Wall clock time and date at job start Tue Mar 31 2020 00:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99907 * 2 1 4 4 H 1.48498 * 109.47385 * 270.00250 * 3 2 1 5 5 H 1.48499 * 109.47397 * 30.00465 * 3 2 1 6 6 H 1.48500 * 109.47298 * 150.00283 * 3 2 1 7 7 C 1.38807 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00012 * 359.97438 * 7 2 1 9 9 N 1.36938 * 120.00409 * 179.97438 * 7 2 1 10 10 C 1.46498 * 120.00237 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.49694 * 34.93796 * 10 9 7 12 12 C 1.53109 * 109.49311 * 274.85992 * 10 9 7 13 13 C 1.53036 * 109.50477 * 178.69982 * 12 10 9 14 14 C 1.53187 * 109.33909 * 61.34678 * 13 12 10 15 15 N 1.46931 * 108.77858 * 305.34763 * 14 13 12 16 16 C 1.34772 * 120.63173 * 233.63340 * 15 14 13 17 17 O 1.21277 * 119.99811 * 179.97438 * 16 15 14 18 18 C 1.50704 * 120.00006 * 359.97438 * 16 15 14 19 19 H 1.08999 * 115.52362 * 34.50721 * 18 16 15 20 20 C 1.53005 * 117.45858 * 180.02562 * 18 16 15 21 21 H 1.08992 * 119.29794 * 355.35662 * 20 18 16 22 22 C 1.54264 * 118.19558 * 201.21754 * 20 18 16 23 23 C 1.54888 * 104.19470 * 272.21129 * 22 20 18 24 24 C 1.54895 * 102.75145 * 37.94169 * 23 22 20 25 25 C 1.52999 * 117.46021 * 249.04203 * 18 16 15 26 26 H 1.08997 * 119.30040 * 3.71378 * 25 18 16 27 27 C 1.46925 * 118.73466 * 53.60925 * 15 14 13 28 28 H 0.97003 * 120.00059 * 359.97438 * 1 2 3 29 29 H 0.97001 * 119.99757 * 0.02562 * 9 7 2 30 30 H 1.08997 * 109.50059 * 58.66920 * 12 10 9 31 31 H 1.09003 * 109.44365 * 298.69596 * 12 10 9 32 32 H 1.09002 * 109.49886 * 301.37799 * 13 12 10 33 33 H 1.09000 * 109.49395 * 181.31276 * 13 12 10 34 34 H 1.09004 * 109.58908 * 65.13475 * 14 13 12 35 35 H 1.09003 * 109.58748 * 185.41538 * 14 13 12 36 36 H 1.09002 * 110.48950 * 30.88610 * 22 20 18 37 37 H 1.08996 * 110.48627 * 153.53143 * 22 20 18 38 38 H 1.08998 * 110.76085 * 156.25731 * 23 22 20 39 39 H 1.09008 * 110.75599 * 279.63172 * 23 22 20 40 40 H 1.09000 * 110.48312 * 80.73288 * 24 23 22 41 41 H 1.09001 * 110.48757 * 203.24836 * 24 23 22 42 42 H 1.08995 * 109.58986 * 66.17814 * 27 15 14 43 43 H 1.09003 * 109.58612 * 186.60908 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3797 -1.2021 -0.0011 10 6 4.1122 -2.4708 -0.0011 11 1 3.5644 -3.2072 -0.5891 12 6 4.2623 -2.9741 1.4371 13 6 4.9990 -4.3155 1.4348 14 6 6.3979 -4.1249 0.8403 15 7 6.2678 -3.5063 -0.4861 16 6 6.8406 -4.0722 -1.5669 17 8 6.7256 -3.5521 -2.6564 18 6 7.6240 -5.3514 -1.4215 19 1 7.2496 -6.0489 -0.6722 20 6 8.2501 -5.9429 -2.6861 21 1 8.0506 -5.4739 -3.6495 22 6 8.6116 -7.4426 -2.6876 23 6 10.0483 -7.4875 -2.1107 24 6 10.0100 -6.3959 -1.0124 25 6 9.1391 -5.2775 -1.6216 26 1 9.6071 -4.3092 -1.7989 27 6 5.5010 -2.2594 -0.6119 28 1 -0.4850 0.8401 0.0004 29 1 3.8647 -0.3621 -0.0007 30 1 3.2758 -3.1023 1.8826 31 1 4.8312 -2.2482 2.0181 32 1 4.4431 -5.0349 0.8335 33 1 5.0852 -4.6849 2.4567 34 1 6.9858 -3.4763 1.4898 35 1 6.8906 -5.0928 0.7477 36 1 7.9267 -8.0008 -2.0493 37 1 8.5958 -7.8378 -3.7032 38 1 10.2601 -8.4647 -1.6767 39 1 10.7808 -7.2375 -2.8783 40 1 9.5508 -6.7850 -0.1037 41 1 11.0150 -6.0289 -0.8040 42 1 6.0157 -1.4587 -0.0807 43 1 5.4009 -1.9966 -1.6650 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998839994.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:02 Heat of formation + Delta-G solvation = -1.334545 kcal Electronic energy + Delta-G solvation = -21999.227817 eV Core-core repulsion = 18851.958789 eV Total energy + Delta-G solvation = -3147.269028 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.66968 -38.98385 -37.19455 -34.63244 -32.32687 -31.93458 -31.36151 -28.96763 -28.53246 -25.75453 -24.22594 -22.97248 -21.94106 -21.00516 -19.99733 -19.92409 -18.90501 -17.64211 -17.35348 -16.21403 -15.46820 -15.12607 -14.69910 -14.57243 -14.06240 -13.99168 -13.65720 -13.47722 -13.36102 -12.98796 -12.74002 -12.65967 -12.46514 -11.74340 -11.57605 -11.44984 -11.38620 -11.16732 -11.08247 -11.00882 -10.69993 -10.51499 -10.42489 -10.31990 -10.09683 -9.98995 -9.63843 -9.58001 -8.94180 -8.46973 -7.30184 -5.78131 -3.14756 2.47172 2.97805 3.37636 3.41059 3.45701 3.52391 4.13874 4.42515 4.46048 4.58415 4.70112 4.85748 4.89974 4.96128 5.07353 5.14490 5.16478 5.26369 5.28934 5.37757 5.41354 5.48397 5.51852 5.54223 5.64575 5.70691 5.72520 5.77380 5.82159 5.92468 5.99418 6.03318 6.10497 6.13122 6.30855 6.44625 6.60657 6.78848 6.94093 7.51546 7.96742 8.27197 8.40297 9.17871 9.90287 10.09222 11.40001 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034624 B = 0.003649 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.491156 B = 7672.317164 C = 7909.551110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.244 4.244 8 H 0.091 0.909 9 N -0.745 5.745 10 C 0.173 3.827 11 H 0.059 0.941 12 C -0.138 4.138 13 C -0.134 4.134 14 C 0.108 3.892 15 N -0.600 5.600 16 C 0.543 3.457 17 O -0.542 6.542 18 C -0.161 4.161 19 H 0.121 0.879 20 C -0.132 4.132 21 H 0.122 0.878 22 C -0.097 4.097 23 C -0.123 4.123 24 C -0.095 4.095 25 C -0.138 4.138 26 H 0.113 0.887 27 C 0.103 3.897 28 H 0.260 0.740 29 H 0.361 0.639 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.463 -15.291 0.998 26.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.190 4.190 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.373 4.373 8 H 0.108 0.892 9 N -0.388 5.388 10 C 0.062 3.938 11 H 0.077 0.923 12 C -0.178 4.178 13 C -0.173 4.173 14 C -0.015 4.015 15 N -0.333 5.333 16 C 0.331 3.669 17 O -0.419 6.419 18 C -0.182 4.182 19 H 0.139 0.861 20 C -0.150 4.150 21 H 0.140 0.860 22 C -0.135 4.135 23 C -0.161 4.161 24 C -0.133 4.133 25 C -0.157 4.157 26 H 0.131 0.869 27 C -0.020 4.020 28 H 0.070 0.930 29 H 0.194 0.806 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.081 0.919 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 21.135 -15.054 0.399 25.951 hybrid contribution 0.345 1.345 0.253 1.412 sum 21.480 -13.708 0.653 25.490 Atomic orbital electron populations 1.69701 1.05110 1.25882 1.57360 1.24664 0.95233 0.97224 1.01876 0.86554 0.79168 0.84939 0.77886 1.20966 1.21719 1.20317 1.19035 0.80290 0.94759 1.43241 0.89168 1.42673 1.04098 1.01716 1.90287 1.20468 0.90038 0.89659 0.93593 0.92298 1.22255 1.00620 0.94782 1.00136 1.21945 0.95370 0.99377 1.00631 1.21806 0.97978 0.98215 0.83505 1.47976 1.51998 1.25629 1.07704 1.19550 0.79004 0.84654 0.83731 1.90692 1.61106 1.64089 1.26011 1.22391 0.95292 0.97922 1.02560 0.86085 1.23247 1.02297 0.95303 0.94178 0.86011 1.22011 0.96272 0.93571 1.01638 1.22701 0.96926 0.98568 0.97879 1.21999 0.99195 0.94023 0.98061 1.23223 0.89032 1.00509 1.02940 0.86878 1.22010 0.92141 0.84512 1.03327 0.93008 0.80599 0.91059 0.92583 0.91658 0.91166 0.91420 0.89987 0.91199 0.90837 0.91187 0.91154 0.91149 0.90909 0.91874 0.88825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.43 13.97 55.49 0.78 -28.65 16 2 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 3 Si 0.88 22.24 27.73 -169.99 -4.71 17.52 16 4 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 7 C -0.24 -6.88 10.41 -15.06 -0.16 -7.03 16 8 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 9 N -0.75 -17.69 4.93 -53.27 -0.26 -17.95 16 10 C 0.17 3.36 2.92 -67.77 -0.20 3.16 16 11 H 0.06 1.25 8.08 -51.93 -0.42 0.83 16 12 C -0.14 -2.27 5.47 -26.66 -0.15 -2.42 16 13 C -0.13 -1.65 6.08 -26.62 -0.16 -1.82 16 14 C 0.11 1.20 6.34 -3.71 -0.02 1.18 16 15 N -0.60 -8.73 2.97 -172.77 -0.51 -9.24 16 16 C 0.54 8.24 7.48 -10.99 -0.08 8.16 16 17 O -0.54 -10.35 15.74 5.56 0.09 -10.26 16 18 C -0.16 -1.77 4.67 -91.77 -0.43 -2.20 16 19 H 0.12 1.11 6.57 -51.93 -0.34 0.77 16 20 C -0.13 -1.37 6.39 -89.52 -0.57 -1.94 16 21 H 0.12 1.48 7.78 -51.93 -0.40 1.08 16 22 C -0.10 -0.75 6.62 -25.07 -0.17 -0.91 16 23 C -0.12 -0.78 6.91 -24.74 -0.17 -0.95 16 24 C -0.10 -0.65 6.63 -25.06 -0.17 -0.82 16 25 C -0.14 -1.31 6.64 -89.52 -0.59 -1.90 16 26 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 27 C 0.10 1.77 5.91 -3.71 -0.02 1.75 16 28 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 29 H 0.36 8.41 5.66 -40.82 -0.23 8.18 16 30 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.71 5.52 -51.93 -0.29 0.42 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.44 8.14 -51.92 -0.42 0.01 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.09 1.81 7.01 -51.93 -0.36 1.45 16 LS Contribution 336.89 15.07 5.08 5.08 Total: -1.00 -33.01 336.89 -9.67 -42.68 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -7.13 Total: 6.51 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -2.98 Total: -5.68 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: 0.00 Total: -55.84 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.26 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.71 Total: 17.52 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.01 -9.67 -42.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998839994.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.342 kcal (2) G-P(sol) polarization free energy of solvation -33.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds