Wall clock time and date at job start Tue Mar 31 2020 00:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00245 * 2 1 4 4 H 1.48499 * 109.47446 * 270.00562 * 3 2 1 5 5 H 1.48505 * 109.47299 * 30.00342 * 3 2 1 6 6 H 1.48504 * 109.47129 * 150.00441 * 3 2 1 7 7 C 1.38816 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99983 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99833 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99739 * 180.02562 * 9 7 2 11 11 H 1.09001 * 108.04656 * 37.89069 * 10 9 7 12 12 C 1.50414 * 107.73219 * 281.22628 * 10 9 7 13 13 C 1.52651 * 110.70994 * 191.37333 * 12 10 9 14 14 C 1.52865 * 108.65410 * 59.69756 * 13 12 10 15 15 C 1.52892 * 109.62643 * 295.05087 * 14 13 12 16 16 H 1.08998 * 111.42454 * 290.29374 * 15 14 13 17 17 C 1.55063 * 107.38309 * 166.75542 * 15 14 13 18 18 N 1.47072 * 105.85651 * 274.20851 * 17 15 14 19 19 C 1.34779 * 125.43890 * 160.67081 * 18 17 15 20 20 O 1.21277 * 119.99629 * 179.69518 * 19 18 17 21 21 C 1.50701 * 120.00109 * 359.70021 * 19 18 17 22 22 C 1.52996 * 117.49472 * 248.61590 * 21 19 18 23 23 C 1.52999 * 60.00108 * 252.51208 * 22 21 19 24 24 C 1.47136 * 109.11419 * 340.41022 * 18 17 15 25 25 C 1.49685 * 108.30094 * 154.99825 * 10 9 7 26 26 H 1.09005 * 107.66520 * 280.47262 * 25 10 9 27 27 H 0.97001 * 119.99939 * 359.97438 * 1 2 3 28 28 H 0.97000 * 120.00397 * 359.97438 * 9 7 2 29 29 H 1.08996 * 109.37005 * 71.00627 * 12 10 9 30 30 H 1.09000 * 109.15331 * 311.59895 * 12 10 9 31 31 H 1.09001 * 109.60905 * 299.94577 * 13 12 10 32 32 H 1.09004 * 109.60641 * 179.44503 * 13 12 10 33 33 H 1.08994 * 109.44825 * 175.00051 * 14 13 12 34 34 H 1.09004 * 109.44162 * 55.09813 * 14 13 12 35 35 H 1.08998 * 110.17260 * 155.11442 * 17 15 14 36 36 H 1.09001 * 110.17073 * 33.30908 * 17 15 14 37 37 H 1.09000 * 115.55014 * 34.32582 * 21 19 18 38 38 H 1.09006 * 117.50348 * 0.02562 * 22 21 19 39 39 H 1.09003 * 117.49463 * 145.02044 * 22 21 19 40 40 H 1.08995 * 117.49662 * 252.51438 * 23 22 21 41 41 H 1.08999 * 117.51466 * 107.48117 * 23 22 21 42 42 H 1.09000 * 109.97597 * 118.85557 * 24 18 17 43 43 H 1.08997 * 109.97516 * 240.09912 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 1 2.9351 -3.5404 0.6360 12 6 2.5286 -3.9142 -1.4058 13 6 3.0530 -5.3408 -1.5468 14 6 1.9254 -6.3128 -1.1999 15 6 1.5465 -6.1552 0.2729 16 1 2.3348 -6.5248 0.9286 17 6 0.2019 -6.8973 0.4874 18 7 -0.8504 -5.9321 0.1351 19 6 -2.1240 -6.2437 -0.1770 20 8 -2.9144 -5.3646 -0.4476 21 6 -2.5658 -7.6844 -0.1895 22 6 -2.9088 -8.3063 -1.5447 23 6 -4.0241 -7.9729 -0.5517 24 6 -0.2923 -4.5716 0.1840 25 6 1.1775 -4.7079 0.6001 26 1 1.2207 -4.5960 1.6835 27 1 -0.4850 0.8401 0.0004 28 1 0.3555 -2.3881 0.0002 29 1 3.3254 -3.2132 -1.6542 30 1 1.6959 -3.7688 -2.0940 31 1 3.8893 -5.4922 -0.8643 32 1 3.3797 -5.5107 -2.5728 33 1 2.2583 -7.3346 -1.3816 34 1 1.0570 -6.0984 -1.8229 35 1 0.1013 -7.1993 1.5298 36 1 0.1457 -7.7692 -0.1643 37 1 -2.0955 -8.3269 0.5549 38 1 -2.8145 -7.6735 -2.4273 39 1 -2.6640 -9.3582 -1.6921 40 1 -4.5130 -8.8055 -0.0459 41 1 -4.6639 -7.1207 -0.7805 42 1 -0.3594 -4.1060 -0.7992 43 1 -0.8335 -3.9732 0.9169 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992563584.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:37 Heat of formation + Delta-G solvation = -23.831127 kcal Electronic energy + Delta-G solvation = -22690.683224 eV Core-core repulsion = 19542.438670 eV Total energy + Delta-G solvation = -3148.244553 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.80669 -40.18655 -37.24783 -36.86453 -35.49346 -33.45926 -32.02353 -30.50614 -28.26833 -26.61294 -25.61283 -24.00172 -23.29934 -22.75504 -22.09880 -20.16331 -19.72421 -19.08882 -18.32364 -17.24403 -16.74924 -16.73794 -16.23837 -15.70682 -15.48191 -15.18359 -14.86421 -14.76320 -14.24851 -14.15574 -13.95215 -13.49209 -13.30097 -13.15010 -12.86488 -12.74315 -12.52535 -12.42802 -12.30207 -12.12328 -12.03582 -11.88562 -11.54122 -11.46193 -11.28043 -11.20382 -11.00169 -10.93719 -10.72430 -9.67864 -9.01965 -7.94993 -5.24497 1.43575 1.43964 1.46122 1.54476 1.92304 2.54171 2.92332 3.36679 3.37875 3.48026 3.69146 3.74118 3.84617 3.99216 4.11614 4.17477 4.23695 4.28195 4.29452 4.40522 4.50492 4.63486 4.67750 4.74121 4.79925 4.81443 4.87901 4.92129 4.96345 5.02131 5.07659 5.18527 5.23051 5.27093 5.30638 5.36159 5.43422 5.51873 5.58862 5.73477 6.26791 6.53276 7.11642 7.31642 8.08919 8.30045 9.28909 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020522 B = 0.004967 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.092776 B = 5635.949410 C = 6604.403655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.976 5.976 2 C -0.081 4.081 3 Si 0.973 3.027 4 H -0.289 1.289 5 H -0.299 1.299 6 H -0.264 1.264 7 C -0.235 4.235 8 H 0.079 0.921 9 N -0.748 5.748 10 C 0.187 3.813 11 H 0.044 0.956 12 C -0.122 4.122 13 C -0.109 4.109 14 C -0.106 4.106 15 C -0.078 4.078 16 H 0.133 0.867 17 C 0.101 3.899 18 N -0.609 5.609 19 C 0.537 3.463 20 O -0.602 6.602 21 C -0.191 4.191 22 C -0.135 4.135 23 C -0.155 4.155 24 C 0.129 3.871 25 C -0.081 4.081 26 H 0.070 0.930 27 H 0.248 0.752 28 H 0.370 0.630 29 H 0.042 0.958 30 H 0.025 0.975 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.101 0.899 34 H 0.037 0.963 35 H 0.090 0.910 36 H 0.110 0.890 37 H 0.159 0.841 38 H 0.078 0.922 39 H 0.144 0.856 40 H 0.136 0.864 41 H 0.075 0.925 42 H 0.033 0.967 43 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.066 -24.818 0.199 25.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.627 5.627 2 C -0.273 4.273 3 Si 0.802 3.198 4 H -0.217 1.217 5 H -0.225 1.225 6 H -0.189 1.189 7 C -0.367 4.367 8 H 0.097 0.903 9 N -0.389 5.389 10 C 0.079 3.921 11 H 0.062 0.938 12 C -0.162 4.162 13 C -0.147 4.147 14 C -0.143 4.143 15 C -0.097 4.097 16 H 0.151 0.849 17 C -0.020 4.020 18 N -0.341 5.341 19 C 0.328 3.672 20 O -0.484 6.484 21 C -0.211 4.211 22 C -0.173 4.173 23 C -0.192 4.192 24 C 0.005 3.995 25 C -0.101 4.101 26 H 0.088 0.912 27 H 0.057 0.943 28 H 0.203 0.797 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.119 0.881 34 H 0.056 0.944 35 H 0.108 0.892 36 H 0.128 0.872 37 H 0.176 0.824 38 H 0.096 0.904 39 H 0.162 0.838 40 H 0.154 0.846 41 H 0.094 0.906 42 H 0.052 0.948 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 2.750 -24.252 0.081 24.407 hybrid contribution -0.466 2.319 -0.101 2.367 sum 2.285 -21.932 -0.020 22.051 Atomic orbital electron populations 1.69865 1.06914 1.25880 1.60076 1.25601 0.96238 1.01293 1.04165 0.85138 0.77813 0.79511 0.77324 1.21659 1.22542 1.18883 1.19667 0.91490 0.85252 1.40262 0.90274 1.43046 1.05529 1.01298 1.89060 1.19166 0.93584 0.84464 0.94874 0.93774 1.21521 0.99133 0.97777 0.97771 1.21409 0.98511 0.92700 1.02046 1.21542 0.97692 1.00619 0.94496 1.22088 0.97427 0.91410 0.98789 0.84891 1.22710 0.84837 0.92089 1.02404 1.48480 1.09959 1.08230 1.67436 1.20369 0.80078 0.91408 0.75342 1.90700 1.53859 1.52118 1.51701 1.22214 1.02655 0.91765 1.04483 1.23045 1.00963 1.02801 0.90451 1.23038 0.89708 1.03600 1.02854 1.21428 0.94708 0.84103 0.99268 1.20970 0.91747 0.96607 1.00798 0.91159 0.94281 0.79694 0.93879 0.95643 0.90090 0.91368 0.88076 0.94427 0.89166 0.87222 0.82364 0.90362 0.83830 0.84642 0.90635 0.94824 0.94950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.57 13.06 21.65 0.28 -63.29 16 2 C -0.08 -4.87 5.50 84.86 0.47 -4.41 16 3 Si 0.97 47.87 29.55 68.60 2.03 49.90 16 4 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 5 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 6 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.23 -13.40 9.76 84.03 0.82 -12.58 16 8 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 9 N -0.75 -39.17 4.88 -332.04 -1.62 -40.79 16 10 C 0.19 7.27 2.47 43.09 0.11 7.38 16 11 H 0.04 1.71 8.06 -2.39 -0.02 1.69 16 12 C -0.12 -4.35 5.21 29.64 0.15 -4.20 16 13 C -0.11 -2.55 5.94 30.43 0.18 -2.37 16 14 C -0.11 -2.11 4.89 30.51 0.15 -1.96 16 15 C -0.08 -1.55 3.40 -10.16 -0.03 -1.59 16 16 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 17 C 0.10 1.82 5.71 86.98 0.50 2.32 16 18 N -0.61 -18.38 3.31 -813.98 -2.69 -21.07 16 19 C 0.54 17.63 7.63 87.66 0.67 18.30 16 20 O -0.60 -26.99 16.57 -3.02 -0.05 -27.04 16 21 C -0.19 -3.82 5.31 -11.54 -0.06 -3.88 16 22 C -0.14 -2.18 10.23 30.59 0.31 -1.87 16 23 C -0.15 -2.90 10.04 30.59 0.31 -2.59 16 24 C 0.13 5.00 4.83 86.38 0.42 5.42 16 25 C -0.08 -2.60 2.38 -11.77 -0.03 -2.63 16 26 H 0.07 2.24 8.13 -2.38 -0.02 2.22 16 27 H 0.25 15.76 8.31 -92.71 -0.77 14.99 16 28 H 0.37 21.44 5.70 -92.71 -0.53 20.91 16 29 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.04 0.96 7.93 -2.38 -0.02 0.94 16 35 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.11 1.32 7.54 -2.39 -0.02 1.30 16 37 H 0.16 1.98 7.79 -2.39 -0.02 1.96 16 38 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 39 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.07 1.93 7.67 -2.39 -0.02 1.91 16 42 H 0.03 1.57 7.41 -2.39 -0.02 1.55 16 43 H 0.03 1.48 8.02 -2.39 -0.02 1.46 16 Total: -1.00 -80.75 337.78 2.36 -78.39 By element: Atomic # 1 Polarization: 28.11 SS G_CDS: 0.46 Total: 28.57 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: 3.96 Total: -4.66 kcal Atomic # 7 Polarization: -121.13 SS G_CDS: -4.03 Total: -125.16 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -0.05 Total: -27.04 kcal Atomic # 14 Polarization: 47.87 SS G_CDS: 2.03 Total: 49.90 kcal Total: -80.75 2.36 -78.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992563584.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.557 kcal (2) G-P(sol) polarization free energy of solvation -80.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds