Wall clock time and date at job start Tue Mar 31 2020 00:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 119.99903 * 2 1 4 4 H 1.48503 * 109.47216 * 269.99837 * 3 2 1 5 5 H 1.48496 * 109.47403 * 29.99998 * 3 2 1 6 6 H 1.48502 * 109.47228 * 149.99934 * 3 2 1 7 7 C 1.38812 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00225 * 359.97438 * 7 2 1 9 9 N 1.36940 * 119.99877 * 180.02562 * 7 2 1 10 10 C 1.46508 * 119.99695 * 179.97438 * 9 7 2 11 11 H 1.08995 * 109.99236 * 328.10414 * 10 9 7 12 12 C 1.53837 * 109.93860 * 206.89800 * 10 9 7 13 13 C 1.52710 * 111.71488 * 297.81625 * 12 10 9 14 14 C 1.53809 * 111.59975 * 306.01521 * 13 12 10 15 15 C 1.51621 * 107.09362 * 57.48973 * 14 13 12 16 16 H 1.08999 * 110.50516 * 55.14562 * 15 14 13 17 17 C 1.53053 * 116.68460 * 182.55042 * 15 14 13 18 18 N 1.48655 * 103.44988 * 155.89109 * 17 15 14 19 19 C 1.34779 * 125.78798 * 155.60453 * 18 17 15 20 20 O 1.21286 * 120.00022 * 180.02562 * 19 18 17 21 21 C 1.50701 * 119.99892 * 0.02562 * 19 18 17 22 22 C 1.53001 * 117.49769 * 248.74788 * 21 19 18 23 23 C 1.52993 * 117.49821 * 180.09129 * 21 19 18 24 24 C 1.48242 * 108.42844 * 335.62545 * 18 17 15 25 25 C 1.51442 * 109.93902 * 89.30341 * 10 9 7 26 26 H 1.08994 * 110.22635 * 173.76292 * 25 10 9 27 27 H 0.96996 * 120.00436 * 0.02562 * 1 2 3 28 28 H 0.96992 * 120.00367 * 0.02562 * 9 7 2 29 29 H 1.09002 * 109.03931 * 58.38108 * 12 10 9 30 30 H 1.09003 * 109.04514 * 177.25186 * 12 10 9 31 31 H 1.08995 * 109.15417 * 185.42806 * 13 12 10 32 32 H 1.09004 * 109.01180 * 66.50935 * 13 12 10 33 33 H 1.09000 * 109.94868 * 298.06971 * 14 13 12 34 34 H 1.09005 * 109.94579 * 176.90844 * 14 13 12 35 35 H 1.09000 * 110.63143 * 274.38455 * 17 15 14 36 36 H 1.09009 * 110.62516 * 37.39820 * 17 15 14 37 37 H 1.08995 * 115.54930 * 34.41700 * 21 19 18 38 38 H 1.09001 * 117.49753 * 359.97438 * 22 21 19 39 39 H 1.08998 * 117.50022 * 145.01417 * 22 21 19 40 40 H 1.08999 * 117.50019 * 214.97643 * 23 21 19 41 41 H 1.09002 * 117.50107 * 359.96984 * 23 21 19 42 42 H 1.08999 * 110.17413 * 115.92104 * 24 18 17 43 43 H 1.09005 * 110.17421 * 237.64186 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0014 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4709 0.0022 11 1 3.5451 -3.2281 0.5437 12 6 5.4911 -2.2800 0.6569 13 6 6.3528 -1.2870 -0.1201 14 6 6.4730 -1.6803 -1.6022 15 6 5.0648 -1.7554 -2.1590 16 1 4.5363 -0.8175 -1.9885 17 6 4.9254 -2.1929 -3.6191 18 7 3.5443 -2.7388 -3.6861 19 6 2.7834 -2.8238 -4.7953 20 8 1.6654 -3.2894 -4.7295 21 6 3.3218 -2.3404 -6.1173 22 6 2.6857 -1.0881 -6.7237 23 6 2.4088 -2.4621 -7.3389 24 6 3.1457 -3.1733 -2.3260 25 6 4.3559 -2.9278 -1.4209 26 1 4.9942 -3.8113 -1.4290 27 1 -0.4850 0.8400 -0.0004 28 1 3.8646 -0.3621 0.0014 29 1 5.3541 -1.9118 1.6736 30 1 6.0033 -3.2414 0.6942 31 1 7.3488 -1.2560 0.3214 32 1 5.9034 -0.2964 -0.0505 33 1 6.9601 -2.6514 -1.6909 34 1 7.0464 -0.9263 -2.1416 35 1 5.0336 -1.3390 -4.2879 36 1 5.6558 -2.9654 -3.8598 37 1 4.3908 -2.4869 -6.2713 38 1 1.8774 -0.6141 -6.1667 39 1 3.3361 -0.4107 -7.2770 40 1 2.8772 -2.6881 -8.2968 41 1 1.4189 -2.8922 -7.1865 42 1 2.3071 -2.5744 -1.9708 43 1 2.8764 -4.2296 -2.3327 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992563596.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:42 Heat of formation + Delta-G solvation = -17.775411 kcal Electronic energy + Delta-G solvation = -23104.393634 eV Core-core repulsion = 19956.411676 eV Total energy + Delta-G solvation = -3147.981958 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.61044 -40.21791 -37.24571 -36.76326 -35.41106 -33.32373 -31.71636 -31.07503 -28.42370 -26.58623 -25.24917 -23.86923 -23.34424 -22.29510 -21.94281 -20.26822 -19.98537 -19.60435 -18.34884 -17.18704 -16.66572 -16.39473 -16.09644 -15.86753 -15.75092 -15.13952 -15.00390 -14.53579 -14.40690 -14.06362 -13.77428 -13.52400 -13.46243 -13.10803 -12.92801 -12.75907 -12.58057 -12.47089 -12.35580 -12.10320 -11.87079 -11.66528 -11.57131 -11.49593 -11.34918 -11.20254 -10.93489 -10.91465 -10.62505 -9.63834 -9.28938 -8.01196 -5.32192 1.30289 1.35245 1.42537 1.46208 1.94091 2.46439 2.90069 3.30252 3.36483 3.58006 3.61917 3.80447 3.83547 3.94634 3.97504 4.15179 4.26241 4.32498 4.39147 4.49410 4.62315 4.63343 4.67599 4.68744 4.73452 4.84044 4.88138 4.93309 4.97646 5.09283 5.10765 5.18607 5.20708 5.28158 5.36332 5.42535 5.49971 5.53245 5.67753 5.80639 6.23043 6.56900 7.10512 7.14028 7.87529 8.05981 9.21275 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013729 B = 0.007410 C = 0.005806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.924037 B = 3777.824132 C = 4821.787667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.990 5.990 2 C -0.072 4.072 3 Si 0.949 3.051 4 H -0.284 1.284 5 H -0.300 1.300 6 H -0.244 1.244 7 C -0.209 4.209 8 H 0.049 0.951 9 N -0.739 5.739 10 C 0.182 3.818 11 H 0.041 0.959 12 C -0.116 4.116 13 C -0.117 4.117 14 C -0.090 4.090 15 C -0.101 4.101 16 H 0.057 0.943 17 C 0.112 3.888 18 N -0.615 5.615 19 C 0.535 3.465 20 O -0.605 6.605 21 C -0.190 4.190 22 C -0.149 4.149 23 C -0.144 4.144 24 C 0.112 3.888 25 C -0.107 4.107 26 H 0.100 0.900 27 H 0.253 0.747 28 H 0.366 0.634 29 H 0.056 0.944 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.038 0.962 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.160 0.840 38 H 0.067 0.933 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.077 0.923 42 H 0.040 0.960 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.121 -3.455 -10.153 23.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.641 5.641 2 C -0.262 4.262 3 Si 0.777 3.223 4 H -0.211 1.211 5 H -0.227 1.227 6 H -0.168 1.168 7 C -0.340 4.340 8 H 0.067 0.933 9 N -0.383 5.383 10 C 0.073 3.927 11 H 0.059 0.941 12 C -0.154 4.154 13 C -0.154 4.154 14 C -0.127 4.127 15 C -0.121 4.121 16 H 0.075 0.925 17 C -0.009 4.009 18 N -0.346 5.346 19 C 0.325 3.675 20 O -0.487 6.487 21 C -0.210 4.210 22 C -0.187 4.187 23 C -0.181 4.181 24 C -0.011 4.011 25 C -0.128 4.128 26 H 0.118 0.882 27 H 0.062 0.938 28 H 0.200 0.800 29 H 0.075 0.925 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.056 0.944 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.109 0.891 36 H 0.121 0.879 37 H 0.177 0.823 38 H 0.086 0.914 39 H 0.160 0.840 40 H 0.159 0.841 41 H 0.095 0.905 42 H 0.059 0.941 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 20.318 -3.795 -10.139 23.022 hybrid contribution -1.149 1.021 0.463 1.605 sum 19.169 -2.774 -9.676 21.651 Atomic orbital electron populations 1.69907 1.07361 1.26249 1.60618 1.25481 0.95968 1.01203 1.03553 0.85483 0.78990 0.80039 0.77759 1.21100 1.22726 1.16814 1.18914 0.82922 0.92736 1.39463 0.93278 1.42727 1.01893 1.03947 1.89685 1.20157 0.92689 0.86989 0.92828 0.94083 1.21792 0.93534 1.01277 0.98769 1.21551 1.00125 0.98035 0.95732 1.21306 0.93233 1.03513 0.94665 1.22043 0.98465 0.98239 0.93332 0.92460 1.22352 0.81459 0.99475 0.97574 1.49173 1.17284 1.61033 1.07141 1.20302 0.83881 0.77702 0.85576 1.90663 1.22072 1.49023 1.86935 1.22234 1.01773 1.06619 0.90412 1.23030 1.02562 0.90829 1.02251 1.23036 0.99927 0.99091 0.96081 1.21728 0.99579 0.97699 0.82084 1.22541 0.94859 0.99067 0.96335 0.88158 0.93781 0.79965 0.92497 0.88974 0.89338 0.94363 0.89100 0.89852 0.89095 0.87939 0.82251 0.91418 0.84005 0.84110 0.90482 0.94128 0.93527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -66.44 13.97 21.65 0.30 -66.14 16 2 C -0.07 -4.33 5.50 84.86 0.47 -3.87 16 3 Si 0.95 46.46 27.74 68.60 1.90 48.36 16 4 H -0.28 -13.73 7.11 99.48 0.71 -13.03 16 5 H -0.30 -15.05 7.11 99.48 0.71 -14.34 16 6 H -0.24 -10.44 6.52 99.48 0.65 -9.79 16 7 C -0.21 -11.95 8.64 84.03 0.73 -11.23 16 8 H 0.05 3.17 7.81 -2.91 -0.02 3.15 16 9 N -0.74 -32.82 3.73 -324.01 -1.21 -34.03 16 10 C 0.18 6.29 3.03 44.76 0.14 6.43 16 11 H 0.04 1.58 8.07 -2.39 -0.02 1.56 16 12 C -0.12 -2.84 5.51 30.78 0.17 -2.67 16 13 C -0.12 -2.41 5.61 30.77 0.17 -2.23 16 14 C -0.09 -1.56 5.70 30.41 0.17 -1.38 16 15 C -0.10 -2.64 2.35 -10.33 -0.02 -2.67 16 16 H 0.06 1.97 6.75 -2.39 -0.02 1.95 16 17 C 0.11 2.60 6.16 85.98 0.53 3.13 16 18 N -0.61 -21.26 3.38 -811.40 -2.74 -24.00 16 19 C 0.53 20.05 7.65 87.66 0.67 20.72 16 20 O -0.60 -29.35 16.60 -3.05 -0.05 -29.40 16 21 C -0.19 -4.73 5.29 -11.54 -0.06 -4.79 16 22 C -0.15 -3.42 10.24 30.62 0.31 -3.11 16 23 C -0.14 -3.25 10.05 30.61 0.31 -2.94 16 24 C 0.11 4.45 6.64 86.08 0.57 5.02 16 25 C -0.11 -3.25 2.16 -10.36 -0.02 -3.27 16 26 H 0.10 2.41 7.93 -2.39 -0.02 2.39 16 27 H 0.25 16.32 8.31 -92.71 -0.77 15.55 16 28 H 0.37 15.64 3.97 -92.71 -0.37 15.27 16 29 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.04 0.96 7.04 -2.38 -0.02 0.94 16 33 H 0.09 1.17 7.99 -2.39 -0.02 1.15 16 34 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.09 1.80 7.73 -2.39 -0.02 1.78 16 36 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 37 H 0.16 2.64 7.80 -2.39 -0.02 2.63 16 38 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.14 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.14 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.08 2.23 7.67 -2.39 -0.02 2.21 16 42 H 0.04 2.11 5.84 -2.39 -0.01 2.10 16 43 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 Total: -1.00 -82.19 330.85 2.90 -79.29 By element: Atomic # 1 Polarization: 28.22 SS G_CDS: 0.57 Total: 28.78 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 4.13 Total: -2.87 kcal Atomic # 7 Polarization: -120.52 SS G_CDS: -3.65 Total: -124.17 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -0.05 Total: -29.40 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 1.90 Total: 48.36 kcal Total: -82.19 2.90 -79.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992563596.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.511 kcal (2) G-P(sol) polarization free energy of solvation -82.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds