Wall clock time and date at job start Tue Mar 31 2020 00:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99706 * 2 1 4 4 H 1.48501 * 109.47052 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46748 * 299.99689 * 3 2 1 6 6 H 1.48498 * 109.47104 * 59.99572 * 3 2 1 7 7 C 1.38809 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99633 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00456 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00205 * 180.02562 * 9 7 2 11 11 C 1.53048 * 109.45832 * 205.00150 * 10 9 7 12 12 C 1.53196 * 109.30949 * 178.61289 * 11 10 9 13 13 N 1.46927 * 108.77609 * 54.63444 * 12 11 10 14 14 C 1.34774 * 120.63299 * 126.36621 * 13 12 11 15 15 O 1.21284 * 119.99810 * 0.02562 * 14 13 12 16 16 C 1.50693 * 120.00159 * 179.97438 * 14 13 12 17 17 C 1.53000 * 109.47320 * 180.02562 * 16 14 13 18 18 H 1.09005 * 110.34587 * 307.29545 * 17 16 14 19 19 C 1.51100 * 110.48430 * 69.63892 * 17 16 14 20 20 C 1.30724 * 111.14096 * 135.39640 * 19 17 16 21 21 C 1.51106 * 110.98690 * 359.84700 * 20 19 17 22 22 C 1.54630 * 110.39024 * 185.00318 * 17 16 14 23 23 C 1.46927 * 118.73716 * 306.64103 * 13 12 11 24 24 C 1.52760 * 109.00939 * 53.31001 * 23 13 12 25 25 H 0.96998 * 120.00258 * 0.02562 * 1 2 3 26 26 H 0.97006 * 119.99661 * 0.02562 * 9 7 2 27 27 H 1.08999 * 109.44603 * 324.96278 * 10 9 7 28 28 H 1.08999 * 109.49784 * 58.65710 * 11 10 9 29 29 H 1.08998 * 109.52237 * 298.57662 * 11 10 9 30 30 H 1.09000 * 109.58240 * 294.84409 * 12 11 10 31 31 H 1.08998 * 109.57864 * 174.41921 * 12 11 10 32 32 H 1.08998 * 109.46960 * 60.00682 * 16 14 13 33 33 H 1.08994 * 109.47434 * 300.00383 * 16 14 13 34 34 H 1.08004 * 124.45196 * 315.31945 * 19 17 16 35 35 H 1.08003 * 124.56566 * 179.97438 * 20 19 17 36 36 H 1.09002 * 110.38747 * 224.83749 * 21 20 19 37 37 H 1.09000 * 110.38500 * 102.57217 * 21 20 19 38 38 H 1.09003 * 111.03946 * 98.41034 * 22 17 16 39 39 H 1.09001 * 111.07005 * 334.48878 * 22 17 16 40 40 H 1.08994 * 109.58789 * 173.14373 * 23 13 12 41 41 H 1.09003 * 109.58585 * 293.57290 * 23 13 12 42 42 H 1.09002 * 109.56676 * 185.55418 * 24 23 13 43 43 H 1.08995 * 109.38617 * 65.51501 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0017 11 6 1.1810 -4.7525 -0.6084 12 6 1.9627 -6.0697 -0.6373 13 7 2.4411 -6.3656 0.7200 14 6 2.1720 -7.5522 1.2996 15 8 1.5296 -8.3881 0.6999 16 6 2.6703 -7.8408 2.6921 17 6 2.2315 -9.2458 3.1098 18 1 1.1562 -9.3627 2.9753 19 6 2.9781 -10.2913 2.3144 20 6 3.3995 -11.2588 3.0859 21 6 3.0058 -11.0146 4.5242 22 6 2.6231 -9.5174 4.5809 23 6 3.2133 -5.3409 1.4358 24 6 2.4225 -4.0339 1.4394 25 1 -0.4850 0.8400 -0.0004 26 1 0.3556 -2.3881 -0.0002 27 1 2.9689 -3.5505 -0.5877 28 1 0.9026 -4.4722 -1.6243 29 1 0.2813 -4.8765 -0.0058 30 1 2.8134 -5.9750 -1.3122 31 1 1.3107 -6.8739 -0.9784 32 1 2.2554 -7.1092 3.3854 33 1 3.7584 -7.7805 2.7085 34 1 3.1412 -10.2462 1.2477 35 1 3.9570 -12.1177 2.7425 36 1 3.8466 -11.2170 5.1876 37 1 2.1516 -11.6353 4.7946 38 1 1.7761 -9.3550 5.2476 39 1 3.4754 -8.9067 4.8787 40 1 3.3864 -5.6643 2.4622 41 1 4.1681 -5.1855 0.9334 42 1 3.0277 -3.2422 1.8809 43 1 1.5114 -4.1640 2.0233 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989914641.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:21 Heat of formation + Delta-G solvation = -17.237324 kcal Electronic energy + Delta-G solvation = -21722.498546 eV Core-core repulsion = 18574.539921 eV Total energy + Delta-G solvation = -3147.958625 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.27699 -38.67189 -37.19128 -34.47557 -32.38339 -31.64693 -30.56267 -29.24480 -29.05106 -25.97339 -24.49900 -22.97945 -22.43540 -20.78073 -20.21682 -19.12612 -18.42598 -17.16003 -17.00346 -16.10695 -15.83416 -15.36145 -14.87559 -14.78582 -13.83982 -13.78398 -13.60609 -13.46828 -13.22345 -12.82793 -12.28930 -12.15064 -12.02312 -11.97813 -11.86417 -11.56801 -11.42129 -11.25377 -10.98528 -10.94091 -10.84802 -10.82645 -10.48686 -10.22212 -9.84069 -9.70439 -9.58747 -9.01715 -8.93732 -8.46371 -7.00490 -5.80312 -3.09645 2.17112 2.74613 3.13856 3.40201 3.45689 3.48160 4.36136 4.45434 4.55108 4.65717 4.76791 5.02506 5.10135 5.22068 5.26776 5.33017 5.36326 5.38685 5.42723 5.48941 5.52496 5.61798 5.65026 5.69779 5.72547 5.78206 5.94521 5.99854 6.01348 6.12068 6.22308 6.36441 6.38464 6.44169 6.50188 6.62948 6.78360 6.88471 7.02168 7.56158 7.66115 8.29848 8.37929 9.49176 10.06815 10.41412 11.42316 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.038024 B = 0.003170 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.200902 B = 8831.400390 C = 9172.389100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.725 5.725 10 C 0.179 3.821 11 C -0.139 4.139 12 C 0.116 3.884 13 N -0.608 5.608 14 C 0.514 3.486 15 O -0.549 6.549 16 C -0.132 4.132 17 C -0.054 4.054 18 H 0.090 0.910 19 C -0.137 4.137 20 C -0.186 4.186 21 C -0.098 4.098 22 C -0.123 4.123 23 C 0.107 3.893 24 C -0.152 4.152 25 H 0.255 0.745 26 H 0.384 0.616 27 H 0.048 0.952 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.589 -19.099 7.317 21.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.365 5.365 10 C 0.069 3.931 11 C -0.178 4.178 12 C -0.007 4.007 13 N -0.341 5.341 14 C 0.302 3.698 15 O -0.427 6.427 16 C -0.172 4.172 17 C -0.073 4.073 18 H 0.108 0.892 19 C -0.155 4.155 20 C -0.204 4.204 21 C -0.135 4.135 22 C -0.160 4.160 23 C -0.016 4.016 24 C -0.193 4.193 25 H 0.065 0.935 26 H 0.217 0.783 27 H 0.066 0.934 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.111 0.889 34 H 0.142 0.858 35 H 0.138 0.862 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.371 -19.365 6.984 21.866 hybrid contribution 0.160 1.145 -0.010 1.156 sum 7.531 -18.220 6.974 20.913 Atomic orbital electron populations 1.69673 1.05133 1.25584 1.57643 1.24758 0.95506 0.97733 1.02990 0.86136 0.78768 0.84182 0.77204 1.20544 1.21869 1.21888 1.19274 0.90987 0.84083 1.42693 0.91118 1.42452 1.05824 0.99731 1.88482 1.20159 0.94443 0.86082 0.92430 1.22204 0.99199 0.94199 1.02179 1.21594 0.98641 0.97986 0.82500 1.48214 1.54245 1.14887 1.16755 1.20639 0.79578 0.81284 0.88285 1.90662 1.40594 1.46076 1.65359 1.21737 1.02639 0.98358 0.94434 1.20832 1.00841 0.92199 0.93405 0.89189 1.23355 0.97079 0.95679 0.99412 1.23282 1.01874 0.99614 0.95605 1.21324 1.00815 0.96296 0.95114 1.22566 1.01487 0.96158 0.95825 1.21772 0.94629 0.88770 0.96425 1.22598 1.00113 0.94815 1.01790 0.93529 0.78270 0.93450 0.90632 0.91898 0.91738 0.89440 0.88663 0.88913 0.85847 0.86151 0.91461 0.90990 0.90818 0.90864 0.90457 0.91552 0.90616 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.87 13.06 55.49 0.72 -27.14 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 7 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.72 -17.66 5.12 -53.39 -0.27 -17.93 16 10 C 0.18 3.38 2.73 -67.89 -0.19 3.19 16 11 C -0.14 -2.29 5.55 -26.61 -0.15 -2.44 16 12 C 0.12 1.67 6.43 -3.71 -0.02 1.64 16 13 N -0.61 -8.35 2.98 -173.03 -0.52 -8.86 16 14 C 0.51 7.11 7.50 -10.99 -0.08 7.03 16 15 O -0.55 -9.23 14.33 5.55 0.08 -9.15 16 16 C -0.13 -1.36 3.45 -27.89 -0.10 -1.46 16 17 C -0.05 -0.56 2.51 -90.72 -0.23 -0.79 16 18 H 0.09 1.08 7.90 -51.93 -0.41 0.67 16 19 C -0.14 -1.50 9.27 -35.75 -0.33 -1.83 16 20 C -0.19 -1.73 10.79 -35.75 -0.39 -2.12 16 21 C -0.10 -0.79 6.80 -26.82 -0.18 -0.97 16 22 C -0.12 -1.00 6.71 -25.01 -0.17 -1.17 16 23 C 0.11 1.34 6.31 -3.93 -0.02 1.32 16 24 C -0.15 -2.47 5.64 -26.84 -0.15 -2.62 16 25 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.38 10.09 7.80 -40.82 -0.32 9.77 16 27 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 28 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.09 1.31 7.01 -51.93 -0.36 0.95 16 32 H 0.10 0.88 7.68 -51.93 -0.40 0.48 16 33 H 0.09 0.82 7.94 -51.93 -0.41 0.41 16 34 H 0.12 1.50 7.59 -52.48 -0.40 1.10 16 35 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.54 7.92 -51.93 -0.41 0.12 16 40 H 0.08 0.78 5.93 -51.93 -0.31 0.47 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 340.81 15.07 5.14 5.14 Total: -1.00 -31.04 340.81 -9.34 -40.38 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -7.21 Total: 7.92 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -2.25 Total: -7.31 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: -0.06 Total: -53.94 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.08 Total: -9.15 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.04 -9.34 -40.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989914641.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.140 kcal (2) G-P(sol) polarization free energy of solvation -31.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds