Wall clock time and date at job start Tue Mar 31 2020 00:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00245 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00055 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08004 * 119.99562 * 179.72386 * 7 2 1 9 9 N 1.36935 * 120.00368 * 359.72375 * 7 2 1 10 10 C 1.46498 * 120.00239 * 180.02562 * 9 7 2 11 11 C 1.53036 * 109.45719 * 275.02703 * 10 9 7 12 12 C 1.53196 * 109.31176 * 178.59826 * 11 10 9 13 13 N 1.46928 * 108.76460 * 54.65737 * 12 11 10 14 14 C 1.34775 * 120.63291 * 126.40392 * 13 12 11 15 15 O 1.21280 * 119.99906 * 179.97438 * 14 13 12 16 16 C 1.50692 * 119.99892 * 359.97438 * 14 13 12 17 17 C 1.53000 * 119.29783 * 250.51842 * 16 14 13 18 18 C 1.53001 * 60.38038 * 248.69423 * 17 16 14 19 19 H 1.08997 * 119.29611 * 111.30451 * 18 17 16 20 20 C 1.54264 * 118.20122 * 266.38463 * 18 17 16 21 21 C 1.54892 * 104.19655 * 87.78897 * 20 18 17 22 22 C 1.54267 * 117.41545 * 46.17964 * 16 14 13 23 23 C 1.46930 * 118.73512 * 306.38172 * 13 12 11 24 24 C 1.53036 * 109.45985 * 154.96900 * 10 9 7 25 25 H 0.97000 * 120.00481 * 179.97438 * 1 2 3 26 26 H 0.97004 * 120.00013 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.45758 * 34.99606 * 10 9 7 28 28 H 1.09001 * 109.49857 * 298.56197 * 11 10 9 29 29 H 1.09001 * 109.50232 * 58.66293 * 11 10 9 30 30 H 1.09000 * 109.59850 * 294.86755 * 12 11 10 31 31 H 1.09002 * 109.58214 * 174.43288 * 12 11 10 32 32 H 1.08998 * 117.46200 * 356.29132 * 17 16 14 33 33 H 1.09003 * 117.45718 * 141.10090 * 17 16 14 34 34 H 1.09003 * 110.48758 * 206.46692 * 20 18 17 35 35 H 1.09003 * 110.48844 * 328.97333 * 20 18 17 36 36 H 1.08993 * 110.75551 * 80.37453 * 21 20 18 37 37 H 1.08996 * 110.75438 * 203.56029 * 21 20 18 38 38 H 1.08999 * 110.48488 * 235.04552 * 22 16 14 39 39 H 1.09003 * 110.48321 * 357.68317 * 22 16 14 40 40 H 1.09006 * 109.58730 * 293.82159 * 23 13 12 41 41 H 1.09004 * 109.58387 * 173.39496 * 23 13 12 42 42 H 1.08992 * 109.49961 * 301.33214 * 24 10 9 43 43 H 1.08997 * 109.49849 * 61.43841 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6963 1.2126 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0058 8 1 3.0902 -1.2022 -0.0104 9 7 1.3255 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 6 2.4169 -4.0319 -1.4511 12 6 3.2128 -5.3408 -1.4502 13 7 2.4382 -6.3645 -0.7355 14 6 2.1678 -7.5506 -1.3156 15 8 1.5278 -8.3875 -0.7149 16 6 2.6606 -7.8368 -2.7106 17 6 1.6538 -7.9081 -3.8604 18 6 2.3696 -9.1803 -3.4021 19 1 1.7987 -9.9629 -2.9024 20 6 3.6656 -9.5905 -4.1312 21 6 4.7849 -8.8401 -3.3676 22 6 4.1278 -7.4847 -3.0318 23 6 1.9645 -6.0707 0.6240 24 6 1.1829 -4.7534 0.5999 25 1 -0.4851 -0.8400 -0.0004 26 1 0.3555 -2.3881 -0.0015 27 1 2.9709 -3.5516 0.5747 28 1 1.5036 -4.1616 -2.0318 29 1 3.0205 -3.2396 -1.8939 30 1 4.1677 -5.1877 -0.9474 31 1 3.3857 -5.6640 -2.4768 32 1 0.5975 -7.8079 -3.6106 33 1 1.9526 -7.4803 -4.8174 34 1 3.8155 -10.6682 -4.0657 35 1 3.6336 -9.2736 -5.1737 36 1 5.0490 -9.3687 -2.4517 37 1 5.6618 -8.7062 -4.0010 38 1 4.1811 -6.8262 -3.8988 39 1 4.6064 -7.0208 -2.1693 40 1 2.8177 -5.9772 1.2960 41 1 1.3138 -6.8755 0.9660 42 1 0.9082 -4.4747 1.6172 43 1 0.2813 -4.8763 -0.0003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996825705.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:25 Heat of formation + Delta-G solvation = 0.879038 kcal Electronic energy + Delta-G solvation = -22402.012174 eV Core-core repulsion = 19254.839134 eV Total energy + Delta-G solvation = -3147.173040 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.89755 -38.73930 -37.20270 -34.73468 -32.26574 -31.92076 -31.06968 -29.14937 -28.42675 -25.08423 -23.54155 -23.18850 -22.53613 -21.44954 -20.68497 -19.77161 -18.60669 -17.29447 -16.82181 -16.25249 -15.51765 -14.97932 -14.70689 -14.60649 -14.05469 -13.73993 -13.64616 -13.49915 -13.33597 -13.18402 -13.08570 -12.43681 -12.15047 -11.92765 -11.67897 -11.32719 -11.23233 -11.13061 -10.93668 -10.85741 -10.57775 -10.55626 -10.42151 -10.07941 -9.98645 -9.89767 -9.57823 -9.19245 -8.92372 -8.51003 -7.06707 -6.12235 -3.12575 2.53851 3.01381 3.45949 3.49569 3.52979 3.70681 4.16733 4.38710 4.46182 4.58147 4.64562 4.95982 5.04194 5.11706 5.14826 5.22389 5.26081 5.34237 5.36124 5.41542 5.51278 5.52658 5.57463 5.58029 5.67264 5.71486 5.78747 5.81288 5.88741 5.96108 5.97060 6.11245 6.15116 6.24429 6.32006 6.41036 6.57087 6.82315 6.95852 7.51249 7.77661 8.24820 8.73282 9.20176 10.06689 10.22003 11.36028 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029728 B = 0.003878 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.654472 B = 7218.937814 C = 7602.161567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.045 4.045 3 Si 1.079 2.921 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.332 4.332 8 H 0.064 0.936 9 N -0.736 5.736 10 C 0.184 3.816 11 C -0.150 4.150 12 C 0.100 3.900 13 N -0.600 5.600 14 C 0.557 3.443 15 O -0.551 6.551 16 C -0.175 4.175 17 C -0.121 4.121 18 C -0.130 4.130 19 H 0.118 0.882 20 C -0.096 4.096 21 C -0.124 4.124 22 C -0.090 4.090 23 C 0.116 3.884 24 C -0.140 4.140 25 H 0.255 0.745 26 H 0.366 0.634 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.983 -17.614 -7.664 21.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.242 4.242 3 Si 0.910 3.090 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.463 4.463 8 H 0.082 0.918 9 N -0.378 5.378 10 C 0.074 3.926 11 C -0.191 4.191 12 C -0.023 4.023 13 N -0.332 5.332 14 C 0.345 3.655 15 O -0.430 6.430 16 C -0.178 4.178 17 C -0.159 4.159 18 C -0.149 4.149 19 H 0.136 0.864 20 C -0.133 4.133 21 C -0.162 4.162 22 C -0.128 4.128 23 C -0.006 4.006 24 C -0.179 4.179 25 H 0.066 0.934 26 H 0.200 0.800 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.108 0.892 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.106 0.894 42 H 0.093 0.907 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.725 -16.333 -7.298 19.904 hybrid contribution -0.125 -1.493 0.045 1.499 sum 8.600 -17.827 -7.252 21.079 Atomic orbital electron populations 1.70880 1.06070 1.28463 1.53466 1.25769 0.97042 1.00996 1.00433 0.83252 0.74228 0.75673 0.75836 1.21045 1.22272 1.22271 1.20029 0.91950 0.85771 1.48527 0.91767 1.42449 1.04808 1.00722 1.89790 1.20105 0.94360 0.85529 0.92613 1.22648 1.00060 0.94922 1.01450 1.22165 0.94283 0.88502 0.97337 1.48038 1.54054 1.14702 1.16436 1.19346 0.78842 0.81255 0.86040 1.90654 1.41134 1.46384 1.64823 1.22291 0.97104 1.05738 0.92708 1.23102 0.97218 0.99244 0.96296 1.23356 0.99418 0.90592 1.01498 0.86408 1.21987 0.92160 1.00386 0.98773 1.22605 0.97756 0.95507 1.00286 1.22070 0.90959 0.97737 1.02010 1.21607 0.98764 0.97927 0.82334 1.22215 0.99209 0.94358 1.02068 0.93371 0.80043 0.93353 0.92370 0.90665 0.91669 0.89176 0.87942 0.87977 0.90978 0.91042 0.91325 0.90892 0.90487 0.90187 0.91563 0.89401 0.90665 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.09 13.70 55.49 0.76 -28.33 16 2 C -0.04 -1.29 5.50 -17.43 -0.10 -1.38 16 3 Si 1.08 25.61 29.92 -169.99 -5.09 20.53 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.30 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.30 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.33 -9.16 9.93 -15.06 -0.15 -9.31 16 8 H 0.06 1.73 7.83 -52.48 -0.41 1.32 16 9 N -0.74 -18.17 5.12 -53.39 -0.27 -18.44 16 10 C 0.18 3.58 2.73 -67.89 -0.19 3.39 16 11 C -0.15 -2.55 5.66 -26.61 -0.15 -2.70 16 12 C 0.10 1.34 4.83 -3.71 -0.02 1.32 16 13 N -0.60 -8.78 2.97 -172.76 -0.51 -9.29 16 14 C 0.56 8.47 7.34 -10.99 -0.08 8.39 16 15 O -0.55 -10.11 16.20 5.56 0.09 -10.02 16 16 C -0.18 -2.06 1.95 -154.54 -0.30 -2.36 16 17 C -0.12 -1.26 9.87 -26.73 -0.26 -1.52 16 18 C -0.13 -1.35 6.54 -89.50 -0.59 -1.94 16 19 H 0.12 1.35 8.14 -51.93 -0.42 0.93 16 20 C -0.10 -0.76 6.63 -25.07 -0.17 -0.93 16 21 C -0.12 -1.00 6.88 -25.04 -0.17 -1.17 16 22 C -0.09 -0.85 4.40 -25.37 -0.11 -0.96 16 23 C 0.12 1.74 6.43 -3.71 -0.02 1.72 16 24 C -0.14 -2.36 5.55 -26.61 -0.15 -2.51 16 25 H 0.26 7.77 6.77 -40.82 -0.28 7.49 16 26 H 0.37 9.46 6.63 -40.82 -0.27 9.19 16 27 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 30 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 31 H 0.09 1.04 4.36 -51.93 -0.23 0.82 16 32 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.63 7.91 -51.93 -0.41 0.22 16 39 H 0.08 0.78 6.26 -51.93 -0.32 0.45 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.09 1.36 7.01 -51.93 -0.36 1.00 16 42 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 334.15 15.07 5.04 5.04 Total: -1.00 -32.60 334.15 -9.43 -42.04 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -6.99 Total: 8.43 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -2.45 Total: -9.95 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: -0.03 Total: -56.06 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 14 Polarization: 25.61 SS G_CDS: -5.09 Total: 20.53 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.60 -9.43 -42.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996825705.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.914 kcal (2) G-P(sol) polarization free energy of solvation -32.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds