02 1.84 16 42 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.05 1.90 8.09 -2.39 -0.02 1.89 16 Total: -1.00 -68.07 335.44 2.34 -65.72 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: 0.21 Total: 24.70 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: 4.12 Total: -3.71 kcal Atomic # 7 Polarization: -108.84 SS G_CDS: -3.97 Total: -112.80 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.04 Total: -21.28 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -68.07 2.34 -65.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989902781.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.389 kcal (2) G-P(sol) polarization free energy of solvation -68.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds