Wall clock time and date at job start Tue Mar 31 2020 00:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99634 * 2 1 4 4 H 1.48502 * 109.47122 * 269.99833 * 3 2 1 5 5 H 1.48494 * 109.47537 * 30.00095 * 3 2 1 6 6 H 1.48504 * 109.46859 * 150.00613 * 3 2 1 7 7 C 1.38812 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99971 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99843 * 359.97438 * 7 2 1 10 10 C 1.46493 * 119.99724 * 180.02562 * 9 7 2 11 11 C 1.53077 * 109.45415 * 84.79074 * 10 9 7 12 12 C 1.53192 * 109.29797 * 181.24124 * 11 10 9 13 13 N 1.46926 * 108.89008 * 305.57684 * 12 11 10 14 14 C 1.34777 * 120.63011 * 233.55303 * 13 12 11 15 15 O 1.21275 * 119.99729 * 355.35465 * 14 13 12 16 16 C 1.50704 * 119.99675 * 175.34718 * 14 13 12 17 17 H 1.08997 * 109.63823 * 34.96820 * 16 14 13 18 18 C 1.53023 * 109.63784 * 155.39032 * 16 14 13 19 19 C 1.50073 * 110.14373 * 169.12226 * 18 16 14 20 20 C 1.29441 * 124.07436 * 342.86112 * 19 18 16 21 21 C 1.50063 * 124.07601 * 0.50003 * 20 19 18 22 22 C 1.53029 * 110.14225 * 342.82487 * 21 20 19 23 23 C 1.46924 * 118.73914 * 53.54145 * 13 12 11 24 24 C 1.53043 * 109.46008 * 205.00115 * 10 9 7 25 25 H 0.96999 * 120.00716 * 359.97438 * 1 2 3 26 26 H 0.96997 * 119.99580 * 0.02562 * 9 7 2 27 27 H 1.09006 * 109.46475 * 324.97631 * 10 9 7 28 28 H 1.08999 * 109.38668 * 61.36073 * 11 10 9 29 29 H 1.09000 * 109.62126 * 301.26256 * 11 10 9 30 30 H 1.08995 * 109.58219 * 185.71945 * 12 11 10 31 31 H 1.09000 * 109.58441 * 65.43714 * 12 11 10 32 32 H 1.09000 * 109.35800 * 289.32751 * 18 16 14 33 33 H 1.09003 * 109.36032 * 49.05103 * 18 16 14 34 34 H 1.07994 * 117.95881 * 162.89191 * 19 18 16 35 35 H 1.08001 * 117.95768 * 180.46953 * 20 19 18 36 36 H 1.08999 * 109.35996 * 103.05272 * 21 20 19 37 37 H 1.09001 * 109.35652 * 222.76838 * 21 20 19 38 38 H 1.08996 * 109.66148 * 289.78044 * 22 21 20 39 39 H 1.09002 * 109.63968 * 169.13943 * 22 21 20 40 40 H 1.09007 * 109.58831 * 66.16950 * 23 13 12 41 41 H 1.08994 * 109.58809 * 186.45863 * 23 13 12 42 42 H 1.09001 * 109.49291 * 58.66491 * 24 10 9 43 43 H 1.08997 * 109.52231 * 298.58523 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 2.4266 -4.0327 1.4369 12 6 3.2191 -5.3436 1.4300 13 7 2.4416 -6.3659 0.7164 14 6 2.1730 -7.5528 1.2956 15 8 2.6443 -7.8183 2.3810 16 6 1.2868 -8.5500 0.5944 17 1 1.4510 -8.4928 -0.4816 18 6 1.6087 -9.9616 1.0898 19 6 0.5681 -10.9288 0.6062 20 6 -0.5952 -10.5789 0.1590 21 6 -1.0618 -9.1567 0.0516 22 6 -0.1828 -8.2473 0.9131 23 6 1.9622 -6.0694 -0.6404 24 6 1.1806 -4.7522 -0.6104 25 1 -0.4851 0.8400 0.0004 26 1 0.3556 -2.3880 -0.0005 27 1 2.9686 -3.5504 -0.5904 28 1 1.5160 -4.1611 2.0220 29 1 3.0343 -3.2424 1.8776 30 1 3.3963 -5.6688 2.4551 31 1 4.1730 -5.1913 0.9249 32 1 2.5856 -10.2631 0.7119 33 1 1.6255 -9.9670 2.1797 34 1 0.8044 -11.9822 0.6334 35 1 -1.2718 -11.3592 -0.1569 36 1 -1.0046 -8.8353 -0.9883 37 1 -2.0941 -9.0883 0.3946 38 1 -0.3767 -8.4421 1.9679 39 1 -0.4000 -7.2040 0.6841 40 1 2.8125 -5.9744 -1.3158 41 1 1.3121 -6.8747 -0.9823 42 1 0.9015 -4.4715 -1.6260 43 1 0.2813 -4.8765 -0.0072 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989934178.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:37 Heat of formation + Delta-G solvation = -40.914858 kcal Electronic energy + Delta-G solvation = -22207.952848 eV Core-core repulsion = 19058.967488 eV Total energy + Delta-G solvation = -3148.985359 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.58422 -39.25640 -38.25399 -36.15916 -33.88307 -32.76682 -31.65952 -31.58074 -30.86519 -26.72972 -25.35306 -24.16702 -23.98747 -23.40592 -21.54364 -20.01449 -19.05886 -19.00127 -17.95799 -17.27111 -16.69001 -16.34008 -16.27181 -15.47527 -15.39417 -15.32525 -14.87713 -14.63713 -14.41333 -14.11748 -13.93465 -13.75810 -13.48748 -13.21230 -13.14055 -13.01100 -12.84003 -12.63700 -12.20262 -12.17499 -11.99411 -11.89120 -11.77147 -11.68188 -11.38755 -11.21331 -10.89678 -10.60217 -9.82390 -9.67711 -9.00439 -7.93749 -5.21973 1.44513 1.47897 1.48779 1.56937 1.58559 2.01088 2.56530 3.39081 3.43208 3.71309 3.83634 3.84711 3.84989 4.07939 4.14864 4.19234 4.28247 4.38041 4.40660 4.43882 4.46968 4.61824 4.64135 4.74907 4.80045 4.82742 4.86759 4.97262 5.01519 5.01986 5.08466 5.12155 5.26146 5.30042 5.36282 5.49449 5.54265 5.61125 5.79391 6.09464 6.28632 6.43494 7.14805 7.34926 8.11115 8.33676 9.29660 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033599 B = 0.003676 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.151902 B = 7614.925821 C = 8123.031269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.969 3.031 4 H -0.286 1.286 5 H -0.299 1.299 6 H -0.271 1.271 7 C -0.237 4.237 8 H 0.075 0.925 9 N -0.737 5.737 10 C 0.173 3.827 11 C -0.137 4.137 12 C 0.121 3.879 13 N -0.606 5.606 14 C 0.515 3.485 15 O -0.588 6.588 16 C -0.100 4.100 17 H 0.119 0.881 18 C -0.075 4.075 19 C -0.162 4.162 20 C -0.156 4.156 21 C -0.088 4.088 22 C -0.108 4.108 23 C 0.113 3.887 24 C -0.129 4.129 25 H 0.250 0.750 26 H 0.372 0.628 27 H 0.049 0.951 28 H 0.039 0.961 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.054 0.946 39 H 0.070 0.930 40 H 0.089 0.911 41 H 0.115 0.885 42 H 0.083 0.917 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.912 -21.915 -3.593 22.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.798 3.202 4 H -0.213 1.213 5 H -0.225 1.225 6 H -0.196 1.196 7 C -0.369 4.369 8 H 0.093 0.907 9 N -0.376 5.376 10 C 0.064 3.936 11 C -0.178 4.178 12 C -0.003 4.003 13 N -0.338 5.338 14 C 0.305 3.695 15 O -0.469 6.469 16 C -0.121 4.121 17 H 0.137 0.863 18 C -0.112 4.112 19 C -0.180 4.180 20 C -0.174 4.174 21 C -0.125 4.125 22 C -0.146 4.146 23 C -0.009 4.009 24 C -0.168 4.168 25 H 0.059 0.941 26 H 0.204 0.796 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.111 0.889 37 H 0.103 0.897 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.107 0.893 41 H 0.133 0.867 42 H 0.101 0.899 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.320 -21.918 -3.045 22.168 hybrid contribution -0.002 1.449 0.490 1.530 sum 1.317 -20.469 -2.555 20.669 Atomic orbital electron populations 1.69805 1.06549 1.25929 1.59765 1.25511 0.96317 1.00940 1.04015 0.85207 0.77694 0.79842 0.77441 1.21299 1.22538 1.19604 1.19610 0.91401 0.85251 1.40620 0.90662 1.42643 1.05437 1.00978 1.88548 1.20430 0.94702 0.85193 0.93242 1.22445 0.99284 0.95874 1.00168 1.21484 0.94252 0.86762 0.97786 1.48260 1.53560 1.14556 1.17384 1.21212 0.80404 0.82618 0.85303 1.90635 1.54432 1.78251 1.23542 1.21442 0.95099 0.93625 1.01972 0.86297 1.20279 0.98668 0.91434 1.00865 1.22066 0.95295 0.99686 1.00964 1.22254 0.96909 0.97890 1.00352 1.20495 0.99349 0.91836 1.00787 1.21550 0.91956 1.00601 1.00513 1.21986 0.99666 0.97373 0.81912 1.22081 0.98501 0.94302 1.01930 0.94128 0.79634 0.93324 0.94229 0.92588 0.90913 0.90257 0.90540 0.91684 0.86449 0.86176 0.88884 0.89735 0.92747 0.91089 0.89325 0.86662 0.89869 0.92446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.76 13.06 21.65 0.28 -58.48 16 2 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16 3 Si 0.97 45.74 29.55 68.60 2.03 47.77 16 4 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 5 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.24 -12.86 9.93 84.03 0.83 -12.02 16 8 H 0.08 3.93 7.83 -2.91 -0.02 3.90 16 9 N -0.74 -35.94 5.12 -322.75 -1.65 -37.60 16 10 C 0.17 6.36 2.73 45.03 0.12 6.49 16 11 C -0.14 -4.86 5.67 30.68 0.17 -4.69 16 12 C 0.12 3.57 6.41 86.36 0.55 4.13 16 13 N -0.61 -15.81 2.97 -818.91 -2.44 -18.25 16 14 C 0.51 14.10 6.82 87.66 0.60 14.70 16 15 O -0.59 -20.78 15.30 -3.02 -0.05 -20.83 16 16 C -0.10 -1.97 1.73 -11.40 -0.02 -1.99 16 17 H 0.12 1.75 6.26 -2.39 -0.01 1.74 16 18 C -0.08 -1.46 5.17 29.66 0.15 -1.30 16 19 C -0.16 -2.49 9.80 27.04 0.27 -2.23 16 20 C -0.16 -2.13 9.80 27.04 0.27 -1.87 16 21 C -0.09 -1.20 6.12 29.66 0.18 -1.02 16 22 C -0.11 -2.03 5.19 30.74 0.16 -1.87 16 23 C 0.11 2.34 6.27 86.36 0.54 2.88 16 24 C -0.13 -3.62 5.55 30.67 0.17 -3.45 16 25 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 26 H 0.37 19.61 7.80 -92.71 -0.72 18.89 16 27 H 0.05 1.79 8.08 -2.38 -0.02 1.77 16 28 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.07 2.35 7.03 -2.39 -0.02 2.33 16 31 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.08 1.39 8.14 -2.39 -0.02 1.38 16 33 H 0.06 1.57 7.46 -2.39 -0.02 1.55 16 34 H 0.12 1.47 8.06 -2.91 -0.02 1.45 16 35 H 0.12 1.25 8.06 -2.91 -0.02 1.23 16 36 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.05 1.21 8.12 -2.39 -0.02 1.19 16 39 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 41 H 0.12 1.70 5.40 -2.39 -0.01 1.68 16 42 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -68.18 337.85 2.90 -65.28 By element: Atomic # 1 Polarization: 27.91 SS G_CDS: 0.26 Total: 28.17 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: 4.47 Total: -6.07 kcal Atomic # 7 Polarization: -110.51 SS G_CDS: -3.81 Total: -114.32 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.05 Total: -20.83 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -68.18 2.90 -65.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989934178.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.362 kcal (2) G-P(sol) polarization free energy of solvation -68.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds