Wall clock time and date at job start Tue Mar 31 2020 00:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99645 * 2 1 4 4 H 1.48492 * 109.47240 * 269.99970 * 3 2 1 5 5 H 1.48493 * 109.47095 * 30.00512 * 3 2 1 6 6 H 1.48508 * 109.46893 * 150.00197 * 3 2 1 7 7 C 1.38811 * 120.00276 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99676 * 359.97438 * 7 2 1 9 9 N 1.36933 * 120.00375 * 179.97438 * 7 2 1 10 10 C 1.46497 * 120.00102 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.92485 * 33.84561 * 10 9 7 12 12 C 1.53843 * 109.94140 * 272.59588 * 10 9 7 13 13 C 1.52520 * 111.65789 * 183.42014 * 12 10 9 14 14 C 1.53986 * 112.50618 * 53.50384 * 13 12 10 15 15 C 1.51615 * 106.94038 * 303.95783 * 14 13 12 16 16 H 1.09002 * 110.50454 * 302.85502 * 15 14 13 17 17 C 1.53061 * 116.67634 * 175.45174 * 15 14 13 18 18 N 1.48666 * 103.44150 * 203.04237 * 17 15 14 19 19 C 1.34776 * 125.78058 * 204.33601 * 18 17 15 20 20 O 1.21281 * 119.99608 * 180.02562 * 19 18 17 21 21 C 1.50699 * 120.00426 * 0.02966 * 19 18 17 22 22 C 1.53000 * 117.50321 * 179.97438 * 21 19 18 23 23 C 1.52997 * 117.50247 * 111.36997 * 21 19 18 24 24 C 1.48242 * 108.43450 * 24.60429 * 18 17 15 25 25 C 1.51440 * 109.93598 * 155.00009 * 10 9 7 26 26 H 1.08997 * 110.21190 * 65.01527 * 25 10 9 27 27 H 0.97003 * 120.00186 * 359.97438 * 1 2 3 28 28 H 0.96999 * 119.99319 * 359.97438 * 9 7 2 29 29 H 1.09004 * 109.04120 * 303.98025 * 12 10 9 30 30 H 1.09001 * 109.04064 * 62.92758 * 12 10 9 31 31 H 1.08996 * 109.03732 * 174.62310 * 13 12 10 32 32 H 1.09003 * 109.03285 * 293.47480 * 13 12 10 33 33 H 1.09004 * 110.64909 * 184.22953 * 14 13 12 34 34 H 1.08999 * 109.32109 * 62.94295 * 14 13 12 35 35 H 1.08993 * 110.62814 * 84.55293 * 17 15 14 36 36 H 1.08998 * 110.76279 * 321.58899 * 17 15 14 37 37 H 1.09002 * 115.55636 * 325.68296 * 21 19 18 38 38 H 1.08990 * 117.49990 * 145.01584 * 22 21 19 39 39 H 1.09004 * 117.49237 * 359.97438 * 22 21 19 40 40 H 1.08999 * 117.49685 * 0.02562 * 23 21 19 41 41 H 1.08999 * 117.52022 * 214.97066 * 23 21 19 42 42 H 1.08997 * 110.17509 * 122.05611 * 24 18 17 43 43 H 1.09001 * 110.16817 * 243.86062 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3797 -1.2021 -0.0011 10 6 4.1122 -2.4708 -0.0011 11 1 3.5606 -3.2182 -0.5714 12 6 4.3183 -2.9577 1.4437 13 6 5.1508 -4.2347 1.4940 14 6 6.4885 -4.0962 0.7440 15 6 6.1581 -3.6755 -0.6747 16 1 5.4894 -4.3987 -1.1415 17 6 7.3428 -3.3677 -1.5937 18 7 6.7547 -2.4778 -2.6293 19 6 7.2284 -2.3025 -3.8789 20 8 6.6635 -1.5468 -4.6409 21 6 8.4598 -3.0455 -4.3291 22 6 8.9472 -2.8041 -5.7592 23 6 8.2807 -4.1310 -5.3923 24 6 5.5629 -1.8112 -2.0526 25 6 5.4875 -2.2730 -0.6033 26 1 6.0817 -1.6093 0.0247 27 1 -0.4850 0.8401 0.0004 28 1 3.8646 -0.3620 -0.0014 29 1 4.8269 -2.1790 2.0122 30 1 3.3456 -3.1503 1.8962 31 1 5.3510 -4.4878 2.5350 32 1 4.5855 -5.0458 1.0348 33 1 7.0243 -5.0454 0.7351 34 1 7.0952 -3.3303 1.2271 35 1 7.7258 -4.2824 -2.0459 36 1 8.1319 -2.8513 -1.0471 37 1 9.2151 -3.2128 -3.5613 38 1 10.0232 -2.8122 -5.9322 39 1 8.3769 -2.1081 -6.3745 40 1 7.2722 -4.3075 -5.7664 41 1 8.9181 -5.0126 -5.3244 42 1 5.6789 -0.7283 -2.0983 43 1 4.6648 -2.1166 -2.5895 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992563594.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:40 Heat of formation + Delta-G solvation = -22.821971 kcal Electronic energy + Delta-G solvation = -22413.463116 eV Core-core repulsion = 19265.262323 eV Total energy + Delta-G solvation = -3148.200793 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.65458 -40.17631 -37.27754 -36.84785 -35.64388 -33.55830 -31.80925 -30.96900 -28.31878 -26.67858 -25.19706 -23.92586 -23.30037 -22.07706 -21.63374 -21.13576 -20.01798 -19.63015 -18.33844 -17.20938 -16.74903 -16.49899 -16.11753 -15.93006 -15.39256 -15.19158 -15.03027 -14.67945 -14.53762 -14.00862 -13.80524 -13.64531 -13.53069 -13.27872 -12.96418 -12.84571 -12.61513 -12.42999 -12.32384 -11.98347 -11.86953 -11.72928 -11.56545 -11.50634 -11.44644 -11.26278 -10.98721 -10.92096 -10.91132 -9.75085 -9.32114 -8.04974 -5.37112 1.32225 1.36835 1.42312 1.43172 1.84042 2.44781 2.92032 3.21335 3.26615 3.49482 3.56502 3.73694 3.84425 3.93063 3.98914 4.17796 4.21272 4.24182 4.41983 4.43228 4.50390 4.58632 4.62862 4.63598 4.73820 4.74333 4.82190 4.88139 4.91293 5.01193 5.08732 5.17579 5.23243 5.25833 5.31727 5.37166 5.42313 5.50301 5.65464 5.75982 6.19831 6.48934 7.05887 7.08826 7.82773 8.00435 9.16945 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016895 B = 0.005294 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.885683 B = 5287.363051 C = 6508.010909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.062 4.062 3 Si 0.947 3.053 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.250 1.250 7 C -0.224 4.224 8 H 0.057 0.943 9 N -0.752 5.752 10 C 0.193 3.807 11 H 0.039 0.961 12 C -0.128 4.128 13 C -0.111 4.111 14 C -0.090 4.090 15 C -0.092 4.092 16 H 0.078 0.922 17 C 0.112 3.888 18 N -0.618 5.618 19 C 0.540 3.460 20 O -0.601 6.601 21 C -0.191 4.191 22 C -0.154 4.154 23 C -0.138 4.138 24 C 0.123 3.877 25 C -0.103 4.103 26 H 0.089 0.911 27 H 0.257 0.743 28 H 0.363 0.637 29 H 0.055 0.945 30 H 0.035 0.965 31 H 0.076 0.924 32 H 0.056 0.944 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.111 0.889 36 H 0.095 0.905 37 H 0.158 0.842 38 H 0.134 0.866 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.141 0.859 42 H 0.047 0.953 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.352 -12.961 -1.950 28.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.253 4.253 3 Si 0.775 3.225 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.174 1.174 7 C -0.355 4.355 8 H 0.075 0.925 9 N -0.394 5.394 10 C 0.085 3.915 11 H 0.057 0.943 12 C -0.168 4.168 13 C -0.149 4.149 14 C -0.128 4.128 15 C -0.112 4.112 16 H 0.097 0.903 17 C -0.008 4.008 18 N -0.350 5.350 19 C 0.331 3.669 20 O -0.483 6.483 21 C -0.212 4.212 22 C -0.191 4.191 23 C -0.175 4.175 24 C 0.001 3.999 25 C -0.123 4.123 26 H 0.107 0.893 27 H 0.066 0.934 28 H 0.196 0.804 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.119 0.881 34 H 0.095 0.905 35 H 0.129 0.871 36 H 0.113 0.887 37 H 0.175 0.825 38 H 0.152 0.848 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.159 0.841 42 H 0.065 0.935 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 24.869 -12.644 -2.412 28.003 hybrid contribution -1.024 1.756 -0.084 2.035 sum 23.845 -10.888 -2.496 26.331 Atomic orbital electron populations 1.69872 1.07038 1.26502 1.60138 1.25415 0.95999 1.00899 1.03022 0.85518 0.78926 0.80324 0.77702 1.21427 1.22027 1.17418 1.19020 0.82703 0.93260 1.40504 0.92507 1.42819 1.02435 1.03988 1.90169 1.20154 0.89681 0.86872 0.94759 0.94255 1.22088 0.99164 0.98239 0.97332 1.21512 0.95996 0.96081 1.01318 1.21331 0.96692 1.03289 0.91449 1.22095 0.96706 0.94895 0.97472 0.90345 1.22400 0.95766 0.94581 0.88091 1.49241 1.28490 1.44884 1.12424 1.20293 0.85433 0.81321 0.79816 1.90685 1.62209 1.40828 1.54566 1.22221 0.97361 1.05682 0.95905 1.23026 1.02532 0.99508 0.94038 1.23039 1.02660 0.93495 0.98353 1.21386 0.87694 0.96333 0.94535 1.22028 0.97640 0.99202 0.93400 0.89278 0.93440 0.80405 0.92642 0.94588 0.90536 0.92523 0.88125 0.90508 0.87122 0.88660 0.82461 0.84803 0.90450 0.90269 0.84082 0.93499 0.94191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.74 13.97 21.65 0.30 -64.44 16 2 C -0.06 -3.75 5.50 84.86 0.47 -3.29 16 3 Si 0.95 47.37 27.73 68.60 1.90 49.27 16 4 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 5 H -0.29 -14.73 7.11 99.48 0.71 -14.03 16 6 H -0.25 -11.18 6.52 99.48 0.65 -10.54 16 7 C -0.22 -12.96 10.44 84.03 0.88 -12.08 16 8 H 0.06 3.60 8.06 -2.91 -0.02 3.58 16 9 N -0.75 -35.30 4.86 -324.02 -1.57 -36.87 16 10 C 0.19 7.05 2.53 44.77 0.11 7.16 16 11 H 0.04 1.58 7.99 -2.39 -0.02 1.56 16 12 C -0.13 -3.97 5.49 30.72 0.17 -3.80 16 13 C -0.11 -2.28 5.81 30.77 0.18 -2.10 16 14 C -0.09 -1.30 5.78 30.47 0.18 -1.13 16 15 C -0.09 -1.76 2.44 -10.32 -0.03 -1.79 16 16 H 0.08 1.67 8.04 -2.39 -0.02 1.65 16 17 C 0.11 1.77 6.12 85.98 0.53 2.30 16 18 N -0.62 -16.42 3.38 -812.93 -2.75 -19.16 16 19 C 0.54 15.80 7.65 87.66 0.67 16.47 16 20 O -0.60 -24.19 16.60 -3.03 -0.05 -24.24 16 21 C -0.19 -3.37 5.30 -11.54 -0.06 -3.43 16 22 C -0.15 -2.54 10.04 30.58 0.31 -2.23 16 23 C -0.14 -1.97 10.23 30.58 0.31 -1.66 16 24 C 0.12 4.14 6.52 85.81 0.56 4.70 16 25 C -0.10 -2.92 1.82 -10.63 -0.02 -2.94 16 26 H 0.09 2.37 8.00 -2.39 -0.02 2.35 16 27 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 28 H 0.36 16.65 5.67 -92.71 -0.53 16.12 16 29 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.04 1.31 8.14 -2.39 -0.02 1.30 16 31 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 33 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.08 1.01 8.05 -2.39 -0.02 0.99 16 35 H 0.11 1.10 7.73 -2.39 -0.02 1.09 16 36 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.16 1.64 7.80 -2.39 -0.02 1.62 16 38 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.08 1.77 7.67 -2.38 -0.02 1.75 16 40 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.04 1.60 8.08 -2.39 -0.02 1.58 16 Total: -1.00 -79.54 339.73 2.48 -77.06 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 0.40 Total: 22.21 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: 4.25 Total: -3.82 kcal Atomic # 7 Polarization: -116.45 SS G_CDS: -4.02 Total: -120.47 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.05 Total: -24.24 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 1.90 Total: 49.27 kcal Total: -79.54 2.48 -77.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992563594.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.240 kcal (2) G-P(sol) polarization free energy of solvation -79.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds