Wall clock time and date at job start Tue Mar 31 2020 00:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99915 * 2 1 4 4 H 1.48497 * 109.47410 * 240.00051 * 3 2 1 5 5 H 1.48498 * 109.47153 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46938 * 119.99951 * 3 2 1 7 7 C 1.38811 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00016 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00110 * 0.02562 * 7 2 1 10 10 C 1.47372 * 125.57985 * 359.97438 * 9 7 2 11 11 C 1.54863 * 104.82403 * 155.33403 * 10 9 7 12 12 C 1.54914 * 101.76862 * 37.07020 * 11 10 9 13 13 N 1.46495 * 112.33186 * 86.21405 * 12 11 10 14 14 C 1.34780 * 119.99959 * 64.36249 * 13 12 11 15 15 O 1.21278 * 119.99768 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00083 * 179.97438 * 14 13 12 17 17 C 1.53001 * 109.47261 * 180.02562 * 16 14 13 18 18 C 1.52998 * 117.49745 * 243.62202 * 17 16 14 19 19 C 1.52996 * 117.49849 * 174.99886 * 17 16 14 20 20 C 1.53587 * 109.08998 * 211.89019 * 12 11 10 21 21 C 1.54659 * 106.72449 * 113.07167 * 20 12 11 22 22 C 1.54761 * 103.94775 * 335.09031 * 21 20 12 23 23 C 1.46980 * 125.58376 * 180.02562 * 9 7 2 24 24 H 1.08999 * 111.81349 * 58.07640 * 23 9 7 25 25 H 0.97000 * 119.99814 * 0.02562 * 1 2 3 26 26 H 1.09000 * 110.36918 * 274.16694 * 10 9 7 27 27 H 1.09002 * 110.36942 * 36.38599 * 10 9 7 28 28 H 1.08999 * 110.97194 * 155.19015 * 11 10 9 29 29 H 1.09000 * 110.96728 * 278.94857 * 11 10 9 30 30 H 0.97000 * 120.00325 * 244.35312 * 13 12 11 31 31 H 1.09005 * 109.47067 * 299.99323 * 16 14 13 32 32 H 1.09000 * 109.47457 * 59.99328 * 16 14 13 33 33 H 1.09002 * 115.54712 * 29.32372 * 17 16 14 34 34 H 1.09003 * 117.49774 * 359.97438 * 18 17 16 35 35 H 1.08997 * 117.50165 * 145.01946 * 18 17 16 36 36 H 1.09002 * 117.49704 * 214.97455 * 19 17 16 37 37 H 1.08991 * 117.49937 * 359.97159 * 19 17 16 38 38 H 1.09001 * 110.01521 * 232.38489 * 20 12 11 39 39 H 1.08997 * 110.01679 * 353.72406 * 20 12 11 40 40 H 1.09000 * 110.67728 * 216.45173 * 21 20 12 41 41 H 1.08997 * 110.51086 * 93.65198 * 21 20 12 42 42 H 1.09002 * 110.67220 * 279.28301 * 22 21 20 43 43 H 1.09001 * 110.66738 * 156.31521 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 -0.1411 -2.5313 -0.0017 11 6 -0.4031 -3.9234 -0.6277 12 6 0.7721 -4.7539 -0.0544 13 7 0.4652 -5.3173 1.2626 14 6 -0.5201 -6.2276 1.3932 15 8 -1.1529 -6.5800 0.4204 16 6 -0.8355 -6.8076 2.7478 17 6 -1.9852 -7.8089 2.6189 18 6 -3.2901 -7.4839 3.3486 19 6 -2.3790 -8.5972 3.8696 20 6 1.1758 -5.8259 -1.0775 21 6 2.5934 -5.4567 -1.5732 22 6 2.6839 -3.9293 -1.3405 23 6 1.9332 -3.7264 -0.0017 24 1 2.5872 -3.8743 0.8576 25 1 -0.4850 0.8401 -0.0004 26 1 -0.5259 -2.4953 1.0175 27 1 -0.5987 -1.7490 -0.6072 28 1 -1.3616 -4.3249 -0.2987 29 1 -0.3540 -3.8773 -1.7157 30 1 0.9711 -5.0353 2.0407 31 1 0.0458 -7.3155 3.1397 32 1 -1.1254 -6.0064 3.4276 33 1 -2.0588 -8.3190 1.6584 34 1 -3.3294 -6.5570 3.9208 35 1 -4.2226 -7.7802 2.8682 36 1 -2.7122 -9.6259 3.7319 37 1 -1.8188 -8.4029 4.7841 38 1 1.1904 -6.8074 -0.6035 39 1 0.4762 -5.8261 -1.9134 40 1 2.7032 -5.6884 -2.6326 41 1 3.3507 -5.9775 -0.9872 42 1 2.1882 -3.3874 -2.1459 43 1 3.7237 -3.6149 -1.2500 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989902783.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:19 Heat of formation + Delta-G solvation = -9.364827 kcal Electronic energy + Delta-G solvation = -22698.570355 eV Core-core repulsion = 19550.953107 eV Total energy + Delta-G solvation = -3147.617247 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.57461 -39.74710 -37.82871 -36.00491 -34.69568 -33.32702 -31.75837 -30.15349 -28.40209 -27.28676 -25.71954 -23.23244 -23.06188 -21.84852 -21.45223 -20.63246 -20.16576 -18.89342 -18.20116 -17.14966 -16.84034 -16.54478 -16.16435 -15.76073 -15.13722 -15.05085 -14.90695 -14.55509 -14.42970 -13.89320 -13.61545 -13.32130 -13.09744 -12.91926 -12.79285 -12.63601 -12.37517 -12.29962 -12.26129 -12.06616 -11.88589 -11.69100 -11.55794 -11.48013 -11.25221 -11.24346 -10.88570 -10.70826 -10.57285 -9.89274 -8.85891 -7.73012 -5.18049 1.48330 1.50948 1.57176 1.76207 2.23778 2.52073 2.96553 3.36100 3.38867 3.65473 3.81292 3.83378 3.96542 3.97976 4.08201 4.22262 4.36505 4.41635 4.47223 4.58664 4.60889 4.66893 4.72045 4.77519 4.81926 4.82791 4.93104 4.98069 5.07075 5.09263 5.18440 5.23138 5.29511 5.32651 5.39637 5.48389 5.51985 5.64962 5.74211 5.85511 6.31560 6.68741 7.12486 7.38335 7.81177 8.45445 9.28139 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021567 B = 0.004820 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.956554 B = 5807.183472 C = 6623.897590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.068 4.068 3 Si 0.977 3.023 4 H -0.278 1.278 5 H -0.299 1.299 6 H -0.277 1.277 7 C -0.227 4.227 8 H 0.085 0.915 9 N -0.612 5.612 10 C 0.163 3.837 11 C -0.129 4.129 12 C 0.171 3.829 13 N -0.705 5.705 14 C 0.511 3.489 15 O -0.573 6.573 16 C -0.102 4.102 17 C -0.155 4.155 18 C -0.190 4.190 19 C -0.159 4.159 20 C -0.102 4.102 21 C -0.110 4.110 22 C -0.126 4.126 23 C 0.154 3.846 24 H 0.059 0.941 25 H 0.244 0.756 26 H -0.017 1.017 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.409 0.591 31 H 0.123 0.877 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.111 0.889 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.046 0.954 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.605 -16.183 6.007 17.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.261 4.261 3 Si 0.806 3.194 4 H -0.204 1.204 5 H -0.225 1.225 6 H -0.203 1.203 7 C -0.356 4.356 8 H 0.103 0.897 9 N -0.336 5.336 10 C 0.038 3.962 11 C -0.169 4.169 12 C 0.084 3.916 13 N -0.356 5.356 14 C 0.299 3.701 15 O -0.452 6.452 16 C -0.141 4.141 17 C -0.174 4.174 18 C -0.227 4.227 19 C -0.196 4.196 20 C -0.141 4.141 21 C -0.148 4.148 22 C -0.166 4.166 23 C 0.047 3.953 24 H 0.077 0.923 25 H 0.054 0.946 26 H 0.001 0.999 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.245 0.755 31 H 0.141 0.859 32 H 0.123 0.877 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.121 0.879 37 H 0.129 0.871 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.065 0.935 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.120 -16.199 5.337 17.092 hybrid contribution 0.111 1.554 0.191 1.570 sum 1.231 -14.645 5.528 15.702 Atomic orbital electron populations 1.70062 1.06333 1.24804 1.59021 1.25589 0.96439 1.00906 1.03116 0.85162 0.77044 0.79001 0.78194 1.20376 1.22525 1.20317 1.19386 0.91027 0.83364 1.41773 0.89688 1.44713 1.01862 1.00586 1.86410 1.21611 0.84691 0.94016 0.95879 1.23114 0.97864 0.96473 0.99429 1.21399 0.94273 0.92290 0.83656 1.45896 1.36941 1.42715 1.10058 1.21172 0.78493 0.78320 0.92111 1.90650 1.50996 1.61624 1.41978 1.21247 1.00422 0.99312 0.93154 1.21967 0.95938 1.01944 0.97537 1.23109 0.94566 1.00883 1.04141 1.23077 1.02571 0.96837 0.97075 1.22238 0.97282 0.97291 0.97337 1.22383 0.95885 0.94721 1.01768 1.22826 1.00047 0.96217 0.97531 1.22070 0.92526 0.84017 0.96696 0.92329 0.94619 0.99910 0.91209 0.92313 0.92025 0.75487 0.85889 0.87736 0.88677 0.88526 0.89126 0.87900 0.87095 0.91484 0.92326 0.90462 0.89880 0.93470 0.91570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.07 10.07 21.65 0.22 -56.86 16 2 C -0.07 -3.83 5.49 84.86 0.47 -3.37 16 3 Si 0.98 45.23 29.55 68.60 2.03 47.26 16 4 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 6 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.23 -12.26 10.01 84.03 0.84 -11.42 16 8 H 0.09 4.35 7.83 -2.91 -0.02 4.32 16 9 N -0.61 -30.42 3.03 -663.59 -2.01 -32.43 16 10 C 0.16 8.34 5.91 86.85 0.51 8.85 16 11 C -0.13 -5.51 5.75 31.88 0.18 -5.32 16 12 C 0.17 6.04 0.74 5.19 0.00 6.04 16 13 N -0.71 -21.07 5.25 -415.80 -2.18 -23.25 16 14 C 0.51 14.98 7.00 87.66 0.61 15.59 16 15 O -0.57 -21.01 13.44 -3.02 -0.04 -21.05 16 16 C -0.10 -2.06 5.98 29.85 0.18 -1.88 16 17 C -0.16 -3.29 5.41 -10.80 -0.06 -3.35 16 18 C -0.19 -3.67 10.18 30.59 0.31 -3.35 16 19 C -0.16 -2.43 10.25 30.59 0.31 -2.12 16 20 C -0.10 -3.19 5.25 31.36 0.16 -3.03 16 21 C -0.11 -2.98 6.87 31.76 0.22 -2.76 16 22 C -0.13 -4.39 6.20 31.82 0.20 -4.19 16 23 C 0.15 5.95 3.65 46.26 0.17 6.12 16 24 H 0.06 2.15 8.02 -2.39 -0.02 2.13 16 25 H 0.24 14.37 8.31 -92.71 -0.77 13.60 16 26 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 27 H 0.07 4.11 5.82 -2.39 -0.01 4.10 16 28 H 0.06 2.56 6.82 -2.39 -0.02 2.55 16 29 H 0.06 2.65 7.62 -2.39 -0.02 2.63 16 30 H 0.41 10.46 8.52 -92.71 -0.79 9.67 16 31 H 0.12 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.10 1.90 7.88 -2.39 -0.02 1.88 16 33 H 0.10 2.47 7.31 -2.39 -0.02 2.45 16 34 H 0.10 1.79 8.03 -2.39 -0.02 1.77 16 35 H 0.09 1.75 8.14 -2.39 -0.02 1.74 16 36 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.07 1.99 7.43 -2.39 -0.02 1.98 16 39 H 0.06 1.96 7.37 -2.39 -0.02 1.94 16 40 H 0.08 1.87 8.14 -2.39 -0.02 1.86 16 41 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.05 1.89 8.09 -2.39 -0.02 1.87 16 43 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -67.54 335.51 2.33 -65.20 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: 0.20 Total: 25.31 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 4.11 Total: -4.19 kcal Atomic # 7 Polarization: -108.56 SS G_CDS: -3.97 Total: -112.53 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.04 Total: -21.05 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -67.54 2.33 -65.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989902783.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.838 kcal (2) G-P(sol) polarization free energy of solvation -67.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds