Wall clock time and date at job start Tue Mar 31 2020 00:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99907 * 2 1 4 4 H 1.48498 * 109.47385 * 270.00250 * 3 2 1 5 5 H 1.48499 * 109.47397 * 30.00465 * 3 2 1 6 6 H 1.48500 * 109.47298 * 150.00283 * 3 2 1 7 7 C 1.38807 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00012 * 359.97438 * 7 2 1 9 9 N 1.36938 * 120.00409 * 179.97438 * 7 2 1 10 10 C 1.46498 * 120.00237 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.49694 * 34.93796 * 10 9 7 12 12 C 1.53109 * 109.49311 * 274.85992 * 10 9 7 13 13 C 1.53036 * 109.50477 * 178.69982 * 12 10 9 14 14 C 1.53187 * 109.33909 * 61.34678 * 13 12 10 15 15 N 1.46931 * 108.77858 * 305.34763 * 14 13 12 16 16 C 1.34772 * 120.63173 * 233.63340 * 15 14 13 17 17 O 1.21277 * 119.99811 * 179.97438 * 16 15 14 18 18 C 1.50704 * 120.00006 * 359.97438 * 16 15 14 19 19 H 1.08999 * 115.52362 * 34.50721 * 18 16 15 20 20 C 1.53005 * 117.45858 * 180.02562 * 18 16 15 21 21 H 1.08992 * 119.29794 * 355.35662 * 20 18 16 22 22 C 1.54264 * 118.19558 * 201.21754 * 20 18 16 23 23 C 1.54888 * 104.19470 * 272.21129 * 22 20 18 24 24 C 1.54895 * 102.75145 * 37.94169 * 23 22 20 25 25 C 1.52999 * 117.46021 * 249.04203 * 18 16 15 26 26 H 1.08997 * 119.30040 * 3.71378 * 25 18 16 27 27 C 1.46925 * 118.73466 * 53.60925 * 15 14 13 28 28 H 0.97003 * 120.00059 * 359.97438 * 1 2 3 29 29 H 0.97001 * 119.99757 * 0.02562 * 9 7 2 30 30 H 1.08997 * 109.50059 * 58.66920 * 12 10 9 31 31 H 1.09003 * 109.44365 * 298.69596 * 12 10 9 32 32 H 1.09002 * 109.49886 * 301.37799 * 13 12 10 33 33 H 1.09000 * 109.49395 * 181.31276 * 13 12 10 34 34 H 1.09004 * 109.58908 * 65.13475 * 14 13 12 35 35 H 1.09003 * 109.58748 * 185.41538 * 14 13 12 36 36 H 1.09002 * 110.48950 * 30.88610 * 22 20 18 37 37 H 1.08996 * 110.48627 * 153.53143 * 22 20 18 38 38 H 1.08998 * 110.76085 * 156.25731 * 23 22 20 39 39 H 1.09008 * 110.75599 * 279.63172 * 23 22 20 40 40 H 1.09000 * 110.48312 * 80.73288 * 24 23 22 41 41 H 1.09001 * 110.48757 * 203.24836 * 24 23 22 42 42 H 1.08995 * 109.58986 * 66.17814 * 27 15 14 43 43 H 1.09003 * 109.58612 * 186.60908 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3797 -1.2021 -0.0011 10 6 4.1122 -2.4708 -0.0011 11 1 3.5644 -3.2072 -0.5891 12 6 4.2623 -2.9741 1.4371 13 6 4.9990 -4.3155 1.4348 14 6 6.3979 -4.1249 0.8403 15 7 6.2678 -3.5063 -0.4861 16 6 6.8406 -4.0722 -1.5669 17 8 6.7256 -3.5521 -2.6564 18 6 7.6240 -5.3514 -1.4215 19 1 7.2496 -6.0489 -0.6722 20 6 8.2501 -5.9429 -2.6861 21 1 8.0506 -5.4739 -3.6495 22 6 8.6116 -7.4426 -2.6876 23 6 10.0483 -7.4875 -2.1107 24 6 10.0100 -6.3959 -1.0124 25 6 9.1391 -5.2775 -1.6216 26 1 9.6071 -4.3092 -1.7989 27 6 5.5010 -2.2594 -0.6119 28 1 -0.4850 0.8401 0.0004 29 1 3.8647 -0.3621 -0.0007 30 1 3.2758 -3.1023 1.8826 31 1 4.8312 -2.2482 2.0181 32 1 4.4431 -5.0349 0.8335 33 1 5.0852 -4.6849 2.4567 34 1 6.9858 -3.4763 1.4898 35 1 6.8906 -5.0928 0.7477 36 1 7.9267 -8.0008 -2.0493 37 1 8.5958 -7.8378 -3.7032 38 1 10.2601 -8.4647 -1.6767 39 1 10.7808 -7.2375 -2.8783 40 1 9.5508 -6.7850 -0.1037 41 1 11.0150 -6.0289 -0.8040 42 1 6.0157 -1.4587 -0.0807 43 1 5.4009 -1.9966 -1.6650 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998839994.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:02 Heat of formation + Delta-G solvation = -22.211373 kcal Electronic energy + Delta-G solvation = -22000.133104 eV Core-core repulsion = 18851.958789 eV Total energy + Delta-G solvation = -3148.174315 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.69105 -39.97294 -38.51061 -36.34736 -33.98635 -32.96076 -32.70278 -30.60955 -29.11511 -26.91690 -25.85973 -24.20231 -23.37336 -21.78228 -21.27319 -20.66759 -20.14059 -19.55185 -18.43752 -17.31565 -16.78881 -16.46152 -15.91851 -15.74536 -15.43138 -15.28916 -15.12801 -14.70128 -14.38519 -14.11183 -14.01692 -13.89240 -13.75234 -13.09269 -12.98421 -12.55139 -12.40421 -12.26427 -12.24439 -11.95930 -11.94525 -11.85264 -11.79014 -11.74410 -11.65599 -11.13055 -10.99296 -10.85885 -10.62289 -9.74705 -9.35123 -8.06299 -5.41256 1.34907 1.37150 1.39660 1.45994 1.85133 2.45242 2.68919 3.24214 3.31064 3.52813 3.70545 3.76457 3.83601 3.94412 4.05458 4.12692 4.15091 4.23583 4.28334 4.30409 4.50380 4.54839 4.56375 4.69754 4.71559 4.78473 4.85536 4.86514 4.99341 5.03437 5.12004 5.19640 5.25306 5.25846 5.30104 5.36513 5.43266 5.49990 5.53416 5.72424 6.16867 6.38058 7.01671 7.09869 7.76041 7.96316 9.15147 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034624 B = 0.003649 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.491156 B = 7672.317164 C = 7909.551110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.062 4.062 3 Si 0.956 3.044 4 H -0.282 1.282 5 H -0.293 1.293 6 H -0.248 1.248 7 C -0.231 4.231 8 H 0.054 0.946 9 N -0.749 5.749 10 C 0.169 3.831 11 H 0.029 0.971 12 C -0.130 4.130 13 C -0.126 4.126 14 C 0.106 3.894 15 N -0.600 5.600 16 C 0.534 3.466 17 O -0.593 6.593 18 C -0.162 4.162 19 H 0.149 0.851 20 C -0.147 4.147 21 H 0.092 0.908 22 C -0.093 4.093 23 C -0.119 4.119 24 C -0.089 4.089 25 C -0.125 4.125 26 H 0.100 0.900 27 C 0.113 3.887 28 H 0.259 0.741 29 H 0.366 0.634 30 H 0.043 0.957 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.118 0.882 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.028 -16.681 2.918 30.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.254 4.254 3 Si 0.783 3.217 4 H -0.209 1.209 5 H -0.219 1.219 6 H -0.172 1.172 7 C -0.362 4.362 8 H 0.072 0.928 9 N -0.393 5.393 10 C 0.061 3.939 11 H 0.047 0.953 12 C -0.170 4.170 13 C -0.164 4.164 14 C -0.015 4.015 15 N -0.331 5.331 16 C 0.324 3.676 17 O -0.474 6.474 18 C -0.183 4.183 19 H 0.167 0.833 20 C -0.166 4.166 21 H 0.110 0.890 22 C -0.131 4.131 23 C -0.156 4.156 24 C -0.126 4.126 25 C -0.144 4.144 26 H 0.119 0.881 27 C -0.011 4.011 28 H 0.068 0.932 29 H 0.200 0.800 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.123 0.877 34 H 0.107 0.893 35 H 0.136 0.864 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.108 0.892 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.098 0.902 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 24.763 -16.498 2.356 29.848 hybrid contribution -0.805 1.691 -0.406 1.916 sum 23.958 -14.807 1.951 28.232 Atomic orbital electron populations 1.69883 1.07153 1.26794 1.59516 1.25506 0.96138 1.01301 1.02441 0.85402 0.78839 0.79500 0.78000 1.20865 1.21906 1.17211 1.18944 0.82309 0.93383 1.41554 0.92836 1.42641 1.02585 1.03602 1.90479 1.20625 0.90495 0.87252 0.95554 0.95281 1.22077 1.00124 0.97701 0.97084 1.21910 0.95393 0.96309 1.02824 1.22119 0.97534 1.00279 0.81566 1.48090 1.51039 1.24717 1.09286 1.20369 0.78709 0.85585 0.82931 1.90667 1.63001 1.65732 1.28038 1.22375 0.95981 0.96071 1.03829 0.83325 1.23309 1.02977 0.97379 0.92902 0.89000 1.22040 0.97469 0.91284 1.02267 1.22705 0.95716 0.99467 0.97736 1.22054 0.99231 0.92819 0.98544 1.23335 0.88217 1.00855 1.01953 0.88149 1.21648 0.91338 0.86644 1.01435 0.93230 0.80034 0.93837 0.91463 0.92423 0.87659 0.89290 0.86435 0.90215 0.90697 0.89182 0.91260 0.89451 0.89706 0.90217 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.20 13.97 21.65 0.30 -63.89 16 2 C -0.06 -3.75 5.50 84.86 0.47 -3.29 16 3 Si 0.96 46.35 27.73 68.60 1.90 48.25 16 4 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 5 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.25 -10.70 6.52 99.48 0.65 -10.05 16 7 C -0.23 -13.52 10.41 84.03 0.87 -12.64 16 8 H 0.05 3.45 8.06 -2.91 -0.02 3.43 16 9 N -0.75 -36.01 4.93 -322.46 -1.59 -37.60 16 10 C 0.17 6.68 2.92 45.09 0.13 6.81 16 11 H 0.03 1.30 8.08 -2.39 -0.02 1.28 16 12 C -0.13 -4.15 5.47 30.64 0.17 -3.98 16 13 C -0.13 -2.71 6.08 30.67 0.19 -2.53 16 14 C 0.11 1.94 6.34 86.36 0.55 2.48 16 15 N -0.60 -16.56 2.97 -818.90 -2.43 -18.99 16 16 C 0.53 15.94 7.48 87.66 0.66 16.60 16 17 O -0.59 -23.57 15.74 -3.02 -0.05 -23.62 16 18 C -0.16 -3.23 4.67 -11.54 -0.05 -3.28 16 19 H 0.15 2.09 6.57 -2.39 -0.02 2.08 16 20 C -0.15 -2.90 6.39 -10.08 -0.06 -2.96 16 21 H 0.09 2.36 7.78 -2.39 -0.02 2.34 16 22 C -0.09 -1.19 6.62 31.67 0.21 -0.98 16 23 C -0.12 -1.08 6.91 31.89 0.22 -0.86 16 24 C -0.09 -0.85 6.63 31.68 0.21 -0.64 16 25 C -0.12 -2.07 6.64 -10.08 -0.07 -2.13 16 26 H 0.10 1.92 8.14 -2.39 -0.02 1.91 16 27 C 0.11 3.89 5.91 86.36 0.51 4.40 16 28 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 29 H 0.37 16.75 5.66 -92.71 -0.53 16.23 16 30 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.12 1.39 5.52 -2.39 -0.01 1.37 16 36 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.07 0.65 8.14 -2.38 -0.02 0.64 16 40 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 43 H 0.06 2.58 7.01 -2.39 -0.02 2.57 16 Total: -1.00 -76.90 336.89 2.54 -74.37 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: 0.41 Total: 24.50 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: 4.00 Total: -3.01 kcal Atomic # 7 Polarization: -116.77 SS G_CDS: -3.72 Total: -120.49 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.05 Total: -23.62 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 1.90 Total: 48.25 kcal Total: -76.90 2.54 -74.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998839994.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.156 kcal (2) G-P(sol) polarization free energy of solvation -76.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds