Wall clock time and date at job start Tue Mar 31 2020 00:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00245 * 2 1 4 4 H 1.48499 * 109.47446 * 270.00562 * 3 2 1 5 5 H 1.48505 * 109.47299 * 30.00342 * 3 2 1 6 6 H 1.48504 * 109.47129 * 150.00441 * 3 2 1 7 7 C 1.38816 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99983 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99833 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99739 * 180.02562 * 9 7 2 11 11 H 1.09001 * 108.04656 * 37.89069 * 10 9 7 12 12 C 1.50414 * 107.73219 * 281.22628 * 10 9 7 13 13 C 1.52651 * 110.70994 * 191.37333 * 12 10 9 14 14 C 1.52865 * 108.65410 * 59.69756 * 13 12 10 15 15 C 1.52892 * 109.62643 * 295.05087 * 14 13 12 16 16 H 1.08998 * 111.42454 * 290.29374 * 15 14 13 17 17 C 1.55063 * 107.38309 * 166.75542 * 15 14 13 18 18 N 1.47072 * 105.85651 * 274.20851 * 17 15 14 19 19 C 1.34779 * 125.43890 * 160.67081 * 18 17 15 20 20 O 1.21277 * 119.99629 * 179.69518 * 19 18 17 21 21 C 1.50701 * 120.00109 * 359.70021 * 19 18 17 22 22 C 1.52996 * 117.49472 * 248.61590 * 21 19 18 23 23 C 1.52999 * 60.00108 * 252.51208 * 22 21 19 24 24 C 1.47136 * 109.11419 * 340.41022 * 18 17 15 25 25 C 1.49685 * 108.30094 * 154.99825 * 10 9 7 26 26 H 1.09005 * 107.66520 * 280.47262 * 25 10 9 27 27 H 0.97001 * 119.99939 * 359.97438 * 1 2 3 28 28 H 0.97000 * 120.00397 * 359.97438 * 9 7 2 29 29 H 1.08996 * 109.37005 * 71.00627 * 12 10 9 30 30 H 1.09000 * 109.15331 * 311.59895 * 12 10 9 31 31 H 1.09001 * 109.60905 * 299.94577 * 13 12 10 32 32 H 1.09004 * 109.60641 * 179.44503 * 13 12 10 33 33 H 1.08994 * 109.44825 * 175.00051 * 14 13 12 34 34 H 1.09004 * 109.44162 * 55.09813 * 14 13 12 35 35 H 1.08998 * 110.17260 * 155.11442 * 17 15 14 36 36 H 1.09001 * 110.17073 * 33.30908 * 17 15 14 37 37 H 1.09000 * 115.55014 * 34.32582 * 21 19 18 38 38 H 1.09006 * 117.50348 * 0.02562 * 22 21 19 39 39 H 1.09003 * 117.49463 * 145.02044 * 22 21 19 40 40 H 1.08995 * 117.49662 * 252.51438 * 23 22 21 41 41 H 1.08999 * 117.51466 * 107.48117 * 23 22 21 42 42 H 1.09000 * 109.97597 * 118.85557 * 24 18 17 43 43 H 1.08997 * 109.97516 * 240.09912 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 1 2.9351 -3.5404 0.6360 12 6 2.5286 -3.9142 -1.4058 13 6 3.0530 -5.3408 -1.5468 14 6 1.9254 -6.3128 -1.1999 15 6 1.5465 -6.1552 0.2729 16 1 2.3348 -6.5248 0.9286 17 6 0.2019 -6.8973 0.4874 18 7 -0.8504 -5.9321 0.1351 19 6 -2.1240 -6.2437 -0.1770 20 8 -2.9144 -5.3646 -0.4476 21 6 -2.5658 -7.6844 -0.1895 22 6 -2.9088 -8.3063 -1.5447 23 6 -4.0241 -7.9729 -0.5517 24 6 -0.2923 -4.5716 0.1840 25 6 1.1775 -4.7079 0.6001 26 1 1.2207 -4.5960 1.6835 27 1 -0.4850 0.8401 0.0004 28 1 0.3555 -2.3881 0.0002 29 1 3.3254 -3.2132 -1.6542 30 1 1.6959 -3.7688 -2.0940 31 1 3.8893 -5.4922 -0.8643 32 1 3.3797 -5.5107 -2.5728 33 1 2.2583 -7.3346 -1.3816 34 1 1.0570 -6.0984 -1.8229 35 1 0.1013 -7.1993 1.5298 36 1 0.1457 -7.7692 -0.1643 37 1 -2.0955 -8.3269 0.5549 38 1 -2.8145 -7.6735 -2.4273 39 1 -2.6640 -9.3582 -1.6921 40 1 -4.5130 -8.8055 -0.0459 41 1 -4.6639 -7.1207 -0.7805 42 1 -0.3594 -4.1060 -0.7992 43 1 -0.8335 -3.9732 0.9169 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992563584.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:37 Heat of formation + Delta-G solvation = -2.320883 kcal Electronic energy + Delta-G solvation = -22689.750470 eV Core-core repulsion = 19542.438670 eV Total energy + Delta-G solvation = -3147.311799 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.57007 -38.95001 -36.15253 -35.45963 -33.92113 -31.63921 -30.75800 -28.84629 -26.86907 -25.41628 -23.68872 -22.86479 -22.52824 -21.51506 -20.81346 -18.95678 -18.32025 -17.53621 -16.90149 -15.85779 -15.53256 -15.18989 -14.90594 -14.48503 -13.94767 -13.71652 -13.58375 -13.27269 -13.06556 -12.75684 -12.64516 -12.18135 -11.94923 -11.78600 -11.66567 -11.33667 -10.99276 -10.96188 -10.84715 -10.79337 -10.72651 -10.59382 -10.24801 -10.13575 -9.87544 -9.66837 -9.59215 -9.50728 -8.83585 -8.39777 -6.92993 -5.72307 -3.02179 2.61105 3.09081 3.45634 3.50385 3.52586 3.78868 4.42699 4.54314 4.61529 4.66919 4.77377 4.84451 4.86987 5.04384 5.30829 5.37966 5.42275 5.43756 5.48337 5.60154 5.60712 5.67866 5.77822 5.78351 5.81099 5.85362 5.99497 6.01056 6.08818 6.16242 6.28653 6.39601 6.44279 6.49243 6.53372 6.64236 6.76791 6.95808 7.20157 7.70836 7.73004 8.35361 8.45540 9.56438 10.13013 10.47164 11.50062 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020522 B = 0.004967 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.092776 B = 5635.949410 C = 6604.403655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.189 3.811 11 H 0.042 0.958 12 C -0.128 4.128 13 C -0.118 4.118 14 C -0.110 4.110 15 C -0.089 4.089 16 H 0.094 0.906 17 C 0.104 3.896 18 N -0.610 5.610 19 C 0.551 3.449 20 O -0.537 6.537 21 C -0.188 4.188 22 C -0.153 4.153 23 C -0.150 4.150 24 C 0.118 3.882 25 C -0.087 4.087 26 H 0.070 0.930 27 H 0.255 0.745 28 H 0.385 0.615 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.120 0.880 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.108 0.892 42 H 0.076 0.924 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.643 -20.541 -0.372 20.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.374 5.374 10 C 0.080 3.920 11 H 0.060 0.940 12 C -0.168 4.168 13 C -0.156 4.156 14 C -0.147 4.147 15 C -0.108 4.108 16 H 0.112 0.888 17 C -0.020 4.020 18 N -0.344 5.344 19 C 0.339 3.661 20 O -0.414 6.414 21 C -0.209 4.209 22 C -0.191 4.191 23 C -0.187 4.187 24 C -0.003 4.003 25 C -0.107 4.107 26 H 0.089 0.911 27 H 0.065 0.935 28 H 0.220 0.780 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.138 0.862 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.126 0.874 42 H 0.094 0.906 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.245 -19.899 -0.496 19.907 hybrid contribution 0.281 0.998 0.109 1.042 sum 0.527 -18.901 -0.387 18.913 Atomic orbital electron populations 1.69667 1.05076 1.25672 1.57491 1.24741 0.95455 0.97624 1.03023 0.86227 0.78623 0.84072 0.77473 1.21788 1.21832 1.20814 1.19217 0.90938 0.84137 1.42836 0.91216 1.42728 1.05895 0.99683 1.89127 1.18883 0.93593 0.85747 0.93792 0.93975 1.21682 1.00880 0.94321 0.99954 1.21456 0.97479 0.96209 1.00439 1.21526 0.99237 0.98774 0.95166 1.21971 0.95730 0.95250 0.97894 0.88792 1.22353 0.87212 0.92452 0.99958 1.48355 1.09083 1.08825 1.68147 1.19273 0.80500 0.89513 0.76772 1.90734 1.52040 1.49729 1.48880 1.22166 1.01709 0.95033 1.02038 1.22917 1.02610 1.01285 0.92272 1.22948 0.90196 1.03609 1.01951 1.21835 0.93104 0.82457 1.02949 1.21082 0.94100 0.94135 1.01379 0.91126 0.93472 0.77952 0.92089 0.92422 0.92344 0.92706 0.92446 0.91887 0.91846 0.90758 0.86160 0.88247 0.87946 0.88064 0.87373 0.90581 0.90873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.67 13.06 55.49 0.72 -27.95 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.90 22.60 29.55 -169.99 -5.02 17.57 16 4 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 7 C -0.24 -6.63 9.76 -15.06 -0.15 -6.78 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.73 -18.13 4.88 -56.30 -0.27 -18.41 16 10 C 0.19 3.63 2.47 -70.86 -0.17 3.45 16 11 H 0.04 0.83 8.06 -51.93 -0.42 0.41 16 12 C -0.13 -2.26 5.21 -28.20 -0.15 -2.41 16 13 C -0.12 -1.56 5.94 -26.98 -0.16 -1.72 16 14 C -0.11 -1.31 4.89 -26.86 -0.13 -1.44 16 15 C -0.09 -1.06 3.40 -89.64 -0.30 -1.37 16 16 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 17 C 0.10 1.15 5.71 -2.64 -0.02 1.14 16 18 N -0.61 -9.26 3.31 -171.21 -0.57 -9.82 16 19 C 0.55 8.88 7.63 -10.98 -0.08 8.80 16 20 O -0.54 -11.11 16.57 5.56 0.09 -11.01 16 21 C -0.19 -2.13 5.31 -91.77 -0.49 -2.62 16 22 C -0.15 -1.46 10.23 -26.73 -0.27 -1.73 16 23 C -0.15 -1.53 10.04 -26.73 -0.27 -1.80 16 24 C 0.12 2.15 4.83 -3.51 -0.02 2.13 16 25 C -0.09 -1.40 2.38 -92.12 -0.22 -1.62 16 26 H 0.07 1.14 8.13 -51.93 -0.42 0.72 16 27 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 28 H 0.39 10.26 5.70 -40.82 -0.23 10.03 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.87 7.93 -51.93 -0.41 0.45 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.68 7.54 -51.93 -0.39 0.29 16 37 H 0.12 1.07 7.79 -51.93 -0.40 0.67 16 38 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.11 1.32 7.67 -51.93 -0.40 0.92 16 42 H 0.08 1.59 7.41 -51.93 -0.38 1.21 16 43 H 0.07 1.50 8.02 -51.93 -0.42 1.08 16 LS Contribution 337.78 15.07 5.09 5.09 Total: -1.00 -32.79 337.78 -9.74 -42.52 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -7.25 Total: 8.41 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -2.53 Total: -6.40 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: -0.12 Total: -56.18 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.01 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.79 -9.74 -42.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992563584.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.202 kcal (2) G-P(sol) polarization free energy of solvation -32.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds