Wall clock time and date at job start Tue Mar 31 2020 00:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99915 * 2 1 4 4 H 1.48497 * 109.47410 * 240.00051 * 3 2 1 5 5 H 1.48498 * 109.47153 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46938 * 119.99951 * 3 2 1 7 7 C 1.38811 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00016 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00110 * 0.02562 * 7 2 1 10 10 C 1.47372 * 125.57985 * 359.97438 * 9 7 2 11 11 C 1.54863 * 104.82403 * 155.33403 * 10 9 7 12 12 C 1.54914 * 101.76862 * 37.07020 * 11 10 9 13 13 N 1.46495 * 112.33186 * 86.21405 * 12 11 10 14 14 C 1.34780 * 119.99959 * 64.36249 * 13 12 11 15 15 O 1.21278 * 119.99768 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00083 * 179.97438 * 14 13 12 17 17 C 1.53001 * 109.47261 * 180.02562 * 16 14 13 18 18 C 1.52998 * 117.49745 * 243.62202 * 17 16 14 19 19 C 1.52996 * 117.49849 * 174.99886 * 17 16 14 20 20 C 1.53587 * 109.08998 * 211.89019 * 12 11 10 21 21 C 1.54659 * 106.72449 * 113.07167 * 20 12 11 22 22 C 1.54761 * 103.94775 * 335.09031 * 21 20 12 23 23 C 1.46980 * 125.58376 * 180.02562 * 9 7 2 24 24 H 1.08999 * 111.81349 * 58.07640 * 23 9 7 25 25 H 0.97000 * 119.99814 * 0.02562 * 1 2 3 26 26 H 1.09000 * 110.36918 * 274.16694 * 10 9 7 27 27 H 1.09002 * 110.36942 * 36.38599 * 10 9 7 28 28 H 1.08999 * 110.97194 * 155.19015 * 11 10 9 29 29 H 1.09000 * 110.96728 * 278.94857 * 11 10 9 30 30 H 0.97000 * 120.00325 * 244.35312 * 13 12 11 31 31 H 1.09005 * 109.47067 * 299.99323 * 16 14 13 32 32 H 1.09000 * 109.47457 * 59.99328 * 16 14 13 33 33 H 1.09002 * 115.54712 * 29.32372 * 17 16 14 34 34 H 1.09003 * 117.49774 * 359.97438 * 18 17 16 35 35 H 1.08997 * 117.50165 * 145.01946 * 18 17 16 36 36 H 1.09002 * 117.49704 * 214.97455 * 19 17 16 37 37 H 1.08991 * 117.49937 * 359.97159 * 19 17 16 38 38 H 1.09001 * 110.01521 * 232.38489 * 20 12 11 39 39 H 1.08997 * 110.01679 * 353.72406 * 20 12 11 40 40 H 1.09000 * 110.67728 * 216.45173 * 21 20 12 41 41 H 1.08997 * 110.51086 * 93.65198 * 21 20 12 42 42 H 1.09002 * 110.67220 * 279.28301 * 22 21 20 43 43 H 1.09001 * 110.66738 * 156.31521 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 -0.1411 -2.5313 -0.0017 11 6 -0.4031 -3.9234 -0.6277 12 6 0.7721 -4.7539 -0.0544 13 7 0.4652 -5.3173 1.2626 14 6 -0.5201 -6.2276 1.3932 15 8 -1.1529 -6.5800 0.4204 16 6 -0.8355 -6.8076 2.7478 17 6 -1.9852 -7.8089 2.6189 18 6 -3.2901 -7.4839 3.3486 19 6 -2.3790 -8.5972 3.8696 20 6 1.1758 -5.8259 -1.0775 21 6 2.5934 -5.4567 -1.5732 22 6 2.6839 -3.9293 -1.3405 23 6 1.9332 -3.7264 -0.0017 24 1 2.5872 -3.8743 0.8576 25 1 -0.4850 0.8401 -0.0004 26 1 -0.5259 -2.4953 1.0175 27 1 -0.5987 -1.7490 -0.6072 28 1 -1.3616 -4.3249 -0.2987 29 1 -0.3540 -3.8773 -1.7157 30 1 0.9711 -5.0353 2.0407 31 1 0.0458 -7.3155 3.1397 32 1 -1.1254 -6.0064 3.4276 33 1 -2.0588 -8.3190 1.6584 34 1 -3.3294 -6.5570 3.9208 35 1 -4.2226 -7.7802 2.8682 36 1 -2.7122 -9.6259 3.7319 37 1 -1.8188 -8.4029 4.7841 38 1 1.1904 -6.8074 -0.6035 39 1 0.4762 -5.8261 -1.9134 40 1 2.7032 -5.6884 -2.6326 41 1 3.3507 -5.9775 -0.9872 42 1 2.1882 -3.3874 -2.1459 43 1 3.7237 -3.6149 -1.2500 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989902783.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:20 Heat of formation + Delta-G solvation = 8.428956 kcal Electronic energy + Delta-G solvation = -22697.798758 eV Core-core repulsion = 19550.953107 eV Total energy + Delta-G solvation = -3146.845651 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.16785 -38.42959 -36.86409 -34.21638 -33.35479 -31.46109 -30.19798 -28.93524 -26.69138 -25.79625 -23.81917 -22.46365 -21.80019 -20.44667 -19.96141 -19.35990 -18.73326 -17.04717 -16.92261 -15.71068 -15.52940 -15.02723 -14.81485 -14.15666 -14.03793 -13.69728 -13.51417 -13.05444 -12.90829 -12.43079 -12.12910 -11.76091 -11.66804 -11.59060 -11.44538 -11.14409 -10.97218 -10.83123 -10.63508 -10.51453 -10.41465 -10.16662 -10.08361 -10.00885 -9.94499 -9.71614 -9.59631 -9.26006 -8.64919 -8.48344 -6.84867 -5.64085 -3.07421 2.95924 3.39298 3.42544 3.44874 3.45518 3.78008 4.47527 4.63496 4.74863 4.85182 4.94138 5.12657 5.19420 5.34261 5.44098 5.51478 5.52628 5.54372 5.63001 5.67976 5.81018 5.87007 5.88317 6.01647 6.03198 6.10421 6.17009 6.24261 6.33137 6.39110 6.44822 6.56990 6.62643 6.80656 6.82027 7.02255 7.17626 7.55638 7.64666 7.86444 7.92080 8.37593 8.59292 9.21922 9.82998 10.47451 11.38273 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021567 B = 0.004820 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.956554 B = 5807.183472 C = 6623.897590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.010 4.010 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.221 4.221 8 H 0.076 0.924 9 N -0.596 5.596 10 C 0.152 3.848 11 C -0.141 4.141 12 C 0.162 3.838 13 N -0.707 5.707 14 C 0.514 3.486 15 O -0.538 6.538 16 C -0.112 4.112 17 C -0.135 4.135 18 C -0.178 4.178 19 C -0.184 4.184 20 C -0.109 4.109 21 C -0.125 4.125 22 C -0.130 4.130 23 C 0.161 3.839 24 H 0.046 0.954 25 H 0.252 0.748 26 H 0.008 0.992 27 H 0.107 0.893 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.399 0.601 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.118 0.882 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.074 0.926 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.240 -14.446 4.886 15.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.350 4.350 8 H 0.094 0.906 9 N -0.320 5.320 10 C 0.028 3.972 11 C -0.181 4.181 12 C 0.075 3.925 13 N -0.357 5.357 14 C 0.300 3.700 15 O -0.415 6.415 16 C -0.152 4.152 17 C -0.154 4.154 18 C -0.215 4.215 19 C -0.221 4.221 20 C -0.148 4.148 21 C -0.163 4.163 22 C -0.170 4.170 23 C 0.053 3.947 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.026 0.974 27 H 0.125 0.875 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.233 0.767 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.136 0.864 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.092 0.908 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.762 -14.425 4.197 15.042 hybrid contribution 0.720 1.041 0.542 1.377 sum -0.042 -13.384 4.739 14.198 Atomic orbital electron populations 1.69797 1.04876 1.24811 1.57408 1.24776 0.95660 0.97648 1.02435 0.86179 0.78401 0.83209 0.77849 1.21175 1.21633 1.21302 1.18993 0.90413 0.82360 1.43202 0.90590 1.44526 1.01820 0.99194 1.86447 1.21968 0.84344 0.93024 0.97876 1.23316 0.96757 0.98040 0.99943 1.21593 0.96635 0.92252 0.81991 1.45922 1.36403 1.42736 1.10639 1.20428 0.79553 0.79110 0.90863 1.90661 1.49978 1.60537 1.40335 1.21235 0.99222 0.98997 0.95785 1.22035 0.95212 1.00836 0.97313 1.23024 0.94810 0.99843 1.03862 1.22988 1.04304 0.96876 0.97917 1.22310 0.96534 0.97654 0.98257 1.22442 0.96402 0.97335 1.00129 1.22961 1.00338 0.93954 0.99756 1.21811 0.91688 0.85930 0.95299 0.93646 0.93716 0.97394 0.87487 0.91622 0.91515 0.76738 0.88851 0.88936 0.86438 0.88812 0.88858 0.88894 0.88905 0.92372 0.91257 0.92261 0.92404 0.90772 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.61 10.07 55.49 0.56 -26.05 16 2 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 3 Si 0.91 21.79 29.55 -169.99 -5.02 16.76 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.22 -5.96 10.01 -15.06 -0.15 -6.11 16 8 H 0.08 1.97 7.83 -52.48 -0.41 1.56 16 9 N -0.60 -14.65 3.03 -161.10 -0.49 -15.14 16 10 C 0.15 3.74 5.91 -2.58 -0.02 3.72 16 11 C -0.14 -2.93 5.75 -24.74 -0.14 -3.07 16 12 C 0.16 2.92 0.74 -129.38 -0.10 2.82 16 13 N -0.71 -11.05 5.25 -45.36 -0.24 -11.29 16 14 C 0.51 7.85 7.00 -10.99 -0.08 7.77 16 15 O -0.54 -9.93 13.44 5.56 0.07 -9.86 16 16 C -0.11 -1.26 5.98 -27.88 -0.17 -1.43 16 17 C -0.14 -1.54 5.41 -90.62 -0.49 -2.03 16 18 C -0.18 -1.84 10.18 -26.73 -0.27 -2.11 16 19 C -0.18 -1.66 10.25 -26.73 -0.27 -1.93 16 20 C -0.11 -1.79 5.25 -25.55 -0.13 -1.93 16 21 C -0.12 -1.89 6.87 -24.93 -0.17 -2.06 16 22 C -0.13 -2.36 6.20 -24.84 -0.15 -2.52 16 23 C 0.16 3.21 3.65 -65.57 -0.24 2.97 16 24 H 0.05 0.89 8.02 -51.93 -0.42 0.47 16 25 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 26 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.11 2.98 5.82 -51.93 -0.30 2.68 16 28 H 0.07 1.39 6.82 -51.93 -0.35 1.03 16 29 H 0.07 1.39 7.62 -51.93 -0.40 0.99 16 30 H 0.40 5.49 8.52 -40.82 -0.35 5.14 16 31 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.09 0.96 7.88 -51.93 -0.41 0.55 16 33 H 0.12 1.54 7.31 -51.93 -0.38 1.16 16 34 H 0.09 0.93 8.03 -51.93 -0.42 0.52 16 35 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.94 7.43 -51.93 -0.39 0.55 16 39 H 0.07 1.19 7.37 -51.93 -0.38 0.81 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 1.50 8.09 -51.93 -0.42 1.08 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 335.51 15.07 5.06 5.06 Total: -1.00 -30.32 335.51 -9.68 -40.00 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -7.14 Total: 6.78 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -2.48 Total: -6.27 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: -0.17 Total: -52.47 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.07 Total: -9.86 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.32 -9.68 -40.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989902783.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.430 kcal (2) G-P(sol) polarization free energy of solvation -30.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds