Wall clock time and date at job start Tue Mar 31 2020 00:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00121 * 2 1 4 4 H 1.48496 * 109.47485 * 270.00466 * 3 2 1 5 5 H 1.48506 * 109.46994 * 30.00646 * 3 2 1 6 6 H 1.48504 * 109.46746 * 150.00236 * 3 2 1 7 7 C 1.38813 * 119.99688 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99937 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00356 * 359.97438 * 7 2 1 10 10 C 1.49298 * 127.10106 * 359.97438 * 9 7 2 11 11 C 1.56228 * 106.50724 * 188.65320 * 10 9 7 12 12 C 1.52133 * 100.81393 * 23.45069 * 11 10 9 13 13 N 1.46507 * 111.09972 * 73.97410 * 12 11 10 14 14 C 1.34776 * 119.99366 * 61.01598 * 13 12 11 15 15 O 1.21281 * 120.00282 * 0.02562 * 14 13 12 16 16 C 1.50702 * 119.99492 * 180.02562 * 14 13 12 17 17 C 1.53006 * 109.47124 * 180.02562 * 16 14 13 18 18 C 1.53000 * 117.49776 * 174.99774 * 17 16 14 19 19 C 1.52997 * 117.49537 * 243.62228 * 17 16 14 20 20 C 1.51234 * 122.09212 * 208.15456 * 12 11 10 21 21 C 1.56590 * 104.17389 * 141.03905 * 20 12 11 22 22 C 1.56283 * 106.07352 * 353.42845 * 21 20 12 23 23 C 1.42697 * 127.10548 * 179.97438 * 9 7 2 24 24 H 1.08994 * 108.15567 * 256.51037 * 23 9 7 25 25 H 0.97001 * 119.99775 * 359.97438 * 1 2 3 26 26 H 1.09002 * 110.05206 * 69.39204 * 10 9 7 27 27 H 1.08998 * 110.05190 * 307.91652 * 10 9 7 28 28 H 1.09000 * 111.15050 * 265.55676 * 11 10 9 29 29 H 1.09005 * 111.14506 * 141.33413 * 11 10 9 30 30 H 0.96994 * 119.99899 * 241.02092 * 13 12 11 31 31 H 1.08997 * 109.47456 * 60.00162 * 16 14 13 32 32 H 1.09003 * 109.47019 * 299.99582 * 16 14 13 33 33 H 1.09002 * 115.56020 * 29.30357 * 17 16 14 34 34 H 1.08990 * 117.49990 * 359.97438 * 18 17 16 35 35 H 1.09004 * 117.49237 * 214.97568 * 18 17 16 36 36 H 1.08999 * 117.49685 * 145.02116 * 19 17 16 37 37 H 1.08997 * 117.50044 * 359.97438 * 19 17 16 38 38 H 1.08999 * 110.40856 * 260.69071 * 20 12 11 39 39 H 1.09002 * 110.40621 * 23.12974 * 20 12 11 40 40 H 1.08997 * 110.44634 * 234.07610 * 21 20 12 41 41 H 1.09002 * 109.73262 * 112.39784 * 21 20 12 42 42 H 1.08991 * 110.97166 * 217.19801 * 22 21 20 43 43 H 1.09007 * 110.96661 * 93.43384 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1560 -2.5727 0.0005 11 6 -0.4132 -4.0971 0.2254 12 6 0.8811 -4.5068 0.9119 13 7 0.9174 -4.0302 2.2968 14 6 -0.0157 -4.4447 3.1766 15 8 -0.8849 -5.2126 2.8221 16 6 0.0212 -3.9540 4.6011 17 6 -1.1393 -4.5719 5.3836 18 6 -1.2087 -4.2888 6.8856 19 6 -2.2048 -3.6221 5.9345 20 6 1.4389 -5.9084 0.8044 21 6 2.9857 -5.6971 0.6820 22 6 3.2032 -4.1546 0.5570 23 6 1.8807 -3.7026 -0.0016 24 1 1.7895 -4.1090 -1.0088 25 1 -0.4850 0.8401 0.0004 26 1 -0.5721 -2.2608 -0.9574 27 1 -0.6040 -1.9948 0.8089 28 1 -0.5376 -4.6191 -0.7233 29 1 -1.2721 -4.2591 0.8767 30 1 1.6127 -3.4163 2.5804 31 1 -0.0691 -2.8679 4.6137 32 1 0.9653 -4.2455 5.0614 33 1 -1.4685 -5.5528 5.0405 34 1 -0.4274 -3.6628 7.3163 35 1 -1.5835 -5.0835 7.5306 36 1 -3.2348 -3.9782 5.9541 37 1 -2.0787 -2.5571 5.7399 38 1 1.1864 -6.4871 1.6928 39 1 1.0601 -6.4005 -0.0914 40 1 3.3703 -6.2036 -0.2032 41 1 3.4807 -6.0750 1.5766 42 1 4.0158 -3.9299 -0.1337 43 1 3.3879 -3.7063 1.5333 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989902782.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:16 Heat of formation + Delta-G solvation = 3.967888 kcal Electronic energy + Delta-G solvation = -23080.901799 eV Core-core repulsion = 19933.862702 eV Total energy + Delta-G solvation = -3147.039098 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.91180 -39.78116 -37.80023 -36.14514 -34.33635 -33.59134 -31.80869 -30.04755 -28.53539 -27.19015 -25.92385 -23.23855 -22.93366 -22.08592 -21.27509 -20.91281 -20.11595 -18.40056 -18.18121 -17.37773 -16.57717 -16.36029 -16.15682 -15.85479 -15.70696 -15.19057 -14.84060 -14.60848 -14.10209 -14.04622 -13.54256 -13.41479 -13.03115 -12.93197 -12.83622 -12.61656 -12.39283 -12.29668 -12.13637 -12.11418 -12.03207 -11.77465 -11.53953 -11.34353 -11.25911 -11.07174 -10.85857 -10.72488 -10.44795 -9.82325 -8.86995 -7.83485 -5.19452 1.47531 1.48742 1.57117 1.82217 2.36297 2.50773 2.95770 3.11554 3.36498 3.72938 3.81895 3.86336 3.89830 4.06507 4.12127 4.21000 4.31232 4.40256 4.43198 4.57891 4.60081 4.64722 4.72420 4.77080 4.80708 4.82570 4.96494 5.00439 5.05206 5.09098 5.12806 5.25171 5.27819 5.30059 5.38731 5.49685 5.56249 5.60686 5.68868 5.86293 6.18281 6.76831 7.04399 7.44591 7.77310 8.50553 9.28489 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014105 B = 0.006578 C = 0.005171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.676667 B = 4255.423344 C = 5413.891417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.064 4.064 3 Si 0.974 3.026 4 H -0.292 1.292 5 H -0.300 1.300 6 H -0.263 1.263 7 C -0.230 4.230 8 H 0.090 0.910 9 N -0.596 5.596 10 C 0.193 3.807 11 C -0.132 4.132 12 C 0.139 3.861 13 N -0.692 5.692 14 C 0.511 3.489 15 O -0.580 6.580 16 C -0.104 4.104 17 C -0.152 4.152 18 C -0.156 4.156 19 C -0.192 4.192 20 C -0.107 4.107 21 C -0.101 4.101 22 C -0.110 4.110 23 C 0.145 3.855 24 H 0.012 0.988 25 H 0.244 0.756 26 H -0.004 1.004 27 H 0.027 0.973 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.403 0.597 31 H 0.092 0.908 32 H 0.120 0.880 33 H 0.099 0.901 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.495 -10.737 9.853 15.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.257 4.257 3 Si 0.803 3.197 4 H -0.219 1.219 5 H -0.227 1.227 6 H -0.188 1.188 7 C -0.359 4.359 8 H 0.108 0.892 9 N -0.319 5.319 10 C 0.069 3.931 11 C -0.171 4.171 12 C 0.051 3.949 13 N -0.342 5.342 14 C 0.299 3.701 15 O -0.460 6.460 16 C -0.144 4.144 17 C -0.171 4.171 18 C -0.193 4.193 19 C -0.229 4.229 20 C -0.146 4.146 21 C -0.139 4.139 22 C -0.148 4.148 23 C 0.036 3.964 24 H 0.030 0.970 25 H 0.054 0.946 26 H 0.014 0.986 27 H 0.046 0.954 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.238 0.762 31 H 0.111 0.889 32 H 0.138 0.862 33 H 0.117 0.883 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.876 -11.030 9.578 15.113 hybrid contribution -0.024 1.704 -0.448 1.762 sum 3.852 -9.326 9.129 13.607 Atomic orbital electron populations 1.70159 1.06483 1.25110 1.58434 1.25596 0.96332 1.00912 1.02871 0.85142 0.77882 0.79477 0.77208 1.21913 1.22672 1.18751 1.19412 0.90898 0.83134 1.42459 0.89237 1.43769 1.01752 1.00474 1.85924 1.21631 0.83503 0.90844 0.97143 1.22659 0.98050 0.96532 0.99873 1.21477 0.96320 0.95082 0.82054 1.45727 1.30957 1.48168 1.09341 1.21013 0.80346 0.80208 0.88505 1.90597 1.37274 1.37682 1.80493 1.21222 1.00962 1.01680 0.90502 1.21950 0.98530 1.00536 0.96057 1.23077 1.01854 1.03303 0.91070 1.23091 0.96098 0.98437 1.05266 1.22036 0.96336 0.94024 1.02178 1.22894 0.94059 0.93859 1.03087 1.21865 0.95755 0.96229 1.00994 1.21028 0.94582 0.85267 0.95485 0.97047 0.94642 0.98575 0.95413 0.90793 0.91697 0.76170 0.88922 0.86192 0.88321 0.87379 0.87451 0.88810 0.89185 0.91596 0.90616 0.89901 0.90006 0.91064 0.91427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.98 10.55 21.65 0.23 -56.76 16 2 C -0.06 -3.55 5.49 84.86 0.47 -3.08 16 3 Si 0.97 44.56 29.55 68.60 2.03 46.59 16 4 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 5 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 7 C -0.23 -12.18 10.29 84.03 0.86 -11.31 16 8 H 0.09 4.44 7.83 -2.91 -0.02 4.42 16 9 N -0.60 -29.23 3.16 -668.65 -2.11 -31.35 16 10 C 0.19 9.85 5.33 86.96 0.46 10.31 16 11 C -0.13 -5.54 6.10 31.43 0.19 -5.35 16 12 C 0.14 4.96 0.42 4.32 0.00 4.96 16 13 N -0.69 -23.50 4.48 -419.64 -1.88 -25.38 16 14 C 0.51 17.22 7.22 87.66 0.63 17.85 16 15 O -0.58 -23.06 13.68 -3.03 -0.04 -23.10 16 16 C -0.10 -2.66 5.98 29.85 0.18 -2.48 16 17 C -0.15 -3.80 5.41 -10.79 -0.06 -3.86 16 18 C -0.16 -2.90 10.25 30.60 0.31 -2.58 16 19 C -0.19 -4.46 10.18 30.60 0.31 -4.15 16 20 C -0.11 -3.08 6.24 31.27 0.20 -2.88 16 21 C -0.10 -2.39 6.95 32.99 0.23 -2.16 16 22 C -0.11 -3.28 6.46 30.93 0.20 -3.08 16 23 C 0.15 5.65 2.65 46.47 0.12 5.77 16 24 H 0.01 0.49 7.98 -2.39 -0.02 0.48 16 25 H 0.24 14.38 8.31 -92.71 -0.77 13.61 16 26 H 0.00 -0.23 7.98 -2.39 -0.02 -0.25 16 27 H 0.03 1.59 7.05 -2.39 -0.02 1.58 16 28 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 29 H 0.06 2.88 6.28 -2.38 -0.01 2.87 16 30 H 0.40 13.22 7.56 -92.71 -0.70 12.52 16 31 H 0.09 2.41 7.88 -2.39 -0.02 2.39 16 32 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.10 2.84 7.31 -2.39 -0.02 2.82 16 34 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.11 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.09 2.15 8.03 -2.39 -0.02 2.13 16 38 H 0.07 1.94 7.72 -2.39 -0.02 1.92 16 39 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.07 1.98 7.17 -2.38 -0.02 1.97 16 Total: -1.00 -66.67 336.09 2.62 -64.04 By element: Atomic # 1 Polarization: 27.71 SS G_CDS: 0.29 Total: 28.00 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: 4.11 Total: -2.05 kcal Atomic # 7 Polarization: -109.71 SS G_CDS: -3.77 Total: -113.48 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.04 Total: -23.10 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -66.67 2.62 -64.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989902782.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.010 kcal (2) G-P(sol) polarization free energy of solvation -66.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds