Wall clock time and date at job start Tue Mar 31 2020 00:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99634 * 2 1 4 4 H 1.48502 * 109.47122 * 269.99833 * 3 2 1 5 5 H 1.48494 * 109.47537 * 30.00095 * 3 2 1 6 6 H 1.48504 * 109.46859 * 150.00613 * 3 2 1 7 7 C 1.38812 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99971 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99843 * 359.97438 * 7 2 1 10 10 C 1.46493 * 119.99724 * 180.02562 * 9 7 2 11 11 C 1.53077 * 109.45415 * 84.79074 * 10 9 7 12 12 C 1.53192 * 109.29797 * 181.24124 * 11 10 9 13 13 N 1.46926 * 108.89008 * 305.57684 * 12 11 10 14 14 C 1.34777 * 120.63011 * 233.55303 * 13 12 11 15 15 O 1.21275 * 119.99729 * 355.35465 * 14 13 12 16 16 C 1.50704 * 119.99675 * 175.34718 * 14 13 12 17 17 H 1.08997 * 109.63823 * 34.96820 * 16 14 13 18 18 C 1.53023 * 109.63784 * 155.39032 * 16 14 13 19 19 C 1.50073 * 110.14373 * 169.12226 * 18 16 14 20 20 C 1.29441 * 124.07436 * 342.86112 * 19 18 16 21 21 C 1.50063 * 124.07601 * 0.50003 * 20 19 18 22 22 C 1.53029 * 110.14225 * 342.82487 * 21 20 19 23 23 C 1.46924 * 118.73914 * 53.54145 * 13 12 11 24 24 C 1.53043 * 109.46008 * 205.00115 * 10 9 7 25 25 H 0.96999 * 120.00716 * 359.97438 * 1 2 3 26 26 H 0.96997 * 119.99580 * 0.02562 * 9 7 2 27 27 H 1.09006 * 109.46475 * 324.97631 * 10 9 7 28 28 H 1.08999 * 109.38668 * 61.36073 * 11 10 9 29 29 H 1.09000 * 109.62126 * 301.26256 * 11 10 9 30 30 H 1.08995 * 109.58219 * 185.71945 * 12 11 10 31 31 H 1.09000 * 109.58441 * 65.43714 * 12 11 10 32 32 H 1.09000 * 109.35800 * 289.32751 * 18 16 14 33 33 H 1.09003 * 109.36032 * 49.05103 * 18 16 14 34 34 H 1.07994 * 117.95881 * 162.89191 * 19 18 16 35 35 H 1.08001 * 117.95768 * 180.46953 * 20 19 18 36 36 H 1.08999 * 109.35996 * 103.05272 * 21 20 19 37 37 H 1.09001 * 109.35652 * 222.76838 * 21 20 19 38 38 H 1.08996 * 109.66148 * 289.78044 * 22 21 20 39 39 H 1.09002 * 109.63968 * 169.13943 * 22 21 20 40 40 H 1.09007 * 109.58831 * 66.16950 * 23 13 12 41 41 H 1.08994 * 109.58809 * 186.45863 * 23 13 12 42 42 H 1.09001 * 109.49291 * 58.66491 * 24 10 9 43 43 H 1.08997 * 109.52231 * 298.58523 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 2.4266 -4.0327 1.4369 12 6 3.2191 -5.3436 1.4300 13 7 2.4416 -6.3659 0.7164 14 6 2.1730 -7.5528 1.2956 15 8 2.6443 -7.8183 2.3810 16 6 1.2868 -8.5500 0.5944 17 1 1.4510 -8.4928 -0.4816 18 6 1.6087 -9.9616 1.0898 19 6 0.5681 -10.9288 0.6062 20 6 -0.5952 -10.5789 0.1590 21 6 -1.0618 -9.1567 0.0516 22 6 -0.1828 -8.2473 0.9131 23 6 1.9622 -6.0694 -0.6404 24 6 1.1806 -4.7522 -0.6104 25 1 -0.4851 0.8400 0.0004 26 1 0.3556 -2.3880 -0.0005 27 1 2.9686 -3.5504 -0.5904 28 1 1.5160 -4.1611 2.0220 29 1 3.0343 -3.2424 1.8776 30 1 3.3963 -5.6688 2.4551 31 1 4.1730 -5.1913 0.9249 32 1 2.5856 -10.2631 0.7119 33 1 1.6255 -9.9670 2.1797 34 1 0.8044 -11.9822 0.6334 35 1 -1.2718 -11.3592 -0.1569 36 1 -1.0046 -8.8353 -0.9883 37 1 -2.0941 -9.0883 0.3946 38 1 -0.3767 -8.4421 1.9679 39 1 -0.4000 -7.2040 0.6841 40 1 2.8125 -5.9744 -1.3158 41 1 1.3121 -6.8747 -0.9823 42 1 0.9015 -4.4715 -1.6260 43 1 0.2813 -4.8765 -0.0072 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989934178.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:38 Heat of formation + Delta-G solvation = -22.642782 kcal Electronic energy + Delta-G solvation = -22207.160511 eV Core-core repulsion = 19058.967488 eV Total energy + Delta-G solvation = -3148.193023 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.49601 -38.20437 -37.08760 -34.50279 -32.25716 -31.60847 -30.90433 -30.47115 -29.18874 -25.20047 -24.07614 -23.15605 -22.72610 -22.22386 -20.20428 -18.77835 -18.16377 -17.21776 -16.88112 -16.30068 -15.37669 -15.15541 -14.82865 -14.32289 -13.96991 -13.75292 -13.61108 -13.55265 -13.26737 -13.06711 -12.82766 -12.64894 -12.46422 -12.26110 -11.96669 -11.51001 -11.12514 -10.98641 -10.93135 -10.88249 -10.81567 -10.50106 -10.42762 -10.25187 -9.91762 -9.71556 -9.48283 -9.15255 -8.92294 -8.47400 -6.99658 -5.79693 -3.08834 2.09457 2.69427 3.11239 3.41488 3.47038 3.48521 4.35365 4.50426 4.56201 4.66316 4.82037 4.97322 5.06340 5.11764 5.21187 5.28061 5.33571 5.37225 5.45483 5.47831 5.58027 5.64437 5.68259 5.75339 5.78870 5.84411 5.90595 5.94457 6.01569 6.09632 6.22206 6.29210 6.42788 6.43791 6.54223 6.60847 6.74672 6.91804 7.03440 7.54572 7.67126 8.27552 8.38705 9.50012 10.07080 10.41704 11.42884 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033599 B = 0.003676 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.151902 B = 7614.925821 C = 8123.031269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.179 3.821 11 C -0.149 4.149 12 C 0.112 3.888 13 N -0.605 5.605 14 C 0.519 3.481 15 O -0.549 6.549 16 C -0.107 4.107 17 H 0.095 0.905 18 C -0.077 4.077 19 C -0.152 4.152 20 C -0.160 4.160 21 C -0.089 4.089 22 C -0.109 4.109 23 C 0.108 3.892 24 C -0.139 4.139 25 H 0.255 0.745 26 H 0.383 0.617 27 H 0.047 0.953 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.554 -20.324 -1.959 20.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.365 5.365 10 C 0.069 3.931 11 C -0.190 4.190 12 C -0.011 4.011 13 N -0.337 5.337 14 C 0.307 3.693 15 O -0.427 6.427 16 C -0.129 4.129 17 H 0.113 0.887 18 C -0.114 4.114 19 C -0.170 4.170 20 C -0.178 4.178 21 C -0.126 4.126 22 C -0.147 4.147 23 C -0.016 4.016 24 C -0.178 4.178 25 H 0.065 0.935 26 H 0.217 0.783 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.101 0.899 42 H 0.095 0.905 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.928 -20.288 -1.393 20.357 hybrid contribution 0.094 1.002 -0.058 1.008 sum 1.022 -19.286 -1.451 19.368 Atomic orbital electron populations 1.69655 1.05122 1.25691 1.57630 1.24742 0.95503 0.97702 1.02948 0.86206 0.78688 0.83886 0.77509 1.21721 1.21790 1.20745 1.19234 0.90986 0.84093 1.42775 0.91174 1.42424 1.05771 0.99718 1.88553 1.20167 0.94339 0.86009 0.92615 1.22664 1.00125 0.94867 1.01366 1.21689 0.93866 0.87851 0.97668 1.48173 1.53910 1.14940 1.16717 1.20548 0.80763 0.82261 0.85734 1.90651 1.52925 1.77423 1.21706 1.21401 0.95738 0.94568 1.01159 0.88736 1.20328 0.97632 0.91187 1.02248 1.22053 0.95383 0.99387 1.00150 1.22059 0.97019 0.97456 1.01261 1.20456 0.99484 0.92314 1.00373 1.21561 0.91924 1.00235 1.00980 1.21849 0.98732 0.98196 0.82794 1.22205 0.99190 0.94171 1.02246 0.93498 0.78295 0.93473 0.92350 0.90730 0.89813 0.91928 0.90911 0.89299 0.87796 0.87976 0.90543 0.90598 0.90972 0.90683 0.91283 0.89910 0.90480 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.79 13.06 55.49 0.72 -27.06 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.72 -17.56 5.12 -53.37 -0.27 -17.83 16 10 C 0.18 3.36 2.73 -67.87 -0.19 3.17 16 11 C -0.15 -2.64 5.67 -26.59 -0.15 -2.79 16 12 C 0.11 1.70 6.41 -3.71 -0.02 1.68 16 13 N -0.60 -8.41 2.97 -172.77 -0.51 -8.92 16 14 C 0.52 7.40 6.82 -10.98 -0.07 7.33 16 15 O -0.55 -9.66 15.30 5.56 0.09 -9.58 16 16 C -0.11 -1.17 1.73 -91.55 -0.16 -1.32 16 17 H 0.09 0.89 6.26 -51.93 -0.33 0.56 16 18 C -0.08 -0.80 5.17 -28.17 -0.15 -0.94 16 19 C -0.15 -1.34 9.80 -35.90 -0.35 -1.70 16 20 C -0.16 -1.34 9.80 -35.90 -0.35 -1.69 16 21 C -0.09 -0.74 6.12 -28.18 -0.17 -0.92 16 22 C -0.11 -1.12 5.19 -26.51 -0.14 -1.26 16 23 C 0.11 1.28 6.27 -3.71 -0.02 1.26 16 24 C -0.14 -2.07 5.55 -26.61 -0.15 -2.22 16 25 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.38 9.93 7.80 -40.82 -0.32 9.61 16 27 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.08 1.34 7.03 -51.93 -0.37 0.98 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 1.07 7.46 -51.93 -0.39 0.68 16 34 H 0.10 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.10 0.72 8.06 -52.49 -0.42 0.30 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.82 8.12 -51.93 -0.42 0.39 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 41 H 0.08 0.79 5.40 -51.93 -0.28 0.51 16 42 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 337.85 15.07 5.09 5.09 Total: -1.00 -31.15 337.85 -9.22 -40.36 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -7.14 Total: 7.35 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -2.17 Total: -6.51 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: -0.06 Total: -53.82 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.15 -9.22 -40.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989934178.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.718 kcal (2) G-P(sol) polarization free energy of solvation -31.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds