Wall clock time and date at job start Tue Mar 31 2020 00:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86798 * 120.00183 * 2 1 4 4 H 1.48504 * 109.47221 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47194 * 300.00048 * 3 2 1 6 6 H 1.48499 * 109.47058 * 60.00101 * 3 2 1 7 7 C 1.38812 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99814 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00153 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00230 * 180.02562 * 9 7 2 11 11 C 1.53039 * 109.46224 * 155.00151 * 10 9 7 12 12 C 1.53191 * 109.31373 * 181.38591 * 11 10 9 13 13 N 1.46932 * 108.77357 * 305.36241 * 12 11 10 14 14 C 1.34778 * 120.62820 * 233.58409 * 13 12 11 15 15 O 1.21272 * 120.00127 * 0.02562 * 14 13 12 16 16 C 1.50696 * 119.99804 * 179.97438 * 14 13 12 17 17 C 1.52999 * 109.47100 * 180.02562 * 16 14 13 18 18 H 1.08997 * 110.43531 * 52.65244 * 17 16 14 19 19 C 1.51099 * 110.38676 * 290.30316 * 17 16 14 20 20 C 1.30532 * 111.10544 * 224.74999 * 19 17 16 21 21 C 1.51105 * 111.10038 * 0.02562 * 20 19 17 22 22 C 1.54632 * 104.72718 * 16.43519 * 21 20 19 23 23 C 1.46923 * 118.73766 * 53.86139 * 13 12 11 24 24 C 1.53045 * 109.45873 * 275.06787 * 10 9 7 25 25 H 0.97001 * 119.99747 * 359.97438 * 1 2 3 26 26 H 0.97002 * 119.99878 * 359.97438 * 9 7 2 27 27 H 1.09000 * 109.46094 * 35.01972 * 10 9 7 28 28 H 1.08992 * 109.50052 * 61.42954 * 11 10 9 29 29 H 1.09003 * 109.51952 * 301.35099 * 11 10 9 30 30 H 1.08998 * 109.59033 * 185.57486 * 12 11 10 31 31 H 1.09007 * 109.70794 * 65.21515 * 12 11 10 32 32 H 1.09001 * 109.47112 * 60.00117 * 16 14 13 33 33 H 1.09000 * 109.47247 * 300.00275 * 16 14 13 34 34 H 1.08000 * 124.44620 * 44.77307 * 19 17 16 35 35 H 1.08001 * 124.44896 * 180.02562 * 20 19 17 36 36 H 1.08998 * 110.38545 * 257.62166 * 21 20 19 37 37 H 1.09003 * 110.38022 * 135.24943 * 21 20 19 38 38 H 1.08995 * 111.03420 * 217.32998 * 22 21 20 39 39 H 1.08998 * 111.03825 * 93.39945 * 22 21 20 40 40 H 1.08995 * 109.58861 * 65.92448 * 23 13 12 41 41 H 1.09004 * 109.58602 * 186.35129 * 23 13 12 42 42 H 1.09005 * 109.49498 * 298.56773 * 24 10 9 43 43 H 1.08997 * 109.50031 * 58.65907 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0017 11 6 1.1799 -4.7520 0.6113 12 6 1.9613 -6.0692 0.6425 13 7 2.4419 -6.3662 -0.7138 14 6 2.1743 -7.5538 -1.2924 15 8 1.5310 -8.3890 -0.6930 16 6 2.6737 -7.8432 -2.6844 17 6 2.2356 -9.2486 -3.1015 18 1 1.1605 -9.3676 -2.9673 19 6 2.9841 -10.2915 -2.3045 20 6 3.4087 -11.2562 -3.0745 21 6 3.0147 -11.0171 -4.5135 22 6 2.6292 -9.5207 -4.5721 23 6 3.2247 -5.3465 -1.4251 24 6 2.4244 -4.0353 -1.4353 25 1 -0.4850 0.8401 0.0004 26 1 0.3555 -2.3880 0.0005 27 1 2.9680 -3.5502 0.5921 28 1 0.2813 -4.8763 0.0070 29 1 0.8995 -4.4711 1.6265 30 1 1.3090 -6.8732 0.9833 31 1 2.8111 -5.9765 1.3190 32 1 3.7619 -7.7818 -2.7002 33 1 2.2585 -7.1126 -3.3786 34 1 3.1462 -10.2450 -1.2377 35 1 3.9682 -12.1127 -2.7285 36 1 2.1614 -11.6398 -4.7820 37 1 3.8564 -11.2186 -5.1761 38 1 1.7825 -9.3607 -5.2396 39 1 3.4807 -8.9086 -4.8693 40 1 4.1753 -5.1935 -0.9142 41 1 3.4062 -5.6734 -2.4490 42 1 1.5140 -4.1663 -2.0203 43 1 3.0303 -3.2440 -1.8767 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989914640.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:18 Heat of formation + Delta-G solvation = -16.993840 kcal Electronic energy + Delta-G solvation = -21721.857299 eV Core-core repulsion = 18573.909233 eV Total energy + Delta-G solvation = -3147.948066 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.27382 -38.67536 -37.17834 -34.47565 -32.38381 -31.63871 -30.52509 -29.23188 -29.06185 -25.97008 -24.49478 -22.99551 -22.43360 -20.78088 -20.20686 -19.12733 -18.42742 -17.15897 -17.00464 -16.10713 -15.83452 -15.36136 -14.87083 -14.78682 -13.82907 -13.78007 -13.60276 -13.46810 -13.21281 -12.82618 -12.28675 -12.14875 -12.02510 -11.97789 -11.86286 -11.55909 -11.42113 -11.25318 -10.99019 -10.93894 -10.84990 -10.82915 -10.48900 -10.22163 -9.84064 -9.70366 -9.58603 -9.02770 -8.93786 -8.45994 -7.00463 -5.80298 -3.09578 2.17781 2.74777 3.14011 3.40231 3.45728 3.48185 4.36092 4.45210 4.55130 4.65984 4.76826 5.02878 5.10035 5.22302 5.26737 5.33112 5.35054 5.38697 5.43081 5.48977 5.52524 5.61314 5.64214 5.69441 5.72655 5.78115 5.94442 5.99856 6.01510 6.12157 6.22446 6.35883 6.38657 6.44395 6.50406 6.63306 6.78564 6.88619 7.02229 7.56229 7.66159 8.29950 8.37960 9.49229 10.06877 10.41494 11.42346 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.037996 B = 0.003170 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.750588 B = 8830.542753 C = 9170.962944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.725 5.725 10 C 0.179 3.821 11 C -0.138 4.138 12 C 0.116 3.884 13 N -0.608 5.608 14 C 0.513 3.487 15 O -0.549 6.549 16 C -0.132 4.132 17 C -0.054 4.054 18 H 0.090 0.910 19 C -0.137 4.137 20 C -0.186 4.186 21 C -0.098 4.098 22 C -0.123 4.123 23 C 0.107 3.893 24 C -0.151 4.151 25 H 0.255 0.745 26 H 0.384 0.616 27 H 0.047 0.953 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.124 0.876 35 H 0.120 0.880 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.059 0.941 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.608 -19.109 -7.292 21.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.365 5.365 10 C 0.069 3.931 11 C -0.177 4.177 12 C -0.007 4.007 13 N -0.341 5.341 14 C 0.302 3.698 15 O -0.427 6.427 16 C -0.172 4.172 17 C -0.073 4.073 18 H 0.108 0.892 19 C -0.155 4.155 20 C -0.204 4.204 21 C -0.135 4.135 22 C -0.160 4.160 23 C -0.017 4.017 24 C -0.192 4.192 25 H 0.065 0.935 26 H 0.217 0.783 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.142 0.858 35 H 0.138 0.862 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.078 0.922 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.386 -19.374 -6.960 21.871 hybrid contribution 0.169 1.139 0.015 1.151 sum 7.555 -18.235 -6.945 20.924 Atomic orbital electron populations 1.69672 1.05138 1.25580 1.57637 1.24757 0.95507 0.97734 1.02991 0.86136 0.78770 0.84180 0.77203 1.20544 1.21890 1.21869 1.19275 0.90986 0.84083 1.42698 0.91118 1.42451 1.05824 0.99731 1.88488 1.20162 0.94431 0.86076 0.92463 1.22196 0.99193 0.94184 1.02167 1.21591 0.98627 0.97987 0.82505 1.48218 1.53884 1.15023 1.17002 1.20640 0.79626 0.81251 0.88283 1.90659 1.40594 1.46098 1.65342 1.21740 1.02620 0.98364 0.94448 1.20842 1.00838 0.92211 0.93400 0.89174 1.23306 0.97075 0.95733 0.99422 1.23232 1.01855 0.99641 0.95625 1.21326 1.00802 0.96319 0.95095 1.22569 1.01474 0.96169 0.95832 1.21957 0.94420 0.88827 0.96478 1.22750 0.99980 0.94727 1.01733 0.93530 0.78270 0.93461 0.91892 0.90641 0.89458 0.91763 0.88921 0.88665 0.85847 0.86194 0.90972 0.91445 0.90817 0.90862 0.91505 0.90436 0.92179 0.90697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.87 13.06 55.49 0.72 -27.14 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 8 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 9 N -0.72 -17.66 5.12 -53.38 -0.27 -17.93 16 10 C 0.18 3.37 2.73 -67.89 -0.19 3.19 16 11 C -0.14 -2.29 5.55 -26.61 -0.15 -2.44 16 12 C 0.12 1.67 6.43 -3.71 -0.02 1.64 16 13 N -0.61 -8.35 2.97 -172.50 -0.51 -8.86 16 14 C 0.51 7.11 7.50 -10.99 -0.08 7.03 16 15 O -0.55 -9.24 14.33 5.56 0.08 -9.16 16 16 C -0.13 -1.36 3.44 -27.89 -0.10 -1.46 16 17 C -0.05 -0.57 2.52 -90.71 -0.23 -0.79 16 18 H 0.09 1.08 7.90 -51.93 -0.41 0.67 16 19 C -0.14 -1.50 9.26 -35.70 -0.33 -1.83 16 20 C -0.19 -1.73 10.78 -35.70 -0.38 -2.12 16 21 C -0.10 -0.79 6.81 -26.83 -0.18 -0.97 16 22 C -0.12 -1.00 6.71 -25.00 -0.17 -1.17 16 23 C 0.11 1.33 6.37 -3.49 -0.02 1.31 16 24 C -0.15 -2.45 5.67 -26.39 -0.15 -2.60 16 25 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.38 10.09 7.80 -40.82 -0.32 9.77 16 27 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.09 1.31 7.01 -51.93 -0.36 0.94 16 31 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 32 H 0.09 0.82 7.92 -51.93 -0.41 0.41 16 33 H 0.10 0.88 7.70 -51.93 -0.40 0.48 16 34 H 0.12 1.50 7.58 -52.49 -0.40 1.10 16 35 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.54 7.91 -51.93 -0.41 0.13 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.08 0.78 5.93 -51.93 -0.31 0.47 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 340.85 15.07 5.14 5.14 Total: -1.00 -31.04 340.85 -9.33 -40.37 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -7.21 Total: 7.91 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -2.25 Total: -7.29 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: -0.06 Total: -53.94 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.08 Total: -9.16 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.04 -9.33 -40.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989914640.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.376 kcal (2) G-P(sol) polarization free energy of solvation -31.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds