Wall clock time and date at job start Tue Mar 31 2020 00:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 119.99903 * 2 1 4 4 H 1.48503 * 109.47216 * 269.99837 * 3 2 1 5 5 H 1.48496 * 109.47403 * 29.99998 * 3 2 1 6 6 H 1.48502 * 109.47228 * 149.99934 * 3 2 1 7 7 C 1.38812 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00225 * 359.97438 * 7 2 1 9 9 N 1.36940 * 119.99877 * 180.02562 * 7 2 1 10 10 C 1.46508 * 119.99695 * 179.97438 * 9 7 2 11 11 H 1.08995 * 109.99236 * 328.10414 * 10 9 7 12 12 C 1.53837 * 109.93860 * 206.89800 * 10 9 7 13 13 C 1.52710 * 111.71488 * 297.81625 * 12 10 9 14 14 C 1.53809 * 111.59975 * 306.01521 * 13 12 10 15 15 C 1.51621 * 107.09362 * 57.48973 * 14 13 12 16 16 H 1.08999 * 110.50516 * 55.14562 * 15 14 13 17 17 C 1.53053 * 116.68460 * 182.55042 * 15 14 13 18 18 N 1.48655 * 103.44988 * 155.89109 * 17 15 14 19 19 C 1.34779 * 125.78798 * 155.60453 * 18 17 15 20 20 O 1.21286 * 120.00022 * 180.02562 * 19 18 17 21 21 C 1.50701 * 119.99892 * 0.02562 * 19 18 17 22 22 C 1.53001 * 117.49769 * 248.74788 * 21 19 18 23 23 C 1.52993 * 117.49821 * 180.09129 * 21 19 18 24 24 C 1.48242 * 108.42844 * 335.62545 * 18 17 15 25 25 C 1.51442 * 109.93902 * 89.30341 * 10 9 7 26 26 H 1.08994 * 110.22635 * 173.76292 * 25 10 9 27 27 H 0.96996 * 120.00436 * 0.02562 * 1 2 3 28 28 H 0.96992 * 120.00367 * 0.02562 * 9 7 2 29 29 H 1.09002 * 109.03931 * 58.38108 * 12 10 9 30 30 H 1.09003 * 109.04514 * 177.25186 * 12 10 9 31 31 H 1.08995 * 109.15417 * 185.42806 * 13 12 10 32 32 H 1.09004 * 109.01180 * 66.50935 * 13 12 10 33 33 H 1.09000 * 109.94868 * 298.06971 * 14 13 12 34 34 H 1.09005 * 109.94579 * 176.90844 * 14 13 12 35 35 H 1.09000 * 110.63143 * 274.38455 * 17 15 14 36 36 H 1.09009 * 110.62516 * 37.39820 * 17 15 14 37 37 H 1.08995 * 115.54930 * 34.41700 * 21 19 18 38 38 H 1.09001 * 117.49753 * 359.97438 * 22 21 19 39 39 H 1.08998 * 117.50022 * 145.01417 * 22 21 19 40 40 H 1.08999 * 117.50019 * 214.97643 * 23 21 19 41 41 H 1.09002 * 117.50107 * 359.96984 * 23 21 19 42 42 H 1.08999 * 110.17413 * 115.92104 * 24 18 17 43 43 H 1.09005 * 110.17421 * 237.64186 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0014 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4709 0.0022 11 1 3.5451 -3.2281 0.5437 12 6 5.4911 -2.2800 0.6569 13 6 6.3528 -1.2870 -0.1201 14 6 6.4730 -1.6803 -1.6022 15 6 5.0648 -1.7554 -2.1590 16 1 4.5363 -0.8175 -1.9885 17 6 4.9254 -2.1929 -3.6191 18 7 3.5443 -2.7388 -3.6861 19 6 2.7834 -2.8238 -4.7953 20 8 1.6654 -3.2894 -4.7295 21 6 3.3218 -2.3404 -6.1173 22 6 2.6857 -1.0881 -6.7237 23 6 2.4088 -2.4621 -7.3389 24 6 3.1457 -3.1733 -2.3260 25 6 4.3559 -2.9278 -1.4209 26 1 4.9942 -3.8113 -1.4290 27 1 -0.4850 0.8400 -0.0004 28 1 3.8646 -0.3621 0.0014 29 1 5.3541 -1.9118 1.6736 30 1 6.0033 -3.2414 0.6942 31 1 7.3488 -1.2560 0.3214 32 1 5.9034 -0.2964 -0.0505 33 1 6.9601 -2.6514 -1.6909 34 1 7.0464 -0.9263 -2.1416 35 1 5.0336 -1.3390 -4.2879 36 1 5.6558 -2.9654 -3.8598 37 1 4.3908 -2.4869 -6.2713 38 1 1.8774 -0.6141 -6.1667 39 1 3.3361 -0.4107 -7.2770 40 1 2.8772 -2.6881 -8.2968 41 1 1.4189 -2.8922 -7.1865 42 1 2.3071 -2.5744 -1.9708 43 1 2.8764 -4.2296 -2.3327 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992563596.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:43 Heat of formation + Delta-G solvation = 4.058236 kcal Electronic energy + Delta-G solvation = -23103.446856 eV Core-core repulsion = 19956.411676 eV Total energy + Delta-G solvation = -3147.035180 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.28875 -38.89082 -36.06288 -35.31529 -33.73911 -31.49662 -30.44296 -29.45117 -27.08613 -25.34305 -23.48011 -22.49893 -22.34648 -21.05201 -20.74606 -18.86173 -18.67479 -17.62519 -17.09550 -15.80518 -15.18248 -14.90545 -14.80235 -14.46900 -14.30080 -13.76876 -13.66575 -13.08702 -12.75702 -12.68474 -12.42504 -12.25851 -11.87415 -11.84982 -11.57200 -11.48195 -11.26154 -10.98038 -10.81323 -10.59274 -10.54126 -10.42877 -10.36626 -10.12538 -10.04526 -9.52617 -9.48194 -9.41476 -8.92691 -8.18908 -7.28913 -5.76348 -3.11891 2.81388 3.23469 3.34178 3.35992 3.43285 3.96365 4.53323 4.57485 4.71341 4.83093 4.92837 4.93857 5.00247 5.16049 5.29866 5.35978 5.46470 5.53024 5.56247 5.59749 5.65236 5.69591 5.73630 5.83287 5.87482 5.91936 5.98488 5.99581 6.14101 6.15673 6.21195 6.32241 6.45190 6.47045 6.55477 6.69845 6.74878 6.79047 7.02270 7.91333 7.99389 8.42195 8.55428 9.20271 9.92509 10.11925 11.41709 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013729 B = 0.007410 C = 0.005806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.924037 B = 3777.824132 C = 4821.787667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.878 3.122 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.092 0.908 9 N -0.740 5.740 10 C 0.195 3.805 11 H 0.063 0.937 12 C -0.124 4.124 13 C -0.116 4.116 14 C -0.100 4.100 15 C -0.108 4.108 16 H 0.096 0.904 17 C 0.113 3.887 18 N -0.611 5.611 19 C 0.553 3.447 20 O -0.542 6.542 21 C -0.188 4.188 22 C -0.154 4.154 23 C -0.150 4.150 24 C 0.112 3.888 25 C -0.114 4.114 26 H 0.064 0.936 27 H 0.259 0.741 28 H 0.361 0.639 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.118 0.882 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.107 0.893 42 H 0.103 0.897 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.354 -3.839 -8.662 18.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.188 4.188 3 Si 0.708 3.292 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.372 4.372 8 H 0.110 0.890 9 N -0.383 5.383 10 C 0.084 3.916 11 H 0.081 0.919 12 C -0.163 4.163 13 C -0.154 4.154 14 C -0.138 4.138 15 C -0.127 4.127 16 H 0.114 0.886 17 C -0.010 4.010 18 N -0.344 5.344 19 C 0.341 3.659 20 O -0.420 6.420 21 C -0.209 4.209 22 C -0.191 4.191 23 C -0.188 4.188 24 C -0.009 4.009 25 C -0.136 4.136 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.195 0.805 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.136 0.864 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.126 0.874 42 H 0.121 0.879 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 14.436 -4.158 -8.657 17.339 hybrid contribution 0.716 1.308 -0.022 1.491 sum 15.152 -2.851 -8.679 17.693 Atomic orbital electron populations 1.69691 1.05080 1.25729 1.57162 1.24651 0.95120 0.97001 1.02037 0.86657 0.79291 0.85524 0.77692 1.21211 1.21795 1.20340 1.19040 0.80521 0.94611 1.43051 0.89019 1.42788 1.03904 1.01835 1.89807 1.19832 0.90870 0.89504 0.91348 0.91940 1.21867 0.95979 0.98901 0.99526 1.21511 0.99185 0.99900 0.94771 1.21304 0.95527 1.01124 0.95836 1.22068 0.96758 1.01143 0.92703 0.88594 1.22026 0.83391 0.97673 0.97925 1.48976 1.15513 1.61611 1.08305 1.19211 0.84481 0.78591 0.83628 1.90701 1.19278 1.46263 1.85749 1.22157 0.99746 1.05880 0.93124 1.22943 1.03039 0.90475 1.02669 1.22936 1.01234 0.99665 0.94925 1.21941 0.99740 0.99490 0.79705 1.22685 0.95924 0.96714 0.98242 0.91782 0.93081 0.80519 0.91697 0.92231 0.92509 0.92192 0.91947 0.92229 0.91072 0.91887 0.86360 0.88033 0.88025 0.88222 0.87435 0.87903 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.17 13.97 55.49 0.78 -28.40 16 2 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 3 Si 0.88 21.78 27.74 -169.99 -4.71 17.07 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 7 C -0.24 -6.52 8.64 -15.06 -0.13 -6.65 16 8 H 0.09 2.69 7.81 -52.49 -0.41 2.28 16 9 N -0.74 -16.16 3.73 -53.76 -0.20 -16.36 16 10 C 0.19 3.42 3.03 -68.28 -0.21 3.21 16 11 H 0.06 1.16 8.07 -51.93 -0.42 0.74 16 12 C -0.12 -1.74 5.51 -26.44 -0.15 -1.89 16 13 C -0.12 -1.48 5.61 -26.46 -0.15 -1.63 16 14 C -0.10 -1.17 5.70 -27.01 -0.15 -1.32 16 15 C -0.11 -1.58 2.35 -89.90 -0.21 -1.79 16 16 H 0.10 1.73 6.75 -51.93 -0.35 1.38 16 17 C 0.11 1.53 6.16 -2.82 -0.02 1.51 16 18 N -0.61 -10.64 3.38 -170.40 -0.58 -11.22 16 19 C 0.55 10.16 7.65 -10.98 -0.08 10.08 16 20 O -0.54 -12.24 16.60 5.55 0.09 -12.15 16 21 C -0.19 -2.55 5.29 -91.77 -0.49 -3.03 16 22 C -0.15 -1.90 10.24 -26.70 -0.27 -2.18 16 23 C -0.15 -1.82 10.05 -26.70 -0.27 -2.09 16 24 C 0.11 2.14 6.64 -3.03 -0.02 2.12 16 25 C -0.11 -1.81 2.16 -89.96 -0.19 -2.01 16 26 H 0.06 0.90 7.93 -51.93 -0.41 0.48 16 27 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 28 H 0.36 7.85 3.97 -40.82 -0.16 7.69 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.87 7.04 -51.93 -0.37 0.51 16 33 H 0.06 0.65 7.99 -51.93 -0.41 0.23 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.87 7.73 -51.93 -0.40 0.47 16 36 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 37 H 0.12 1.29 7.80 -51.93 -0.41 0.88 16 38 H 0.10 1.47 8.14 -51.93 -0.42 1.04 16 39 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.11 1.50 7.67 -51.93 -0.40 1.10 16 42 H 0.10 2.44 5.84 -51.93 -0.30 2.14 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 330.85 15.07 4.99 4.99 Total: -1.00 -32.67 330.85 -9.09 -41.76 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -7.02 Total: 9.86 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -2.43 Total: -5.54 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: 0.00 Total: -55.98 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.09 Total: -12.15 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.71 Total: 17.07 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.67 -9.09 -41.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992563596.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.818 kcal (2) G-P(sol) polarization free energy of solvation -32.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds