Wall clock time and date at job start Tue Mar 31 2020 00:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00245 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00055 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08004 * 119.99562 * 179.72386 * 7 2 1 9 9 N 1.36935 * 120.00368 * 359.72375 * 7 2 1 10 10 C 1.46498 * 120.00239 * 180.02562 * 9 7 2 11 11 C 1.53036 * 109.45719 * 275.02703 * 10 9 7 12 12 C 1.53196 * 109.31176 * 178.59826 * 11 10 9 13 13 N 1.46928 * 108.76460 * 54.65737 * 12 11 10 14 14 C 1.34775 * 120.63291 * 126.40392 * 13 12 11 15 15 O 1.21280 * 119.99906 * 179.97438 * 14 13 12 16 16 C 1.50692 * 119.99892 * 359.97438 * 14 13 12 17 17 C 1.53000 * 119.29783 * 250.51842 * 16 14 13 18 18 C 1.53001 * 60.38038 * 248.69423 * 17 16 14 19 19 H 1.08997 * 119.29611 * 111.30451 * 18 17 16 20 20 C 1.54264 * 118.20122 * 266.38463 * 18 17 16 21 21 C 1.54892 * 104.19655 * 87.78897 * 20 18 17 22 22 C 1.54267 * 117.41545 * 46.17964 * 16 14 13 23 23 C 1.46930 * 118.73512 * 306.38172 * 13 12 11 24 24 C 1.53036 * 109.45985 * 154.96900 * 10 9 7 25 25 H 0.97000 * 120.00481 * 179.97438 * 1 2 3 26 26 H 0.97004 * 120.00013 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.45758 * 34.99606 * 10 9 7 28 28 H 1.09001 * 109.49857 * 298.56197 * 11 10 9 29 29 H 1.09001 * 109.50232 * 58.66293 * 11 10 9 30 30 H 1.09000 * 109.59850 * 294.86755 * 12 11 10 31 31 H 1.09002 * 109.58214 * 174.43288 * 12 11 10 32 32 H 1.08998 * 117.46200 * 356.29132 * 17 16 14 33 33 H 1.09003 * 117.45718 * 141.10090 * 17 16 14 34 34 H 1.09003 * 110.48758 * 206.46692 * 20 18 17 35 35 H 1.09003 * 110.48844 * 328.97333 * 20 18 17 36 36 H 1.08993 * 110.75551 * 80.37453 * 21 20 18 37 37 H 1.08996 * 110.75438 * 203.56029 * 21 20 18 38 38 H 1.08999 * 110.48488 * 235.04552 * 22 16 14 39 39 H 1.09003 * 110.48321 * 357.68317 * 22 16 14 40 40 H 1.09006 * 109.58730 * 293.82159 * 23 13 12 41 41 H 1.09004 * 109.58387 * 173.39496 * 23 13 12 42 42 H 1.08992 * 109.49961 * 301.33214 * 24 10 9 43 43 H 1.08997 * 109.49849 * 61.43841 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6963 1.2126 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0058 8 1 3.0902 -1.2022 -0.0104 9 7 1.3255 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 6 2.4169 -4.0319 -1.4511 12 6 3.2128 -5.3408 -1.4502 13 7 2.4382 -6.3645 -0.7355 14 6 2.1678 -7.5506 -1.3156 15 8 1.5278 -8.3875 -0.7149 16 6 2.6606 -7.8368 -2.7106 17 6 1.6538 -7.9081 -3.8604 18 6 2.3696 -9.1803 -3.4021 19 1 1.7987 -9.9629 -2.9024 20 6 3.6656 -9.5905 -4.1312 21 6 4.7849 -8.8401 -3.3676 22 6 4.1278 -7.4847 -3.0318 23 6 1.9645 -6.0707 0.6240 24 6 1.1829 -4.7534 0.5999 25 1 -0.4851 -0.8400 -0.0004 26 1 0.3555 -2.3881 -0.0015 27 1 2.9709 -3.5516 0.5747 28 1 1.5036 -4.1616 -2.0318 29 1 3.0205 -3.2396 -1.8939 30 1 4.1677 -5.1877 -0.9474 31 1 3.3857 -5.6640 -2.4768 32 1 0.5975 -7.8079 -3.6106 33 1 1.9526 -7.4803 -4.8174 34 1 3.8155 -10.6682 -4.0657 35 1 3.6336 -9.2736 -5.1737 36 1 5.0490 -9.3687 -2.4517 37 1 5.6618 -8.7062 -4.0010 38 1 4.1811 -6.8262 -3.8988 39 1 4.6064 -7.0208 -2.1693 40 1 2.8177 -5.9772 1.2960 41 1 1.3138 -6.8755 0.9660 42 1 0.9082 -4.4747 1.6172 43 1 0.2813 -4.8763 -0.0003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996825705.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:23 Heat of formation + Delta-G solvation = -18.746451 kcal Electronic energy + Delta-G solvation = -22402.863199 eV Core-core repulsion = 19254.839134 eV Total energy + Delta-G solvation = -3148.024065 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -41.92161 -39.83330 -38.55177 -36.46855 -34.00292 -32.63371 -32.38083 -30.85285 -29.31535 -26.63106 -25.05702 -24.51748 -23.65259 -22.62911 -21.53977 -20.98726 -19.72504 -19.32820 -17.90146 -17.42459 -16.70791 -16.33980 -16.04853 -15.88246 -15.54605 -15.36856 -15.01560 -14.65011 -14.35333 -14.15978 -13.96607 -13.79026 -13.34077 -13.32462 -12.82519 -12.68150 -12.44436 -12.31434 -12.12176 -12.02412 -11.90239 -11.82614 -11.75773 -11.63356 -11.37178 -11.17086 -10.92100 -10.69625 -10.66097 -9.76934 -9.12695 -8.37802 -5.32380 1.40842 1.59572 1.69557 1.85496 1.88365 2.59414 2.72654 3.35581 3.41572 3.49140 3.59771 3.63164 3.80666 3.85307 3.98479 4.07868 4.21606 4.23789 4.28345 4.41423 4.45103 4.51455 4.60603 4.67945 4.70756 4.71840 4.73628 4.80817 4.88608 4.93900 4.95409 5.00878 5.14251 5.19896 5.20258 5.26585 5.40038 5.45748 5.52838 5.61313 6.33693 6.49411 7.06138 7.09165 7.98986 8.12352 9.13907 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029728 B = 0.003878 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.654472 B = 7218.937814 C = 7602.161567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.107 4.107 3 Si 1.127 2.873 4 H -0.297 1.297 5 H -0.278 1.278 6 H -0.275 1.275 7 C -0.326 4.326 8 H 0.071 0.929 9 N -0.751 5.751 10 C 0.178 3.822 11 C -0.139 4.139 12 C 0.110 3.890 13 N -0.602 5.602 14 C 0.550 3.450 15 O -0.591 6.591 16 C -0.191 4.191 17 C -0.116 4.116 18 C -0.129 4.129 19 H 0.099 0.901 20 C -0.090 4.090 21 C -0.120 4.120 22 C -0.089 4.089 23 C 0.122 3.878 24 C -0.127 4.127 25 H 0.242 0.758 26 H 0.356 0.644 27 H 0.048 0.952 28 H 0.042 0.958 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.116 0.884 32 H 0.086 0.914 33 H 0.128 0.872 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.058 0.942 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.683 -18.216 -9.126 23.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.627 5.627 2 C -0.298 4.298 3 Si 0.952 3.048 4 H -0.223 1.223 5 H -0.204 1.204 6 H -0.201 1.201 7 C -0.458 4.458 8 H 0.089 0.911 9 N -0.392 5.392 10 C 0.070 3.930 11 C -0.179 4.179 12 C -0.012 4.012 13 N -0.333 5.333 14 C 0.340 3.660 15 O -0.472 6.472 16 C -0.194 4.194 17 C -0.154 4.154 18 C -0.148 4.148 19 H 0.117 0.883 20 C -0.127 4.127 21 C -0.158 4.158 22 C -0.126 4.126 23 C -0.001 4.001 24 C -0.166 4.166 25 H 0.052 0.948 26 H 0.187 0.813 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.134 0.866 32 H 0.104 0.896 33 H 0.146 0.854 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.077 0.923 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.090 0.910 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.475 -16.985 -8.770 22.295 hybrid contribution -1.000 -1.406 0.542 1.809 sum 10.475 -18.391 -8.228 22.708 Atomic orbital electron populations 1.70997 1.07354 1.27775 1.56592 1.27198 0.97049 1.04744 1.00772 0.82635 0.73355 0.71557 0.77243 1.22309 1.20368 1.20083 1.20389 0.92415 0.86793 1.46159 0.91096 1.42693 1.04546 1.01935 1.90037 1.20355 0.94118 0.84182 0.94355 1.22431 0.99808 0.96788 0.98911 1.22206 0.93864 0.86017 0.99121 1.48124 1.53949 1.14971 1.16234 1.20024 0.78010 0.80728 0.87223 1.90629 1.42897 1.47581 1.66120 1.22401 0.98848 1.07343 0.90835 1.23182 0.96211 0.99273 0.96701 1.23459 1.00314 0.89805 1.01179 0.88319 1.22021 0.90348 1.00989 0.99341 1.22602 0.98403 0.94450 1.00314 1.22129 0.88894 0.98940 1.02658 1.21516 0.99107 0.96200 0.83314 1.22060 0.98520 0.94729 1.01340 0.94758 0.81252 0.93387 0.93894 0.91516 0.89667 0.86612 0.89551 0.85419 0.90202 0.89209 0.92330 0.88586 0.88558 0.90447 0.89689 0.90043 0.90994 0.93402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.62 13.70 21.65 0.30 -61.32 16 2 C -0.11 -6.16 5.50 84.86 0.47 -5.69 16 3 Si 1.13 51.22 29.92 68.60 2.05 53.27 16 4 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 5 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.33 -17.96 9.93 84.03 0.83 -17.12 16 8 H 0.07 3.74 7.83 -2.91 -0.02 3.72 16 9 N -0.75 -37.54 5.12 -322.83 -1.65 -39.20 16 10 C 0.18 6.86 2.73 45.02 0.12 6.99 16 11 C -0.14 -4.58 5.66 30.67 0.17 -4.41 16 12 C 0.11 2.69 4.83 86.36 0.42 3.11 16 13 N -0.60 -16.86 2.97 -818.87 -2.43 -19.29 16 14 C 0.55 16.33 7.34 87.65 0.64 16.98 16 15 O -0.59 -21.92 16.20 -3.03 -0.05 -21.97 16 16 C -0.19 -4.13 1.95 -52.20 -0.10 -4.23 16 17 C -0.12 -2.22 9.87 30.59 0.30 -1.91 16 18 C -0.13 -2.48 6.54 -10.07 -0.07 -2.54 16 19 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 20 C -0.09 -1.14 6.63 31.67 0.21 -0.93 16 21 C -0.12 -1.51 6.88 31.69 0.22 -1.30 16 22 C -0.09 -1.36 4.40 31.47 0.14 -1.22 16 23 C 0.12 3.56 6.43 86.36 0.56 4.12 16 24 C -0.13 -4.34 5.55 30.67 0.17 -4.17 16 25 H 0.24 15.28 6.77 -92.71 -0.63 14.65 16 26 H 0.36 19.02 6.63 -92.71 -0.61 18.41 16 27 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 28 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.09 1.82 8.12 -2.39 -0.02 1.80 16 31 H 0.12 2.30 4.36 -2.39 -0.01 2.29 16 32 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.10 1.13 7.91 -2.39 -0.02 1.11 16 39 H 0.08 1.23 6.26 -2.39 -0.01 1.22 16 40 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 41 H 0.08 2.53 7.01 -2.38 -0.02 2.52 16 42 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 43 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -71.69 334.15 2.82 -68.87 By element: Atomic # 1 Polarization: 31.45 SS G_CDS: 0.52 Total: 31.98 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: 4.09 Total: -12.34 kcal Atomic # 7 Polarization: -116.02 SS G_CDS: -3.79 Total: -119.81 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.05 Total: -21.97 kcal Atomic # 14 Polarization: 51.22 SS G_CDS: 2.05 Total: 53.27 kcal Total: -71.69 2.82 -68.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996825705.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.121 kcal (2) G-P(sol) polarization free energy of solvation -71.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds