Wall clock time and date at job start Tue Mar 31 2020 00:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99645 * 2 1 4 4 H 1.48492 * 109.47240 * 269.99970 * 3 2 1 5 5 H 1.48493 * 109.47095 * 30.00512 * 3 2 1 6 6 H 1.48508 * 109.46893 * 150.00197 * 3 2 1 7 7 C 1.38811 * 120.00276 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99676 * 359.97438 * 7 2 1 9 9 N 1.36933 * 120.00375 * 179.97438 * 7 2 1 10 10 C 1.46497 * 120.00102 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.92485 * 33.84561 * 10 9 7 12 12 C 1.53843 * 109.94140 * 272.59588 * 10 9 7 13 13 C 1.52520 * 111.65789 * 183.42014 * 12 10 9 14 14 C 1.53986 * 112.50618 * 53.50384 * 13 12 10 15 15 C 1.51615 * 106.94038 * 303.95783 * 14 13 12 16 16 H 1.09002 * 110.50454 * 302.85502 * 15 14 13 17 17 C 1.53061 * 116.67634 * 175.45174 * 15 14 13 18 18 N 1.48666 * 103.44150 * 203.04237 * 17 15 14 19 19 C 1.34776 * 125.78058 * 204.33601 * 18 17 15 20 20 O 1.21281 * 119.99608 * 180.02562 * 19 18 17 21 21 C 1.50699 * 120.00426 * 0.02966 * 19 18 17 22 22 C 1.53000 * 117.50321 * 179.97438 * 21 19 18 23 23 C 1.52997 * 117.50247 * 111.36997 * 21 19 18 24 24 C 1.48242 * 108.43450 * 24.60429 * 18 17 15 25 25 C 1.51440 * 109.93598 * 155.00009 * 10 9 7 26 26 H 1.08997 * 110.21190 * 65.01527 * 25 10 9 27 27 H 0.97003 * 120.00186 * 359.97438 * 1 2 3 28 28 H 0.96999 * 119.99319 * 359.97438 * 9 7 2 29 29 H 1.09004 * 109.04120 * 303.98025 * 12 10 9 30 30 H 1.09001 * 109.04064 * 62.92758 * 12 10 9 31 31 H 1.08996 * 109.03732 * 174.62310 * 13 12 10 32 32 H 1.09003 * 109.03285 * 293.47480 * 13 12 10 33 33 H 1.09004 * 110.64909 * 184.22953 * 14 13 12 34 34 H 1.08999 * 109.32109 * 62.94295 * 14 13 12 35 35 H 1.08993 * 110.62814 * 84.55293 * 17 15 14 36 36 H 1.08998 * 110.76279 * 321.58899 * 17 15 14 37 37 H 1.09002 * 115.55636 * 325.68296 * 21 19 18 38 38 H 1.08990 * 117.49990 * 145.01584 * 22 21 19 39 39 H 1.09004 * 117.49237 * 359.97438 * 22 21 19 40 40 H 1.08999 * 117.49685 * 0.02562 * 23 21 19 41 41 H 1.08999 * 117.52022 * 214.97066 * 23 21 19 42 42 H 1.08997 * 110.17509 * 122.05611 * 24 18 17 43 43 H 1.09001 * 110.16817 * 243.86062 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3797 -1.2021 -0.0011 10 6 4.1122 -2.4708 -0.0011 11 1 3.5606 -3.2182 -0.5714 12 6 4.3183 -2.9577 1.4437 13 6 5.1508 -4.2347 1.4940 14 6 6.4885 -4.0962 0.7440 15 6 6.1581 -3.6755 -0.6747 16 1 5.4894 -4.3987 -1.1415 17 6 7.3428 -3.3677 -1.5937 18 7 6.7547 -2.4778 -2.6293 19 6 7.2284 -2.3025 -3.8789 20 8 6.6635 -1.5468 -4.6409 21 6 8.4598 -3.0455 -4.3291 22 6 8.9472 -2.8041 -5.7592 23 6 8.2807 -4.1310 -5.3923 24 6 5.5629 -1.8112 -2.0526 25 6 5.4875 -2.2730 -0.6033 26 1 6.0817 -1.6093 0.0247 27 1 -0.4850 0.8401 0.0004 28 1 3.8646 -0.3620 -0.0014 29 1 4.8269 -2.1790 2.0122 30 1 3.3456 -3.1503 1.8962 31 1 5.3510 -4.4878 2.5350 32 1 4.5855 -5.0458 1.0348 33 1 7.0243 -5.0454 0.7351 34 1 7.0952 -3.3303 1.2271 35 1 7.7258 -4.2824 -2.0459 36 1 8.1319 -2.8513 -1.0471 37 1 9.2151 -3.2128 -3.5613 38 1 10.0232 -2.8122 -5.9322 39 1 8.3769 -2.1081 -6.3745 40 1 7.2722 -4.3075 -5.7664 41 1 8.9181 -5.0126 -5.3244 42 1 5.6789 -0.7283 -2.0983 43 1 4.6648 -2.1166 -2.5895 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992563594.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:40 Heat of formation + Delta-G solvation = -1.019753 kcal Electronic energy + Delta-G solvation = -22412.517701 eV Core-core repulsion = 19265.262323 eV Total energy + Delta-G solvation = -3147.255378 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.53317 -39.05145 -36.27785 -35.54324 -34.09930 -31.65583 -30.64365 -29.44286 -27.07604 -25.57647 -23.54962 -22.72233 -22.58136 -20.89978 -20.38649 -19.86966 -18.99185 -17.72007 -17.25897 -16.03163 -15.45037 -15.13878 -14.92055 -14.41797 -14.31454 -13.95781 -13.72926 -13.44067 -12.79946 -12.77138 -12.55392 -12.46739 -12.27228 -11.98233 -11.75864 -11.53002 -11.30836 -10.99547 -10.89080 -10.83773 -10.73629 -10.57385 -10.33579 -10.33276 -9.98457 -9.83773 -9.73982 -9.54452 -8.91083 -8.58936 -7.27674 -5.76533 -3.12403 2.49705 2.90095 3.38883 3.42504 3.47564 3.69700 4.25344 4.43197 4.57769 4.60235 4.68656 4.70138 4.80626 4.94977 5.17107 5.24456 5.30547 5.35783 5.39572 5.47863 5.49719 5.55640 5.60278 5.71872 5.72781 5.78549 5.79396 5.90233 5.92782 5.98853 6.05909 6.13308 6.31262 6.34270 6.38852 6.44329 6.53448 6.78461 6.96940 7.55810 7.98783 8.21627 8.42432 9.20414 9.93151 10.12193 11.41781 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016895 B = 0.005294 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.885683 B = 5287.363051 C = 6508.010909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.007 3.993 3 Si 0.881 3.119 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.244 4.244 8 H 0.090 0.910 9 N -0.747 5.747 10 C 0.201 3.799 11 H 0.061 0.939 12 C -0.137 4.137 13 C -0.115 4.115 14 C -0.101 4.101 15 C -0.105 4.105 16 H 0.087 0.913 17 C 0.110 3.890 18 N -0.619 5.619 19 C 0.553 3.447 20 O -0.541 6.541 21 C -0.189 4.189 22 C -0.150 4.150 23 C -0.153 4.153 24 C 0.123 3.877 25 C -0.108 4.108 26 H 0.077 0.923 27 H 0.259 0.741 28 H 0.361 0.639 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.121 0.879 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.069 0.931 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.488 -11.129 -2.939 23.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.189 4.189 3 Si 0.711 3.289 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.373 4.373 8 H 0.108 0.892 9 N -0.388 5.388 10 C 0.091 3.909 11 H 0.079 0.921 12 C -0.178 4.178 13 C -0.153 4.153 14 C -0.139 4.139 15 C -0.124 4.124 16 H 0.105 0.895 17 C -0.012 4.012 18 N -0.353 5.353 19 C 0.342 3.658 20 O -0.419 6.419 21 C -0.210 4.210 22 C -0.187 4.187 23 C -0.190 4.190 24 C 0.001 3.999 25 C -0.128 4.128 26 H 0.095 0.905 27 H 0.069 0.931 28 H 0.194 0.806 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.139 0.861 38 H 0.120 0.880 39 H 0.126 0.874 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.087 0.913 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 19.927 -10.745 -3.439 22.899 hybrid contribution 0.561 1.289 0.275 1.433 sum 20.488 -9.456 -3.165 22.786 Atomic orbital electron populations 1.69698 1.05115 1.25822 1.57477 1.24649 0.95175 0.97130 1.01927 0.86603 0.79185 0.85162 0.77916 1.20960 1.21768 1.20375 1.19056 0.80520 0.94668 1.43103 0.89178 1.42773 1.04058 1.01896 1.90097 1.19912 0.88528 0.89434 0.93008 0.92139 1.22266 0.99692 0.95789 1.00008 1.21552 0.95328 0.98948 0.99480 1.21337 0.97902 1.00986 0.93639 1.22076 0.96700 0.97888 0.95746 0.89517 1.22101 0.96170 0.93680 0.89268 1.49124 1.29463 1.44897 1.11766 1.19297 0.84471 0.81797 0.80259 1.90717 1.60118 1.38121 1.52922 1.22162 0.98975 1.05266 0.94617 1.22945 1.01041 0.99558 0.95143 1.22919 1.03063 0.92717 1.00330 1.21621 0.87516 0.97270 0.93460 1.22196 0.99560 0.96051 0.94944 0.90499 0.93062 0.80629 0.92835 0.91442 0.92532 0.92483 0.91763 0.91807 0.90547 0.91282 0.86099 0.88014 0.87413 0.88221 0.87860 0.91291 0.90504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.36 13.97 55.49 0.78 -28.59 16 2 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 3 Si 0.88 22.33 27.73 -169.99 -4.71 17.62 16 4 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 5 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 6 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 7 C -0.24 -6.75 10.44 -15.06 -0.16 -6.90 16 8 H 0.09 2.67 8.06 -52.48 -0.42 2.25 16 9 N -0.75 -17.10 4.86 -53.77 -0.26 -17.36 16 10 C 0.20 3.62 2.53 -68.28 -0.17 3.44 16 11 H 0.06 1.16 7.99 -51.93 -0.41 0.74 16 12 C -0.14 -2.18 5.49 -26.54 -0.15 -2.32 16 13 C -0.11 -1.36 5.81 -26.46 -0.15 -1.52 16 14 C -0.10 -0.99 5.78 -26.92 -0.16 -1.15 16 15 C -0.10 -1.18 2.44 -89.90 -0.22 -1.40 16 16 H 0.09 1.03 8.04 -51.93 -0.42 0.62 16 17 C 0.11 1.13 6.12 -2.81 -0.02 1.11 16 18 N -0.62 -8.66 3.38 -170.88 -0.58 -9.24 16 19 C 0.55 8.28 7.65 -10.99 -0.08 8.20 16 20 O -0.54 -10.44 16.60 5.56 0.09 -10.34 16 21 C -0.19 -1.97 5.30 -91.77 -0.49 -2.46 16 22 C -0.15 -1.41 10.04 -26.75 -0.27 -1.68 16 23 C -0.15 -1.34 10.23 -26.75 -0.27 -1.61 16 24 C 0.12 2.02 6.52 -3.44 -0.02 1.99 16 25 C -0.11 -1.59 1.82 -90.37 -0.16 -1.75 16 26 H 0.08 1.12 8.00 -51.93 -0.42 0.71 16 27 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 28 H 0.36 8.27 5.67 -40.82 -0.23 8.04 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.62 8.05 -51.93 -0.42 0.20 16 35 H 0.08 0.63 7.73 -51.93 -0.40 0.23 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.12 0.98 7.80 -51.93 -0.40 0.58 16 38 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.11 1.22 7.67 -51.93 -0.40 0.82 16 40 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.08 1.43 8.08 -51.93 -0.42 1.01 16 LS Contribution 339.73 15.07 5.12 5.12 Total: -1.00 -33.07 339.73 -9.32 -42.40 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -7.34 Total: 6.33 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -2.42 Total: -5.93 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: -0.06 Total: -55.18 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.09 Total: -10.34 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.71 Total: 17.62 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.07 -9.32 -42.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992563594.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.377 kcal (2) G-P(sol) polarization free energy of solvation -33.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds