Wall clock time and date at job start Tue Mar 31 2020 00:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00121 * 2 1 4 4 H 1.48496 * 109.47485 * 270.00466 * 3 2 1 5 5 H 1.48506 * 109.46994 * 30.00646 * 3 2 1 6 6 H 1.48504 * 109.46746 * 150.00236 * 3 2 1 7 7 C 1.38813 * 119.99688 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99937 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00356 * 359.97438 * 7 2 1 10 10 C 1.49298 * 127.10106 * 359.97438 * 9 7 2 11 11 C 1.56228 * 106.50724 * 188.65320 * 10 9 7 12 12 C 1.52133 * 100.81393 * 23.45069 * 11 10 9 13 13 N 1.46507 * 111.09972 * 73.97410 * 12 11 10 14 14 C 1.34776 * 119.99366 * 61.01598 * 13 12 11 15 15 O 1.21281 * 120.00282 * 0.02562 * 14 13 12 16 16 C 1.50702 * 119.99492 * 180.02562 * 14 13 12 17 17 C 1.53006 * 109.47124 * 180.02562 * 16 14 13 18 18 C 1.53000 * 117.49776 * 174.99774 * 17 16 14 19 19 C 1.52997 * 117.49537 * 243.62228 * 17 16 14 20 20 C 1.51234 * 122.09212 * 208.15456 * 12 11 10 21 21 C 1.56590 * 104.17389 * 141.03905 * 20 12 11 22 22 C 1.56283 * 106.07352 * 353.42845 * 21 20 12 23 23 C 1.42697 * 127.10548 * 179.97438 * 9 7 2 24 24 H 1.08994 * 108.15567 * 256.51037 * 23 9 7 25 25 H 0.97001 * 119.99775 * 359.97438 * 1 2 3 26 26 H 1.09002 * 110.05206 * 69.39204 * 10 9 7 27 27 H 1.08998 * 110.05190 * 307.91652 * 10 9 7 28 28 H 1.09000 * 111.15050 * 265.55676 * 11 10 9 29 29 H 1.09005 * 111.14506 * 141.33413 * 11 10 9 30 30 H 0.96994 * 119.99899 * 241.02092 * 13 12 11 31 31 H 1.08997 * 109.47456 * 60.00162 * 16 14 13 32 32 H 1.09003 * 109.47019 * 299.99582 * 16 14 13 33 33 H 1.09002 * 115.56020 * 29.30357 * 17 16 14 34 34 H 1.08990 * 117.49990 * 359.97438 * 18 17 16 35 35 H 1.09004 * 117.49237 * 214.97568 * 18 17 16 36 36 H 1.08999 * 117.49685 * 145.02116 * 19 17 16 37 37 H 1.08997 * 117.50044 * 359.97438 * 19 17 16 38 38 H 1.08999 * 110.40856 * 260.69071 * 20 12 11 39 39 H 1.09002 * 110.40621 * 23.12974 * 20 12 11 40 40 H 1.08997 * 110.44634 * 234.07610 * 21 20 12 41 41 H 1.09002 * 109.73262 * 112.39784 * 21 20 12 42 42 H 1.08991 * 110.97166 * 217.19801 * 22 21 20 43 43 H 1.09007 * 110.96661 * 93.43384 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1560 -2.5727 0.0005 11 6 -0.4132 -4.0971 0.2254 12 6 0.8811 -4.5068 0.9119 13 7 0.9174 -4.0302 2.2968 14 6 -0.0157 -4.4447 3.1766 15 8 -0.8849 -5.2126 2.8221 16 6 0.0212 -3.9540 4.6011 17 6 -1.1393 -4.5719 5.3836 18 6 -1.2087 -4.2888 6.8856 19 6 -2.2048 -3.6221 5.9345 20 6 1.4389 -5.9084 0.8044 21 6 2.9857 -5.6971 0.6820 22 6 3.2032 -4.1546 0.5570 23 6 1.8807 -3.7026 -0.0016 24 1 1.7895 -4.1090 -1.0088 25 1 -0.4850 0.8401 0.0004 26 1 -0.5721 -2.2608 -0.9574 27 1 -0.6040 -1.9948 0.8089 28 1 -0.5376 -4.6191 -0.7233 29 1 -1.2721 -4.2591 0.8767 30 1 1.6127 -3.4163 2.5804 31 1 -0.0691 -2.8679 4.6137 32 1 0.9653 -4.2455 5.0614 33 1 -1.4685 -5.5528 5.0405 34 1 -0.4274 -3.6628 7.3163 35 1 -1.5835 -5.0835 7.5306 36 1 -3.2348 -3.9782 5.9541 37 1 -2.0787 -2.5571 5.7399 38 1 1.1864 -6.4871 1.6928 39 1 1.0601 -6.4005 -0.0914 40 1 3.3703 -6.2036 -0.2032 41 1 3.4807 -6.0750 1.5766 42 1 4.0158 -3.9299 -0.1337 43 1 3.3879 -3.7063 1.5333 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989902782.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:17 Heat of formation + Delta-G solvation = 21.101037 kcal Electronic energy + Delta-G solvation = -23080.158850 eV Core-core repulsion = 19933.862702 eV Total energy + Delta-G solvation = -3146.296148 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.42158 -38.43961 -36.70586 -34.41166 -32.91828 -31.74053 -30.17727 -28.78819 -26.94007 -25.67008 -24.03007 -22.33763 -21.63976 -20.49214 -19.92770 -19.51167 -18.65083 -16.94275 -16.47855 -15.76356 -15.33988 -14.88385 -14.63441 -14.50984 -13.93389 -13.78449 -13.68096 -13.28858 -12.58156 -12.32792 -12.16996 -11.91547 -11.48517 -11.39981 -11.36561 -11.25463 -11.01179 -10.93087 -10.82377 -10.48495 -10.29997 -10.27109 -10.01442 -9.95635 -9.90031 -9.69565 -9.50460 -8.98379 -8.67578 -8.37650 -6.86722 -5.75742 -3.10383 3.16716 3.36080 3.41328 3.43338 3.65443 3.92865 4.43976 4.64685 4.78814 4.94280 4.99230 5.20377 5.22112 5.30561 5.46463 5.60786 5.62285 5.64401 5.67735 5.74518 5.81282 5.84786 5.93999 5.96390 6.01992 6.14352 6.14526 6.28300 6.31297 6.36993 6.40436 6.44265 6.51721 6.72131 6.85966 6.92747 7.27614 7.52941 7.61104 7.77869 8.14879 8.19203 8.81130 9.12120 9.78746 10.48591 11.36335 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014105 B = 0.006578 C = 0.005171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.676667 B = 4255.423344 C = 5413.891417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.005 4.005 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.231 4.231 8 H 0.079 0.921 9 N -0.583 5.583 10 C 0.180 3.820 11 C -0.142 4.142 12 C 0.132 3.868 13 N -0.691 5.691 14 C 0.517 3.483 15 O -0.549 6.549 16 C -0.113 4.113 17 C -0.133 4.133 18 C -0.185 4.185 19 C -0.178 4.178 20 C -0.111 4.111 21 C -0.116 4.116 22 C -0.115 4.115 23 C 0.158 3.842 24 H 0.020 0.980 25 H 0.253 0.747 26 H 0.033 0.967 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.400 0.600 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.117 0.883 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.139 -9.550 8.423 12.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.201 4.201 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.359 4.359 8 H 0.096 0.904 9 N -0.307 5.307 10 C 0.056 3.944 11 C -0.181 4.181 12 C 0.044 3.956 13 N -0.341 5.341 14 C 0.303 3.697 15 O -0.428 6.428 16 C -0.153 4.153 17 C -0.152 4.152 18 C -0.222 4.222 19 C -0.215 4.215 20 C -0.150 4.150 21 C -0.155 4.155 22 C -0.154 4.154 23 C 0.048 3.952 24 H 0.038 0.962 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.235 0.765 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.135 0.865 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.476 -9.811 8.139 12.833 hybrid contribution 0.758 1.359 0.049 1.557 sum 2.234 -8.452 8.188 11.978 Atomic orbital electron populations 1.69931 1.04899 1.25109 1.56513 1.24796 0.95609 0.97616 1.02111 0.86176 0.78569 0.83705 0.77615 1.21619 1.21748 1.20717 1.19003 0.90236 0.82311 1.44325 0.90365 1.43652 1.01767 0.99175 1.86060 1.21986 0.83075 0.88750 1.00563 1.22820 0.96940 0.99236 0.99105 1.21517 0.98758 0.93463 0.81880 1.45686 1.30652 1.48105 1.09692 1.20364 0.81246 0.80886 0.87231 1.90614 1.36268 1.36219 1.79690 1.21225 0.99218 1.01964 0.92880 1.22024 0.98065 1.01179 0.93899 1.22983 1.02845 1.03675 0.92695 1.23020 0.95716 0.98757 1.04040 1.22042 0.94918 0.96258 1.01803 1.22965 0.95708 0.95870 1.00914 1.21845 0.97961 0.94503 1.01048 1.20800 0.91642 0.87483 0.95311 0.96248 0.93700 0.94869 0.91828 0.91961 0.90459 0.76485 0.88853 0.89099 0.86550 0.88948 0.89002 0.88953 0.88750 0.91591 0.91319 0.91938 0.92317 0.91780 0.91720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.39 10.55 55.49 0.59 -25.80 16 2 C 0.00 -0.12 5.49 -17.43 -0.10 -0.22 16 3 Si 0.91 21.49 29.55 -169.99 -5.02 16.47 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.23 -6.09 10.29 -15.06 -0.15 -6.24 16 8 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.58 -14.13 3.16 -162.70 -0.51 -14.64 16 10 C 0.18 4.38 5.33 -0.76 0.00 4.37 16 11 C -0.14 -2.91 6.10 -25.44 -0.16 -3.06 16 12 C 0.13 2.41 0.42 -130.70 -0.06 2.35 16 13 N -0.69 -12.01 4.48 -46.57 -0.21 -12.21 16 14 C 0.52 8.82 7.22 -10.98 -0.08 8.74 16 15 O -0.55 -10.87 13.68 5.56 0.08 -10.79 16 16 C -0.11 -1.52 5.98 -27.88 -0.17 -1.69 16 17 C -0.13 -1.73 5.41 -90.62 -0.49 -2.22 16 18 C -0.18 -1.95 10.25 -26.73 -0.27 -2.22 16 19 C -0.18 -2.15 10.18 -26.73 -0.27 -2.42 16 20 C -0.11 -1.74 6.24 -25.69 -0.16 -1.90 16 21 C -0.12 -1.61 6.95 -23.03 -0.16 -1.77 16 22 C -0.11 -1.88 6.46 -26.22 -0.17 -2.04 16 23 C 0.16 3.14 2.65 -68.73 -0.18 2.96 16 24 H 0.02 0.42 7.98 -51.93 -0.41 0.01 16 25 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 26 H 0.03 0.88 7.98 -51.93 -0.41 0.47 16 27 H 0.06 1.73 7.05 -51.93 -0.37 1.36 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.08 1.66 6.28 -51.93 -0.33 1.33 16 30 H 0.40 6.80 7.56 -40.82 -0.31 6.49 16 31 H 0.09 1.25 7.88 -51.93 -0.41 0.85 16 32 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.12 1.68 7.31 -51.93 -0.38 1.30 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.09 1.14 8.03 -51.93 -0.42 0.73 16 38 H 0.07 1.05 7.72 -51.93 -0.40 0.65 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.06 1.04 7.17 -51.93 -0.37 0.67 16 LS Contribution 336.09 15.07 5.06 5.06 Total: -1.00 -29.84 336.09 -9.60 -39.44 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -7.16 Total: 7.84 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -2.42 Total: -5.36 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: -0.14 Total: -52.66 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.08 Total: -10.79 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.84 -9.60 -39.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989902782.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.543 kcal (2) G-P(sol) polarization free energy of solvation -29.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds